View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17303_high_6 (Length: 575)
Name: NF17303_high_6
Description: NF17303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17303_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 44650445 - 44650167
Alignment:
| Q |
1 |
tactccataattcaatgtttgattaatttgctctttctctgccttccatattgtataatttataggtgaattgttgttatggtaattcacgtccttaatt |
100 |
Q |
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| T |
44650445 |
tactccataattcaatgtttgattaatttgctctttctctgccttccatat-gtataatttataggtaaattattgttatggtagttcacgtccttaatt |
44650347 |
T |
|
| Q |
101 |
tgtgcttccatattgtatacttttaagttaactttggtaattcattcatggtccttagtttgtgctttcgagaccgagtagctctatactagaagactc- |
199 |
Q |
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| T |
44650346 |
tgtgcttccatattgtatacttttaagttaactttggtaattcattcatggtccttagtttgtgctttcgagaccgagtagctctatactagaagactca |
44650247 |
T |
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| Q |
200 |
-atatatattcgcatgacaaatgatagaaatcaaacatctttgtaaagtttgagagttcccacctttaatcaaacaatcg |
278 |
Q |
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| T |
44650246 |
gatatatattcgcatgacaaatgatagaaatcaaacatctttgtaaagtttgagagttcccacctttaatcaaacaatcg |
44650167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 291 - 564
Target Start/End: Complemental strand, 44650141 - 44649868
Alignment:
| Q |
291 |
acaataatcaatcgctannnnnnnaaaggatcaaacaatcacctggtctttgttaattgttagatttcttattatttttccgttaaatggaaattgtcat |
390 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44650141 |
acaataatcaatcgctatttttttaaaggatcaaacaatcacctggtctttgttaattgttagatttcttattatttttccgttaaatggaaattgtcat |
44650042 |
T |
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| Q |
391 |
attcaaatcgtgtgtatcctctnnnnnnnntcatgtgaatatgtagcaaactttttgataaagaaatccttaatttacaaaccccatgtagcttatgcaa |
490 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44650041 |
attcaaatcgtgtgtatcctctaaaaaaaatcatgtgaatatgtagcaaactttttgataaagaaatccttaatttacaaaccccatgtagcttatgcaa |
44649942 |
T |
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| Q |
491 |
gaggatagtcaatagaacctaactccaaaccaaaacaagcaaattaataagacaaaaacttgtttacggttcat |
564 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44649941 |
gaggatagtcaatagaacctaacaccaaaccaaaacaagcaaattaataagacaaaaacttgtttacggttcat |
44649868 |
T |
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