View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17303_low_17 (Length: 395)
Name: NF17303_low_17
Description: NF17303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17303_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 115; Significance: 3e-58; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 19 - 209
Target Start/End: Original strand, 2503425 - 2503613
Alignment:
| Q |
19 |
taaaatcaactagttatctagagaacgagagagaacagactaatatcttgaaaacttaagttttcccatcgcaatttgggatatcatggtcattctcagt |
118 |
Q |
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| T |
2503425 |
taaaatcaactc-ttatctagagattgagagagaacagactcataacttgaaaacttcagttttccaatgacaggttgggatatcatgatcattctc-gt |
2503522 |
T |
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| Q |
119 |
gtttgttattagcttaattggcttaatttctttacacacttctctggtatgatagtgttgattactgcaaattaataattaaagtatatac |
209 |
Q |
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| T |
2503523 |
gtttgttattagcttagttggcttaattgctttacacacttctctggtatgatagcgttgattactgcaaattaataattaaagtatatac |
2503613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 128 - 213
Target Start/End: Complemental strand, 2643069 - 2642984
Alignment:
| Q |
128 |
tagcttaattggcttaatttctttacacacttctctggtatgatagtgttgattactgcaaattaataattaaagtatatacgact |
213 |
Q |
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| T |
2643069 |
tagcttaattgacttaatttctttacacacttctctggtatgatagtgttgattactgcaaattaataattaaagtatatacgact |
2642984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 18 - 129
Target Start/End: Complemental strand, 2643438 - 2643327
Alignment:
| Q |
18 |
ataaaatcaactagttatctagagaacgagagagaacagactaatatcttgaaaacttaagttttcccatcgcaatttgggatatcatggtcattctcag |
117 |
Q |
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| T |
2643438 |
ataaaatcaactagttatctagagatcaagagagaacagactcatatcttgaaaacttcagttttcccatgacagtttgggatagcatggtcattctcag |
2643339 |
T |
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| Q |
118 |
tgtttgttatta |
129 |
Q |
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| T |
2643338 |
tgtttgttatta |
2643327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 103 - 199
Target Start/End: Original strand, 2631965 - 2632061
Alignment:
| Q |
103 |
catggtcattctcagtgtttgttattagcttaattggcttaatttctttacacacttctctggtatgatagtgttgattactgcaaattaataatta |
199 |
Q |
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| T |
2631965 |
catggtcattctctgtgtttgtgattatcttaatagactttatttttttatacactagtctagtatgatagtgttgattactgcaaattaataatta |
2632061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 18 - 132
Target Start/End: Complemental strand, 7332757 - 7332644
Alignment:
| Q |
18 |
ataaaatcaactagttatctagagaacgagagagaacagactaatatcttgaaaacttaagttttcccatcgcaatttgggatatcatggtcattctcag |
117 |
Q |
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| T |
7332757 |
ataaaatcaactaattttctagagattgagagagaacagactcatttcttgaaa-cttcagctttcccatgatagtttgggatagcatggtcattctcag |
7332659 |
T |
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| Q |
118 |
tgtttgttattagct |
132 |
Q |
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| T |
7332658 |
tgtttgttatcagct |
7332644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 201
Target Start/End: Complemental strand, 7437882 - 7437799
Alignment:
| Q |
117 |
gtgtttgttattagcttaattggcttaatttctttacacacttctctggtatgatagtgttgattactgcaaattaataattaaa |
201 |
Q |
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| T |
7437882 |
gtgtttgttattagcgtaaataacttaattgctttatacactagtctggtatgatagtg-tgattagtgcaaaataattattaaa |
7437799 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 196
Target Start/End: Complemental strand, 7332634 - 7332589
Alignment:
| Q |
151 |
tacacacttctctggtatgatagtgttgattactgcaaattaataa |
196 |
Q |
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| T |
7332634 |
tacacacttctctggtatgatagcagtgattattgcaaattaataa |
7332589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 108 - 152
Target Start/End: Complemental strand, 7439067 - 7439023
Alignment:
| Q |
108 |
tcattctcagtgtttgttattagcttaattggcttaatttcttta |
152 |
Q |
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| T |
7439067 |
tcattctctgtgtttgttattagcttaattgacataattgcttta |
7439023 |
T |
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