View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17303_low_12 (Length: 460)
Name: NF17303_low_12
Description: NF17303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17303_low_12 |
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| [»] scaffold0627 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 1 - 444
Target Start/End: Complemental strand, 31807691 - 31807230
Alignment:
| Q |
1 |
aggatccaatgaagtgcttcattgacaaaagaaataccatgaagtagtaggatcaactctcctcaatgttgttcctaccacatgaatttcaacagtagta |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
31807691 |
aggatccaatgaagtgcttcattgacaaaagaaataccatgaagtagtaggatcaactctcctcaatgttgttcctaccacatgaatttcaacagtaata |
31807592 |
T |
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| Q |
101 |
tgaagaagttgatagactgttagtaggattcaatttacataatgatcttaatgtaattaacttatataacaaacttctaactaatcacaattaacttcta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
31807591 |
tgaagaagttgatagactgttagtaggattcaatttacataatgatcttaatgtaattaacttatataacaaacttctaactaatcacaactaacttcta |
31807492 |
T |
|
| Q |
201 |
cttccttaacaagtattaagcttattctaattaatatgtagctatatcttacacaaaaaagcaagcaaactgtcatctcttttatccaaaaccaatttga |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |
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| T |
31807491 |
cttccttaacaagtattaagcttattctaattaatatgtagctatatcttacacaaaaaggcaagcaacctgtcatctcttttatccaaaaccaatttga |
31807392 |
T |
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| Q |
301 |
catcacaaatacgaa------------------gcttcaaataactgttgtcgcattcaccatcaaactagttcttgagacgagtcttcgatcacatgtc |
382 |
Q |
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| T |
31807391 |
catcacaaatacgaagcttgaacataggttcaagcttcaaataactgtcgttgcattcaccgtcaaactagttcttgagacgagtcttcgatcacatgtc |
31807292 |
T |
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| Q |
383 |
aaaatcaagaaaccatacggtgatcgctcaaagtgtactttggcaaaatgtgggtcagaaat |
444 |
Q |
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| T |
31807291 |
agaatcaagaaaccatacggtgatcgctcaaagtgcactttggcaaaatgtgggtcagaaat |
31807230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 177; Significance: 3e-95; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 99 - 444
Target Start/End: Complemental strand, 25291088 - 25290722
Alignment:
| Q |
99 |
tatgaagaagttgatagactgttagtaggattcaatttacataatgatcttaatgtaattaacttatataacaaacttctaactaatcacaattaacttc |
198 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |
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| T |
25291088 |
tatgaagaagttcatagactgttagtaggattcaatttacataatgatcttaatgtaattaacttatataaaaaacttctaactaatcacaactaacttc |
25290989 |
T |
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| Q |
199 |
tacttccttaacaagtattaagcttattctaattaatatgtagctatatcttacacaaaaaagcaagcaa--actgtcatctcttttatccaaaaccaa- |
295 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||| | | | ||| || |||||||||||||||| |
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| T |
25290988 |
tacttccttaacaagtattaagctaattctaattaatatgtaactatatcttccacaaaaaagcaagtcaccagtctcaccttttttatccaaaaccaat |
25290889 |
T |
|
| Q |
296 |
tttgacatcacaaatacgaag------------------cttcaaataactgttgtcgcattcaccatcaaactagttcttgagacgagtcttcgatcac |
377 |
Q |
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| T |
25290888 |
tttgatatcacagatacaaagcttgaccgtaggttcaaacttcaaataactgccgtcgcattcactgtcaaattagttcttgggacgagtcttcgatcac |
25290789 |
T |
|
| Q |
378 |
atgtcaaaatcaagaaaccatacggtgatcgctcaaagtgtactttggcaaaatgtgggtcagaaat |
444 |
Q |
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| T |
25290788 |
atgtcagaatcaggaaaccatatggtgaccgctcaaagtgcactttggcaaaatgtggatctgaaat |
25290722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 45 - 95
Target Start/End: Complemental strand, 25291471 - 25291421
Alignment:
| Q |
45 |
tagtaggatcaactctcctcaatgttgttcctaccacatgaatttcaacag |
95 |
Q |
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|||||| ||||| ||||||| ||||||||||| | |||||||||||||||| |
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| T |
25291471 |
tagtagaatcaagtctcctccatgttgttcctgctacatgaatttcaacag |
25291421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 48 - 94
Target Start/End: Complemental strand, 5584707 - 5584661
Alignment:
| Q |
48 |
taggatcaactctcctcaatgttgttcctaccacatgaatttcaaca |
94 |
Q |
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| T |
5584707 |
taggataaagtctcctccatgttgttcctaccacatgaatttcaaca |
5584661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0627 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0627
Description:
Target: scaffold0627; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 400 - 444
Target Start/End: Original strand, 5617 - 5661
Alignment:
| Q |
400 |
cggtgatcgctcaaagtgtactttggcaaaatgtgggtcagaaat |
444 |
Q |
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| T |
5617 |
cggtgatcgctcaaagtgtaatttagcaaaatgtggttctgaaat |
5661 |
T |
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