View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17303_high_63 (Length: 204)

Name: NF17303_high_63
Description: NF17303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17303_high_63
NF17303_high_63
[»] chr7 (3 HSPs)
chr7 (1-183)||(24532637-24532822)
chr7 (127-175)||(25099321-25099369)
chr7 (125-175)||(29407563-29407613)
[»] chr5 (2 HSPs)
chr5 (121-183)||(42772031-42772093)
chr5 (136-183)||(7137671-7137718)
[»] scaffold0343 (1 HSPs)
scaffold0343 (136-183)||(12288-12335)
[»] chr8 (3 HSPs)
chr8 (85-183)||(31470774-31470873)
chr8 (85-183)||(7931553-7931652)
chr8 (155-183)||(7931554-7931582)
[»] chr6 (4 HSPs)
chr6 (136-183)||(369500-369547)
chr6 (85-181)||(28581761-28581858)
chr6 (136-182)||(5150713-5150759)
chr6 (125-181)||(16193762-16193818)
[»] chr4 (6 HSPs)
chr4 (137-183)||(54223583-54223629)
chr4 (135-181)||(32008316-32008362)
chr4 (146-183)||(9712943-9712980)
chr4 (99-182)||(54613064-54613145)
chr4 (155-183)||(22435451-22435479)
chr4 (155-183)||(30023645-30023673)
[»] chr1 (4 HSPs)
chr1 (85-175)||(10449477-10449568)
chr1 (85-180)||(44801781-44801879)
chr1 (155-183)||(10449478-10449506)
chr1 (155-183)||(49200058-49200086)
[»] chr3 (5 HSPs)
chr3 (114-175)||(36738299-36738361)
chr3 (138-183)||(22893982-22894027)
chr3 (85-181)||(32385387-32385484)
chr3 (135-183)||(29081629-29081677)
chr3 (125-183)||(25786952-25787010)


Alignment Details
Target: chr7 (Bit Score: 111; Significance: 3e-56; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 24532637 - 24532822
Alignment:
Q  1 tgttggagcgaggtgcattatcnnnnnnnagaataagagtgttacttgaacaattgttgatgatttatgggatgatacttggacgacattggccgatcac 100  Q
    ||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||  || |||    
T  24532637 tgttggagcgaggtgcattatctttttttagaataagagtgttacttgaacaattgttgatgatttgtgggataatacttggacgacattggtggaccac 24532736  T
Q  101 aatgtca---catgtatataaataaacaaaaaatatcatgaaagagaaagaagaaggacacttgtgacattgtggttggtcaatgt 183  Q
    |||||||   ||||| |||||| ||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||    
T  24532737 aatgtcatcacatgtgtataaaaaaataaaaaatatcataaaagagaaagaagaaggacacttgtgacattgtggttgatcaatgt 24532822  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 175
Target Start/End: Original strand, 25099321 - 25099369
Alignment:
Q  127 aaaatatcatgaaagagaaagaagaaggacacttgtgacattgtggttg 175  Q
    |||||||  ||||||| ||||||||| ||||||||||||||||||||||    
T  25099321 aaaatattgtgaaagaaaaagaagaaagacacttgtgacattgtggttg 25099369  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 175
Target Start/End: Original strand, 29407563 - 29407613
Alignment:
Q  125 aaaaaatatcatgaaagagaaagaagaaggacacttgtgacattgtggttg 175  Q
    |||||||||  ||||||||||||||||| |||| |||||||||||| ||||    
T  29407563 aaaaaatattgtgaaagagaaagaagaaagacagttgtgacattgtagttg 29407613  T

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Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 121 - 183
Target Start/End: Original strand, 42772031 - 42772093
Alignment:
Q  121 aaacaaaaaatatcatgaaagagaaagaagaaggacacttgtgacattgtggttggtcaatgt 183  Q
    ||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||    
T  42772031 aaacaaaaaatattatgaaaaagaaagaagaaagacacttgtgacattgtggttggtcaatgt 42772093  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 183
Target Start/End: Complemental strand, 7137718 - 7137671
Alignment:
Q  136 tgaaagagaaagaagaaggacacttgtgacattgtggttggtcaatgt 183  Q
    |||||||||| |||||| | ||||||||||||||||||||||||||||    
T  7137718 tgaaagagaatgaagaaagtcacttgtgacattgtggttggtcaatgt 7137671  T

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Target: scaffold0343 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 136 - 183
Target Start/End: Original strand, 12288 - 12335
Alignment:
Q  136 tgaaagagaaagaagaaggacacttgtgacattgtggttggtcaatgt 183  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  12288 tgaaagagaaagaagaaggacacttgtgacattgtggttggtcaatgt 12335  T

