View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17303_high_54 (Length: 240)
Name: NF17303_high_54
Description: NF17303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17303_high_54 |
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Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 48085044 - 48084822
Alignment:
| Q |
1 |
accataagcttgagggttggtaatgtaatccatgtgcattctataagcatcagcagcaacgaagatgtcagagccaatctcttggtttagtgatctgatc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
48085044 |
accataagcttgagggttggtaatgtaatccatgtgcattctatatgcatcagcagcaacaaagatgtcagagccaatctcttggtttagtgatctgatc |
48084945 |
T |
|
| Q |
101 |
atgtcaacaagttgaggattgtataaagatgcagctctctcaagttccacactacactgaccatttggacctcctctcatagctaattctgctggtgcac |
200 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48084944 |
atgtcaacaagttgaggattgtataaggatgcagctctctcaagttccacactacactgaccatttggacctcctctcatagctaattctgctggtgcac |
48084845 |
T |
|
| Q |
201 |
accccattggtcctgttcccgtt |
223 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
48084844 |
accccattggtcctgttcccgtt |
48084822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 35376528 - 35376747
Alignment:
| Q |
1 |
accataagcttgagggttggtaatgtaatccatgtgcattctataagcatcagcagcaacgaagatgtcagagccaatctcttggtttagtgatctgatc |
100 |
Q |
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|||| ||||||||||||||||||| |||||||||||||| | |||| |||||||| ||||| ||||| ||||||||| ||| ||| | ||||| |
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| T |
35376528 |
accaaaagcttgagggttggtaataaaatccatgtgcatttgacgtgcattagcagcaatgaagacatcagaaccaatctctgtgttgagttctttgatc |
35376627 |
T |
|
| Q |
101 |
atgtcaacaagttgaggattgtataaagatgcagctctctcaagttccacactacactgaccatttggacctcctctcatagctaattctgctggtgcac |
200 |
Q |
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| T |
35376628 |
atttcgacaagttgtggattatataaggaggcagctctcacgagttccacatcacaatcaccattt---ctacttctcaaagctaactctgcaggtacac |
35376724 |
T |
|
| Q |
201 |
accccattggtcctgttcccgtt |
223 |
Q |
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||||||||||||| || |||||| |
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| T |
35376725 |
accccattggtcccgtgcccgtt |
35376747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 35357950 - 35358088
Alignment:
| Q |
1 |
accataagcttgagggttggtaatgtaatccatgtgcattctataagcatcagcagcaacgaagatgtcagagccaatctcttggtttagtgatctgatc |
100 |
Q |
| |
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|||| |||||| |||||||||||| |||||||||||||| ||| |||| | |||||| ||||| ||| ||||||||| ||| ||| | ||||| |
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| T |
35357950 |
accaaaagctttagggttggtaataaaatccatgtgcattttatgtgcattaacagcaatgaagacatcatcaccaatctctctgttgagttgtgtgatc |
35358049 |
T |
|
| Q |
101 |
atgtcaacaagttgaggattgtataaagatgcagctctc |
139 |
Q |
| |
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|| | ||||||||| ||||| ||||| || ||||||||| |
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| T |
35358050 |
atttgaacaagttgtggattatataaggacgcagctctc |
35358088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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