View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17303_high_22 (Length: 383)
Name: NF17303_high_22
Description: NF17303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17303_high_22 |
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Alignment Details
Target: chr4 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 365
Target Start/End: Original strand, 51350170 - 51350532
Alignment:
| Q |
1 |
gacattgattttattagagctgcaaagtatagtttctgtcaaattcacagaagcacaccgcgattctatcaaactcacc-taaatgcgaatgtgcactca |
99 |
Q |
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| T |
51350170 |
gacattgattttattagagctgcaaagtatagtttctgtcaaattcacagaagcacaccgcgattctatcaaattcaccataaatgcgaatgtgcactca |
51350269 |
T |
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| Q |
100 |
tgatgatgatggtgaatatattactgcaattgtcaatttagcacagtagaatcttgatgcttgtagtaaaaacaaaattaataagatatctctgcattaa |
199 |
Q |
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| T |
51350270 |
tagtgat---ggtgaatatattactgcaattgtcaatttagcacagtagaatcttgatgcttgtagtaaaaacaaaattaataagatatctctgcattaa |
51350366 |
T |
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| Q |
200 |
ttgatatctaccacttgtgataatctatactggtatgctaataatgtagtactggtattattgaatataaaatagaaataactacatttactccaacctg |
299 |
Q |
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| T |
51350367 |
ttgatatctaccacttgtgataatctatactggtatgctaataatgtagtactggtattattgaatataaaatagaaataactacatttactccaacctg |
51350466 |
T |
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| Q |
300 |
aatttaaaattgaaattggagagacttatgactctatttcaccctccaattcttgaccgtgacaac |
365 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
51350467 |
aatttaaaattgaaattgaagagacttatgactctatttcaccctccaattcttgactgtgacaac |
51350532 |
T |
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