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Target: chr8 (Bit Score: 48; Significance: 1e-18; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 85 - 183
Target Start/End: Complemental strand, 31470873 - 31470774
Alignment:
Q  85 gacattggccgatcacaatgtcacatgtatataaataaacaaaaaa-tatcatgaaagagaaagaagaaggacacttgtgacattgtggttggtcaatgt 183  Q
    |||||||||| | |||||||||||| || || ||| |||||||||| |||  ||||||| ||||||||| || |||||||||||||||||||||||||||    
T  31470873 gacattggccaaccacaatgtcacaagtgtacaaagaaacaaaaaaatattgtgaaagaaaaagaagaatgatacttgtgacattgtggttggtcaatgt 31470774  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 85 - 183
Target Start/End: Original strand, 7931553 - 7931652
Alignment:
Q  85 gacattggccgatcacaatgtcacatgtatataaataaacaaaaaa-tatcatgaaagagaaagaagaaggacacttgtgacattgtggttggtcaatgt 183  Q
    ||||||| || | |||||||||||| || || ||| |||||||||| ||| |||||||||||||||||| |||| |||||||||||||||| | ||||||    
T  7931553 gacattgaccaaccacaatgtcacaagtgtacaaagaaacaaaaaaatattatgaaagagaaagaagaaagacatttgtgacattgtggtttgccaatgt 7931652  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 183
Target Start/End: Complemental strand, 7931582 - 7931554
Alignment:
Q  155 acacttgtgacattgtggttggtcaatgt 183  Q
    |||||||||||||||||||||||||||||    
T  7931582 acacttgtgacattgtggttggtcaatgt 7931554  T

