View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17303_high_8 (Length: 520)
Name: NF17303_high_8
Description: NF17303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17303_high_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 11 - 308
Target Start/End: Complemental strand, 46045075 - 46044778
Alignment:
| Q |
11 |
cataggataaaaatatgttgcgaagagcagcaaccaatgcatattcatggtggtgggttagccacatcaggacaaaacaatcaaaatggctggaacaaag |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46045075 |
cataggataaaaatatgttgcgaagagcagcaaccaatgcatattcatggtggtgggttagccacatcaggacaaaacaatcaaaatggctggaacaaag |
46044976 |
T |
|
| Q |
111 |
tctccaaggtatgttttttgctacgtaaaatttcatcatatatggtttgaatatcatttttatgtctgctaacgttgtaatccattgtcaatggttttat |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46044975 |
tctccaaggtatgttttttgctacgtaaaatttcatcatatatggtttgaatatcatttttatgtctgctaacgttgtaatccattgtcaatggttttat |
46044876 |
T |
|
| Q |
211 |
ttttattgcgggtttgaacctgcgtctctcatcatatcaaatgttccggctattaccatttgagttgtatttacgggacaatattttcattcttttat |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |
|
|
| T |
46044875 |
ttttattgcgggtttgaacctgcgtctctcatcatatcaaatgttccggctattaccatttaagttgtatttacttgacaatattttcattcttttat |
46044778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 300 - 506
Target Start/End: Complemental strand, 46042529 - 46042323
Alignment:
| Q |
300 |
ttcttttattagttgtttaccattttcttagtagtacatgatatacatctatataacagaatacattgtatagatatataattggattctaaagaaataa |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |
|
|
| T |
46042529 |
ttcttttattagttgtttaccattttcttagtagaacatgatatacatctatataacagaatacattgtttaaatatataattggattctaaagaaataa |
46042430 |
T |
|
| Q |
400 |
aacaaaatgattcataatgtatggaaacagataaatgtgtcaaaataatctgaaaatcatgttatttagtaatagcatgaagaataacaaatatttaatg |
499 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46042429 |
aacaaaatgattcataatgtatggaaacagataaatgggtcaaaataatctgaaaatcatgttatttagtaatagcatgaagaataacaaatatttaatg |
46042330 |
T |
|
| Q |
500 |
tcaaaca |
506 |
Q |
| |
|
||||||| |
|
|
| T |
46042329 |
tcaaaca |
46042323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 9e-22; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 37 - 126
Target Start/End: Original strand, 27973511 - 27973600
Alignment:
| Q |
37 |
gcagcaaccaatgcatattcatggtggtgggttagccacatcaggacaaaacaatcaaaatggctggaacaaagtctccaaggtatgttt |
126 |
Q |
| |
|
||||||| |||||||||||||||||||||| |||||||| |||||||| |||||||||||| |||| ||| ||||||||||||||||| |
|
|
| T |
27973511 |
gcagcaagtaatgcatattcatggtggtgggccagccacattaggacaaagcaatcaaaatggttggatcaatgtctccaaggtatgttt |
27973600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 19 - 109
Target Start/End: Complemental strand, 13751253 - 13751163
Alignment:
| Q |
19 |
aaaaatatgttgcgaagagcagcaaccaatgcatattcatggtggtgggttagccacatcaggacaaaacaatcaaaatggctggaacaaa |
109 |
Q |
| |
|
||||| ||||||| |||||||| | ||||||||||||||||||||||| ||| ||| |||| ||||| |||||||||||| |||| |||| |
|
|
| T |
13751253 |
aaaaaaatgttgcagagagcagctagcaatgcatattcatggtggtgggctagtcacgtcagaacaaagcaatcaaaatggatggagcaaa |
13751163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 25 - 120
Target Start/End: Complemental strand, 28754667 - 28754572
Alignment:
| Q |
25 |
atgttgcgaagagcagcaaccaatgcatattcatggtggtgggttagccacatcaggacaaaacaatcaaaatggctggaacaaagtctccaaggt |
120 |
Q |
| |
|
||||||| |||||| |||| |||||| |||||||||||||||| |||||||| || ||||| |||||||||||| ||||||||| ||||||||| |
|
|
| T |
28754667 |
atgttgcaaagagctgcaagcaatgcttattcatggtggtgggccagccacattagaacaaagcaatcaaaatggatggaacaaaacctccaaggt |
28754572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University