View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17303_low_2 (Length: 668)
Name: NF17303_low_2
Description: NF17303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17303_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 268 - 472
Target Start/End: Complemental strand, 28216464 - 28216260
Alignment:
| Q |
268 |
atggtgtaaatggttggttacaaccattacaacttgacagcatcaattttagttgttacatcttaagtttaaagtttattatgatgcacgaaattaggag |
367 |
Q |
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| T |
28216464 |
atggtgtaaatggttggctacaaccattacaacttgacagcatcaattttagttgttacatcttaagtttaaagtttattatgatgcacgaaattaggag |
28216365 |
T |
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| Q |
368 |
tccttgggattataaatatgtttacaatcttagcatttggtaccacattacatactagaaaactcctatattattcttatcatttcatttaagtatttta |
467 |
Q |
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| T |
28216364 |
tccttaggattataaatatgtttacaatcttagcatttggtaccacattacatactagaaaactcctatattattcttattatttcattaaagtatttta |
28216265 |
T |
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| Q |
468 |
gtttt |
472 |
Q |
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||||| |
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| T |
28216264 |
gtttt |
28216260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 170; E-Value: 7e-91
Query Start/End: Original strand, 463 - 640
Target Start/End: Complemental strand, 28216246 - 28216069
Alignment:
| Q |
463 |
ttttagttttcattaggtagctcatccttatgatgagtgagtagttcccctagaacatggaaagtatatgacaagttttccataagtgaagaattggagt |
562 |
Q |
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| T |
28216246 |
ttttatttttcattaggtagctcatccttatgatgagtgagtagttcccctagaacatggaaagtatatgacaagttttccataagtgaagaattggagt |
28216147 |
T |
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| Q |
563 |
ttaaattttaataatgagaaaaaagatgcatatgtttagaagataaataatcccttaaagagattaatcttacggtta |
640 |
Q |
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| T |
28216146 |
ttaaattttaataatgagaaaaaagatgcatatgtttagaagataaataatcccttaaagagattaatctcacggtta |
28216069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 637 - 668
Target Start/End: Complemental strand, 28216048 - 28216017
Alignment:
| Q |
637 |
gttataaaaagaaaatgaggagattcttcatc |
668 |
Q |
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| T |
28216048 |
gttataaaaagaaaatgaggagattcttcatc |
28216017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 393 - 439
Target Start/End: Original strand, 17134314 - 17134360
Alignment:
| Q |
393 |
aatcttagcatttggtaccacattacatactagaaaactcctatatt |
439 |
Q |
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| T |
17134314 |
aatcttagcatttgacaccacattacatattagaaaactcttatatt |
17134360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 469 - 507
Target Start/End: Original strand, 21453239 - 21453277
Alignment:
| Q |
469 |
ttttcattaggtagctcatccttatgatgagtgagtagt |
507 |
Q |
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| T |
21453239 |
ttttcattgggtagctcatccttgtgatgagtgagtagt |
21453277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 469 - 510
Target Start/End: Original strand, 26774263 - 26774304
Alignment:
| Q |
469 |
ttttcattaggtagctcatccttatgatgagtgagtagttcc |
510 |
Q |
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| T |
26774263 |
ttttcactacgtagttcatccttatgatgagtgagtagttcc |
26774304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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