View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17303_low_14 (Length: 432)
Name: NF17303_low_14
Description: NF17303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17303_low_14 |
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| [»] scaffold1063 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 13 - 311
Target Start/End: Original strand, 6942967 - 6943268
Alignment:
| Q |
13 |
tgaagcaaaaatggcatctttccataagcatcacagtatccgtatgcttaatccgaacctacaatatatggtagcaacaataacatgtcattatatccaa |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||||||| |
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| T |
6942967 |
tgaagcaaaaatggcatctttccataagcatcacagtatccgtatgcttcatccaaagctacaatatatggtagcaacaataacatgtcattatatccaa |
6943066 |
T |
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| Q |
113 |
atacttctgattaggctttctttaaagtgtaacctgaaggatttttcaagtaattatctcatcagcggatgtatccatgaattgataaaaacatgcacat |
212 |
Q |
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| T |
6943067 |
atacttctgattaggctttctttaaagtgtaacctgaaggatttttcaagtaattatctcatcagcggatgtatccatgaattgataaaaacatgcacat |
6943166 |
T |
|
| Q |
213 |
aagcttttgtatgtattttacacaataaaaaatagagaatttataaatgg---nnnnnnnnntaaagatgcattaagtttcaaccatactaagatccata |
309 |
Q |
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| T |
6943167 |
aagcttttgtatgtattttacacaataaaaaatagagaatttataaatggaaaaaaataaaataaagatgcattaagtttcaaccatacaaagatccata |
6943266 |
T |
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| Q |
310 |
tc |
311 |
Q |
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|| |
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| T |
6943267 |
tc |
6943268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 13 - 262
Target Start/End: Original strand, 6939792 - 6940044
Alignment:
| Q |
13 |
tgaagcaaaaatggcatctttccataagcatcacagtatccgtatgcttaatccgaacctacaatatatggtagcaacaataacatgtcattatatccaa |
112 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6939792 |
tgaagcaaaaatggcatctttccataagcatcacggtatccgtatgcttcatccaaacctacaatatatggtagcaacaataacatgtcattatatccaa |
6939891 |
T |
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| Q |
113 |
atacttctgattaggctttctttaaagtgtaacctgaaggatttttcaagtaattatctcatcagcggatgtatccatgaattgataaaaacatgcacat |
212 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
6939892 |
atacttctgattaggctttctttgaagtgtaacctgaaggatttttcaagtaattatctcatcagcggatgtatccatgaattgataaagacatgcacat |
6939991 |
T |
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| Q |
213 |
aagc---ttttgtatgtattttacacaataaaaaatagagaatttataaatgg |
262 |
Q |
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| T |
6939992 |
atgctttttttgtatgtattttacacaagaaaaaatagagcatttacaaatgg |
6940044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 141 - 246
Target Start/End: Complemental strand, 6787698 - 6787593
Alignment:
| Q |
141 |
gtaacctgaaggatttttcaagtaattatctcatcagcggatgtatccatgaattgataaaaacatgcacataagcttttgtatgtattttacacaataa |
240 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| ||||| |||||||||||||||||| |
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| T |
6787698 |
gtaatctgaaggatttttcaagtaattatctcatcagcggatgtattcatgaattgataaaaacatgtccataagattttgcatgtattttacacaataa |
6787599 |
T |
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| Q |
241 |
aaaata |
246 |
Q |
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|||||| |
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| T |
6787598 |
aaaata |
6787593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1063 (Bit Score: 91; Significance: 6e-44; HSPs: 2)
Name: scaffold1063
Description:
Target: scaffold1063; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 124 - 262
Target Start/End: Complemental strand, 3023 - 2882
Alignment:
| Q |
124 |
taggctttctttaaagtgtaacctgaaggatttttcaagtaattatctcatcagcggatgtatccatgaattgataaaaacatgcacat-aagcttttgt |
222 |
Q |
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||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||| |
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| T |
3023 |
taggctttctttaaagtataactcgaaggatttttcaagtaattatctcatcagcggatgtatccatgaattgataaaagcatgcccataaagcttttgc |
2924 |
T |
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| Q |
223 |
atgtattttacaca--ataaaaaatagagaatttataaatgg |
262 |
Q |
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|||||||||||||| | ||||||||||| |||||||||||| |
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| T |
2923 |
atgtattttacacaacacaaaaaatagagcatttataaatgg |
2882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1063; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 3106 - 3037
Alignment:
| Q |
19 |
aaaaatggcatctttccataagcatcacagtatccgtatgcttaatccgaacctacaatatatggtagca |
88 |
Q |
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||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||| ||||||||||| |
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| T |
3106 |
aaaaatggcatctttccataagcatcacagtatcctattgcttcatccaaacctacaacatatggtagca |
3037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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