View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17303_high_18 (Length: 389)
Name: NF17303_high_18
Description: NF17303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17303_high_18 |
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Alignment Details
Target: chr3 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 16 - 379
Target Start/End: Original strand, 35289659 - 35290027
Alignment:
| Q |
16 |
tcaagttacaggtaaatgcaaagctcatcaatgattttgcaccaaaatttccatgtagtaagtaatattgtaaatttgtaattgttctttctatggctaa |
115 |
Q |
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| T |
35289659 |
tcaagttacaggtaaatgcaaagctcatcaatgattttgcaccaaaatttccatgtagcaagtaatattgtaaatttgtaattgttctttctatggctaa |
35289758 |
T |
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| Q |
116 |
aagtaataccttagatgggttttttcactttagttggacttgggctgatgtggtcatgcttagtagaaatgatatggtcacatcgaaaacctgagaagca |
215 |
Q |
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| T |
35289759 |
aagtaataccttagatgggttttttcactttagttggacttgggctgatgtggtcatgcttagtagaaatgatatggtcacatcgaaaacctgagaagca |
35289858 |
T |
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| Q |
216 |
tagaactattgagataagagtatcatccgattttaaaattgatgacaaatccatcatcaataagatcatcactttagtttcatttcttattgctaagtat |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35289859 |
tagaactattgagataagagtatcatccgattttaaaattgatgacaaatccatcatcaataagatcatcactttagtttcatttcttattgctaagtat |
35289958 |
T |
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| Q |
316 |
aattaattattgacgtggcagtaattttactac-----ttgtgacttgtgagcaagacttgcccctatg |
379 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
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| T |
35289959 |
aattaattattgacgtggcagtaattttactacttgcattgtgacttgtgagcaagacttgcctctatg |
35290027 |
T |
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