View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17303_high_51 (Length: 249)
Name: NF17303_high_51
Description: NF17303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17303_high_51 |
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Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 9 - 234
Target Start/End: Original strand, 5601591 - 5601815
Alignment:
| Q |
9 |
ctcaataatgtgatactgataatat-attgttatatgctcaacaaacatataaaggctttgtcaaaatacaaacatatatataaaggctaaagttgaaat |
107 |
Q |
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| T |
5601591 |
ctcaataatgtgatactgataatatgattgttatatgctcaacaaacatataaaggctttgtcaaaatacaaacatat--ataaaggctaaagttgaaat |
5601688 |
T |
|
| Q |
108 |
tagcctattataagtttatattgagtttaatttatctttacaaaacggacttataaagtgaagaatatcactccttatatacttctacgagatcttattt |
207 |
Q |
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| T |
5601689 |
tagcctattataagtttatattgagtttaatttatctttacaaaacgaacttataaagtgaagaatatcactccttatatacttctacgagatcttattt |
5601788 |
T |
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| Q |
208 |
ctttcttgaaggaccatctttatcact |
234 |
Q |
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||||||||||||||||||||||||||| |
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| T |
5601789 |
ctttcttgaaggaccatctttatcact |
5601815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 9 - 234
Target Start/End: Complemental strand, 5639029 - 5638805
Alignment:
| Q |
9 |
ctcaataatgtgatactgataatat-attgttatatgctcaacaaacatataaaggctttgtcaaaatacaaacatatatataaaggctaaagttgaaat |
107 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
5639029 |
ctcaataatgtgatactgataatatgattgttatatgctcaacaaacatataaaggctttgtcaaaatacaaacatatata--aaggctaaagttgaaat |
5638932 |
T |
|
| Q |
108 |
tagcctattataagtttatattgagtttaatttatctttacaaaacggacttataaagtgaagaatatcactccttatatacttctacgagatcttattt |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5638931 |
tagcctattataagtttatattgagtttaatttatctttacaaaacgaacttataaagtgaagaatatcactccttatatacttctacgagatcttattt |
5638832 |
T |
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| Q |
208 |
ctttcttgaaggaccatctttatcact |
234 |
Q |
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||||||||||||||||||||||||||| |
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| T |
5638831 |
ctttcttgaaggaccatctttatcact |
5638805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 140 - 190
Target Start/End: Complemental strand, 5652079 - 5652030
Alignment:
| Q |
140 |
tatctttacaaaacggacttataaagtgaagaatatcactccttatatact |
190 |
Q |
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| T |
5652079 |
tatctttacaaaatggacttgtaaagtgaa-aatatcactccttatatact |
5652030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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