View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17303_high_16 (Length: 403)
Name: NF17303_high_16
Description: NF17303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17303_high_16 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 1 - 389
Target Start/End: Original strand, 43408828 - 43409216
Alignment:
| Q |
1 |
atttgaagagctatatgaagcagccgtgaacgagataatggaagtgttggcttcagtgtgcaagacgcacaatttaccattagcactaacatgggctcct |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43408828 |
atttgaagagctatatgaagcagcggtgaacgagataatggaagtgttggcgtcagtgtgcaagacgcacaatttaccattagcactaacatgggctcct |
43408927 |
T |
|
| Q |
101 |
tgcctacaacaacaacaaggaggaggaaagggaagtagtggtgcatcaggttgtggtgtttcaactatgagttgctgcatatcaacggttgattcagctt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43408928 |
tgcctacaacaacaacaaggaggaggaaagggaagtagtggtgcatcaggttgtggtgtttcaactatgagttgctgcatatcaacggttgattcagctt |
43409027 |
T |
|
| Q |
201 |
gttatgttggtgacatggatgtattgggattccaagaagcgtgcagtgagtatcacctttttaatggacaaggaatagtaggaacagccttcacaacaac |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43409028 |
gttatgttggtgacatggatgtattgggattccaagaagcgtgcagtgagtatcacctttttaatggacaaggaatagtaggaacagccttcacaacaac |
43409127 |
T |
|
| Q |
301 |
caaaccttgttttgctattgatattactgccttcagcaaatctgaatatccacttgctcaccatgccaacatgtttggcttacacgctg |
389 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43409128 |
caaaccttgttttgctattgatattactgccttcagcaaatctgaatatccacttgctcaccatgccaacatgtttggcttacacgctg |
43409216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University