View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17303_high_58 (Length: 227)

Name: NF17303_high_58
Description: NF17303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17303_high_58
NF17303_high_58
[»] chr5 (1 HSPs)
chr5 (65-221)||(19851148-19851304)
[»] chr2 (1 HSPs)
chr2 (116-186)||(16605811-16605881)
[»] chr4 (1 HSPs)
chr4 (126-169)||(24911946-24911989)
[»] chr3 (1 HSPs)
chr3 (126-174)||(3904389-3904437)


Alignment Details
Target: chr5 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 65 - 221
Target Start/End: Original strand, 19851148 - 19851304
Alignment:
Q  65 gctcatttaaggttttggtttgatttgcccacaataggtgttaannnnnnngaatttgattaaactcacaccaatactatgatgtgaggagcaaaattag 164  Q
    ||||||||||||||||| |||||||| |||||||||||||||||       ||||| ||||||||| |||||||||||||||||||||||||||||||||    
T  19851148 gctcatttaaggttttgttttgatttccccacaataggtgttaatttttttgaattcgattaaactaacaccaatactatgatgtgaggagcaaaattag 19851247  T
Q  165 tagcattcaataagtaaagtgaactaactgcctcgttcgcactgtgcttcaaaaaac 221  Q
    |||||||||||||  |||||||| ||||| ||||||||||  |||||||||||||||    
T  19851248 tagcattcaataatcaaagtgaagtaactacctcgttcgcgttgtgcttcaaaaaac 19851304  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 116 - 186
Target Start/End: Complemental strand, 16605881 - 16605811
Alignment:
Q  116 gaatttgattaaactcacaccaatactatgatgtgaggagcaaaattagtagcattcaataagtaaagtga 186  Q
    |||||| || ||||||||||||||||||||||| | |||||||||||| ||||| |||||||  |||||||    
T  16605881 gaattttataaaactcacaccaatactatgatgagtggagcaaaattattagcaatcaataaccaaagtga 16605811  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 169
Target Start/End: Complemental strand, 24911989 - 24911946
Alignment:
Q  126 aaactcacaccaatactatgatgtgaggagcaaaattagtagca 169  Q
    ||||| ||||||||||| ||||||| ||||||||||||||||||    
T  24911989 aaacttacaccaatactttgatgtgtggagcaaaattagtagca 24911946  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 174
Target Start/End: Complemental strand, 3904437 - 3904389
Alignment:
Q  126 aaactcacaccaatactatgatgtgaggagcaaaattagtagcattcaa 174  Q
    ||||||||||||||||| |||||||  |||||||||||| |||| ||||    
T  3904437 aaactcacaccaatactttgatgtgtagagcaaaattagcagcaatcaa 3904389  T

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