View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17303_low_15 (Length: 419)
Name: NF17303_low_15
Description: NF17303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17303_low_15 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 18 - 402
Target Start/End: Complemental strand, 4395435 - 4395051
Alignment:
| Q |
18 |
ctatatgtattgaaactacaccacaaaaccttgtatttgctaattatggagtcaatgggagaagatccgggtcaaatgggtttgtttcttaattgaagta |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
4395435 |
ctatatgtattgaaactacaccacaaaaccttgtatttgctaattatggagtcaatgggagaagatccgggtcaaacgggtttgtttcttaattgaagtt |
4395336 |
T |
|
| Q |
118 |
atggtgagccatatgagtgatttattctagtagtatacgcaatatgcatcatgcatgtcaatggaagaaaactcagtattttgttttggtcttgacgcta |
217 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
4395335 |
atggtgagccatatgagtgatttatactagtagtatacgcaatatgcatcatgcatgtccatggaagaaaactcagtattttgttttggtcttgacgcca |
4395236 |
T |
|
| Q |
218 |
gtaaacttgttcttggggtctgcattttatatagctcatcggtgatcactttgctggatttttcagattcccatattggaaaagcaattcatcgatatca |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4395235 |
gtaaacttgttcttggggtctgcattttatatagctcatcggtgatcactttgctggatttttcagattcccatattggaaaagcaattcatcgatatca |
4395136 |
T |
|
| Q |
318 |
cctactacacaatagtatatttattttctttcttttttatctgcctcctctgagcctaatgtttcgtatcttctactgctacatc |
402 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4395135 |
cctactacacaatagtatattttttttctttcttttttatctgcctcctctgagcctaatgtttcgtatcttctactgctacatc |
4395051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University