View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17303_high_13 (Length: 436)
Name: NF17303_high_13
Description: NF17303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17303_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 11 - 421
Target Start/End: Complemental strand, 35110932 - 35110526
Alignment:
| Q |
11 |
ttattctagaaaactgtgatgatcagaattgcccagatattgtttcaagtcagcggaatgatgtctggtcttttcattttccattgagagcaacccatga |
110 |
Q |
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| T |
35110932 |
ttattctacaaaactgtgat---cagaattactcagttattgtttcaagtatgcggaatgatgtctggtcttttcattttccattgagagcaacccatga |
35110836 |
T |
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| Q |
111 |
caatgttcattgttgttattttaatttgtaacaaaaatttgtttgagatnnnnnnnnngtccatcaaaattatttcaaactttctagtttaaataatgaa |
210 |
Q |
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| T |
35110835 |
caatgttcattgttgttattttaatttgtaacaaaaatttgtttgagataaaaaaaa-gtccatcaaaattatttcaaactttctagtttaaataatgaa |
35110737 |
T |
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| Q |
211 |
gcatcaaactaaaaacaacattacgatcaagctgagacttttaatattcaatcattgatgatcattttgcaaaaggccaaagtattaaatttttaaagga |
310 |
Q |
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| T |
35110736 |
gcatcaaactaaacacaacattacgatcaagctgagacttttaatattcaatcattgatgatcattttgcaaaaggccaaagtattaaatttttaaagga |
35110637 |
T |
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| Q |
311 |
taatgaaatacaaaccccgttgaaattgttaaaattttgtgagttttctttgttagtcaacatgatggatgtgatcattgaccgtctatgtgacactgct |
410 |
Q |
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| T |
35110636 |
taatgaaatacaaaccccgttgaaattgttaaaatttcgtgagttttccttgttagtcaacatgatggatgtgatcattgaccgtctatgtgacactgct |
35110537 |
T |
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| Q |
411 |
gtgtggtatgt |
421 |
Q |
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| T |
35110536 |
gtgtggtatgt |
35110526 |
T |
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Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 30 - 77
Target Start/End: Original strand, 14744323 - 14744370
Alignment:
| Q |
30 |
tgatcagaattgcccagatattgtttcaagtcagcggaatgatgtctg |
77 |
Q |
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| T |
14744323 |
tgatcagaattgctcagttattgtttcaagtctgcggaatgatgtctg |
14744370 |
T |
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