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Target: chr6 (Bit Score: 44; Significance: 3e-16; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 136 - 183
Target Start/End: Original strand, 369500 - 369547
Alignment:
Q  136 tgaaagagaaagaagaaggacacttgtgacattgtggttggtcaatgt 183  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  369500 tgaaagagaaagaagaaagacacttgtgacattgtggttggtcaatgt 369547  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 85 - 181
Target Start/End: Original strand, 28581761 - 28581858
Alignment:
Q  85 gacattggccgatcacaatgtcacatgtatataaataaacaaaaaa-tatcatgaaagagaaagaagaaggacacttgtgacattgtggttggtcaat 181  Q
    |||||||||| | |||||||||| | |||||| || |||||||||| |||  ||||||||||||||||| ||||||||||| ||||  ||||||||||    
T  28581761 gacattggccaaccacaatgtcataagtatatgaaaaaacaaaaaaatattgtgaaagagaaagaagaaagacacttgtgatattgatgttggtcaat 28581858  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 136 - 182
Target Start/End: Original strand, 5150713 - 5150759
Alignment:
Q  136 tgaaagagaaagaagaaggacacttgtgacattgtggttggtcaatg 182  Q
    ||||| ||||||||||| ||||||||| |||||||||||||||||||    
T  5150713 tgaaaaagaaagaagaatgacacttgtaacattgtggttggtcaatg 5150759  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 181
Target Start/End: Complemental strand, 16193818 - 16193762
Alignment:
Q  125 aaaaaatatcatgaaagagaaagaagaaggacacttgtgacattgtggttggtcaat 181  Q
    |||||||||  |||| |||||||||||| |||||||||||||||||| |||| ||||    
T  16193818 aaaaaatattgtgaaggagaaagaagaaagacacttgtgacattgtgattggccaat 16193762  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 137 - 183
Target Start/End: Complemental strand, 54223629 - 54223583
Alignment:
Q  137 gaaagagaaagaagaaggacacttgtgacattgtggttggtcaatgt 183  Q
    |||||||||||||||| |||| |||||||||||||||||||||||||    
T  54223629 gaaagagaaagaagaaagacatttgtgacattgtggttggtcaatgt 54223583  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 181
Target Start/End: Original strand, 32008316 - 32008362
Alignment:
Q  135 atgaaagagaaagaagaaggacacttgtgacattgtggttggtcaat 181  Q
    |||| ||||||||||||| ||||||||| ||||| ||||||||||||    
T  32008316 atgagagagaaagaagaaagacacttgtaacattttggttggtcaat 32008362  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 146 - 183
Target Start/End: Original strand, 9712943 - 9712980
Alignment:
Q  146 agaagaaggacacttgtgacattgtggttggtcaatgt 183  Q
    ||||||| | ||||||||||||||||||||||||||||    
T  9712943 agaagaaagccacttgtgacattgtggttggtcaatgt 9712980  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 99 - 182
Target Start/End: Complemental strand, 54613145 - 54613064
Alignment:
Q  99 acaatgtcacatgtatataaataaacaaaaaatatcatgaaagagaaagaagaag-gacacttgtgacattgtggttggtcaatg 182  Q
    ||||||||||| || |||||| ||||||||||| | || |||||||||||||||  | ||||||  |||||||||||||||||||    
T  54613145 acaatgtcacaagtgtataaa-aaacaaaaaatcttattaaagagaaagaagaaaagtcacttg--acattgtggttggtcaatg 54613064  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 183
Target Start/End: Original strand, 22435451 - 22435479
Alignment:
Q  155 acacttgtgacattgtggttggtcaatgt 183  Q
    |||||||||||||||||||||||||||||    
T  22435451 acacttgtgacattgtggttggtcaatgt 22435479  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 183
Target Start/End: Original strand, 30023645 - 30023673
Alignment:
Q  155 acacttgtgacattgtggttggtcaatgt 183  Q
    |||||||||||||||||||||||||||||    
T  30023645 acacttgtgacattgtggttggtcaatgt 30023673  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 85 - 175
Target Start/End: Original strand, 10449477 - 10449568
Alignment:
Q  85 gacattggccgatcacaatgtcacatgtatataaataaacaaaaaa-tatcatgaaagagaaagaagaaggacacttgtgacattgtggttg 175  Q
    ||||||| || | |||||||||||| || || ||| |||||||||| |||  ||||||||||||||||| || | |||||||||||||||||    
T  10449477 gacattgaccaaccacaatgtcacaagtgtacaaagaaacaaaaaaatattgtgaaagagaaagaagaaagatatttgtgacattgtggttg 10449568  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 180
Target Start/End: Original strand, 44801781 - 44801879
Alignment:
Q  85 gacattggccgatcacaatgtcaca---tgtatataaataaacaaaaaatatcatgaaagagaaagaagaaggacacttgtgacattgtggttggtcaa 180  Q
    |||||||||| | ||||||||||||   |||| | ||| | | |||||||||  ||||||||||||||||| |||| |||||| ||| |||||||||||    
T  44801781 gacattggccaaccacaatgtcacaaagtgtacaaaaaaacaaaaaaaatattgtgaaagagaaagaagaaagacatttgtgatattatggttggtcaa 44801879  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 183
Target Start/End: Complemental strand, 10449506 - 10449478
Alignment:
Q  155 acacttgtgacattgtggttggtcaatgt 183  Q
    |||||||||||||||||||||||||||||    
T  10449506 acacttgtgacattgtggttggtcaatgt 10449478  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 183
Target Start/End: Original strand, 49200058 - 49200086
Alignment:
Q  155 acacttgtgacattgtggttggtcaatgt 183  Q
    |||||||||||||||||||||||||||||    
T  49200058 acacttgtgacattgtggttggtcaatgt 49200086  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000007; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 114 - 175
Target Start/End: Complemental strand, 36738361 - 36738299
Alignment:
Q  114 tataaataaacaaaaaa-tatcatgaaagagaaagaagaaggacacttgtgacattgtggttg 175  Q
    ||||||||||||||||| |||  ||||| ||||||||||| ||||||||||| ||||||||||    
T  36738361 tataaataaacaaaaaaatattgtgaaaaagaaagaagaaagacacttgtgatattgtggttg 36738299  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 183
Target Start/End: Original strand, 22893982 - 22894027
Alignment:
Q  138 aaagagaaagaagaaggacacttgtgacattgtggttggtcaatgt 183  Q
    ||||| ||||||||| | ||||||||||||||||||||||||||||    
T  22893982 aaagaaaaagaagaaagtcacttgtgacattgtggttggtcaatgt 22894027  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 85 - 181
Target Start/End: Original strand, 32385387 - 32385484
Alignment:
Q  85 gacattggccgatcacaatgtcacatgtatataaataaacaaa-aaatatcatgaaagagaaagaagaaggacacttgtgacattgtggttggtcaat 181  Q
    |||||||| | | |||||||| ||| || || ||||||||||| ||||||  |||||||||||||||||  |||||| | ||||||||||||| ||||    
T  32385387 gacattggtcaaccacaatgtgacaagtgtacaaataaacaaataaatattgtgaaagagaaagaagaaaaacacttttaacattgtggttggccaat 32385484  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 183
Target Start/End: Complemental strand, 29081677 - 29081629
Alignment:
Q  135 atgaaagagaaagaagaaggacacttgtgacattgtggttggtcaatgt 183  Q
    |||||| ||||||||||| |  |||||||||||||||||||||||||||    
T  29081677 atgaaaaagaaagaagaaagctacttgtgacattgtggttggtcaatgt 29081629  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 183
Target Start/End: Complemental strand, 25787010 - 25786952
Alignment:
Q  125 aaaaaatatcatgaaagagaaagaagaaggacacttgtgacattgtggttggtcaatgt 183  Q
    |||||||||  ||||||||||||| ||| ||||||||||||||| || ||| |||||||    
T  25787010 aaaaaatattgtgaaagagaaagatgaaagacacttgtgacattatgattgatcaatgt 25786952  T

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