View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17303_high_67 (Length: 202)

Name: NF17303_high_67
Description: NF17303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17303_high_67
NF17303_high_67
[»] chr2 (1 HSPs)
chr2 (1-202)||(34563174-34563373)
[»] chr8 (1 HSPs)
chr8 (1-56)||(31470777-31470832)
[»] chr7 (2 HSPs)
chr7 (6-54)||(25099321-25099369)
chr7 (12-56)||(29407563-29407607)
[»] chr6 (3 HSPs)
chr6 (1-56)||(28581802-28581857)
chr6 (1-56)||(369489-369544)
chr6 (12-56)||(16193774-16193818)
[»] chr1 (1 HSPs)
chr1 (6-56)||(10449518-10449568)
[»] scaffold0343 (1 HSPs)
scaffold0343 (1-52)||(12281-12332)
[»] chr5 (1 HSPs)
chr5 (1-56)||(42772035-42772090)
[»] chr3 (3 HSPs)
chr3 (1-56)||(22893969-22894024)
chr3 (5-56)||(31342044-31342095)
chr3 (1-37)||(29081632-29081668)
[»] chr4 (1 HSPs)
chr4 (12-56)||(32224328-32224372)


Alignment Details
Target: chr2 (Bit Score: 171; Significance: 5e-92; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 34563373 - 34563174
Alignment:
Q  1 ttgaccaacctcaatgtcacaagtatctttcttctttttctctcacaatattttttatactcattttcaaattgcaccggtcatgctacaaaatggtaga 100  Q
    ||||||||| |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34563373 ttgaccaacttcaatgtcacaagtatctttcttcattttctttcacaatattttttatactcattttcaaattgcaccggtcatgctacaaaatggtaga 34563274  T
Q  101 ttcaatttaaatatctaaaagaaacatatcagccaccttccttggcaatccacgctgaagcacaaaaccgttgaaacatgcaacctccacgtacactgtc 200  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||    
T  34563273 ttcaatttaaatatctaaaag--acatatcagccaccttccttggcaatccacgttgaagcacaaaaccgttgaaacatgcaacttccacgtacactgtc 34563176  T

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Target: chr8 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 31470777 - 31470832
Alignment:
Q  1 ttgaccaacctcaatgtcacaagtatctttcttctttttctctcacaatatttttt 56  Q
    |||||||||| |||||||||||||||| ||||||||||||| ||||||||||||||    
T  31470777 ttgaccaaccacaatgtcacaagtatcattcttctttttctttcacaatatttttt 31470832  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 6 - 54
Target Start/End: Complemental strand, 25099369 - 25099321
Alignment:
Q  6 caacctcaatgtcacaagtatctttcttctttttctctcacaatatttt 54  Q
    ||||| ||||||||||||| |||||||||||||||| ||||||||||||    
T  25099369 caaccacaatgtcacaagtgtctttcttctttttctttcacaatatttt 25099321  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 29407607 - 29407563
Alignment:
Q  12 caatgtcacaagtatctttcttctttttctctcacaatatttttt 56  Q
    ||||||||||| | |||||||||||| ||| ||||||||||||||    
T  29407607 caatgtcacaactgtctttcttctttctctttcacaatatttttt 29407563  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 28581857 - 28581802
Alignment:
Q  1 ttgaccaacctcaatgtcacaagtatctttcttctttttctctcacaatatttttt 56  Q
    ||||||||| ||||| |||||||| |||||||||||| ||| ||||||||||||||    
T  28581857 ttgaccaacatcaatatcacaagtgtctttcttctttctctttcacaatatttttt 28581802  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 369544 - 369489
Alignment:
Q  1 ttgaccaacctcaatgtcacaagtatctttcttctttttctctcacaatatttttt 56  Q
    |||||||||| ||||||||||||| |||||||||||| ||| ||||| | ||||||    
T  369544 ttgaccaaccacaatgtcacaagtgtctttcttctttctctttcacagtttttttt 369489  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 16193774 - 16193818
Alignment:
Q  12 caatgtcacaagtatctttcttctttttctctcacaatatttttt 56  Q
    ||||||||||||| |||||||||||| ||  ||||||||||||||    
T  16193774 caatgtcacaagtgtctttcttctttctccttcacaatatttttt 16193818  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 6 - 56
Target Start/End: Complemental strand, 10449568 - 10449518
Alignment:
Q  6 caacctcaatgtcacaagtatctttcttctttttctctcacaatatttttt 56  Q
    ||||| ||||||||||| |||||||||||||| ||| ||||||||||||||    
T  10449568 caaccacaatgtcacaaatatctttcttctttctctttcacaatatttttt 10449518  T

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Target: scaffold0343 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 12332 - 12281
Alignment:
Q  1 ttgaccaacctcaatgtcacaagtatctttcttctttttctctcacaatatt 52  Q
    |||||||||| ||||||||||||| || ||||||||| ||| ||||||||||    
T  12332 ttgaccaaccacaatgtcacaagtgtccttcttctttctctttcacaatatt 12281  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 42772090 - 42772035
Alignment:
Q  1 ttgaccaacctcaatgtcacaagtatctttcttctttttctctcacaatatttttt 56  Q
    |||||||||| ||||||||||||| |||||||||||| | | ||| ||||||||||    
T  42772090 ttgaccaaccacaatgtcacaagtgtctttcttctttctttttcataatatttttt 42772035  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 22894024 - 22893969
Alignment:
Q  1 ttgaccaacctcaatgtcacaagtatctttcttctttttctctcacaatatttttt 56  Q
    |||||||||| |||||||||||||  ||||||||||||||| | |||| |||||||    
T  22894024 ttgaccaaccacaatgtcacaagtgactttcttctttttctttaacaagatttttt 22893969  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 5 - 56
Target Start/End: Original strand, 31342044 - 31342095
Alignment:
Q  5 ccaacctcaatgtcacaagtatctttcttctttttctctcacaatatttttt 56  Q
    |||||| |||||||||| ||| ||||||||||||||| |||||| |||||||    
T  31342044 ccaaccacaatgtcacatgtagctttcttctttttctttcacaagatttttt 31342095  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 29081632 - 29081668
Alignment:
Q  1 ttgaccaacctcaatgtcacaagtatctttcttcttt 37  Q
    |||||||||| |||||||||||||| |||||||||||    
T  29081632 ttgaccaaccacaatgtcacaagtagctttcttcttt 29081668  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 32224328 - 32224372
Alignment:
Q  12 caatgtcacaagtatctttcttctttttctctcacaatatttttt 56  Q
    |||||||||||||||||||||||||| | | | ||||||||||||    
T  32224328 caatgtcacaagtatctttcttctttctttttgacaatatttttt 32224372  T

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