View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17303_low_23 (Length: 372)
Name: NF17303_low_23
Description: NF17303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17303_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 70 - 353
Target Start/End: Complemental strand, 10599710 - 10599431
Alignment:
| Q |
70 |
atcttatatcatggttattaatttataaacaaacactaaccggtaatgtcannnnnnnnnagatgctcgagaacaagcaattttgtgagctgacgttgga |
169 |
Q |
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| T |
10599710 |
atcttatatcatggttattaatttataaaca----ctaaccgttaatgtcttttttttttagatgctcgagaacaagcaatttcgtgagctgacgttgga |
10599615 |
T |
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| Q |
170 |
aaagaaaacgaccattatcaaggtcattgacgattgcggcaatcggtgggactatattgctgtttaccaatctctgcctgaaaaacaatttaaggttgga |
269 |
Q |
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| T |
10599614 |
aaagaaaacgaccattatcaaggtcattgacgattgctgcaatcggtgggactatattgctgtttaccaatctctgcctgaaaaacaatttaaggttgga |
10599515 |
T |
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| Q |
270 |
ggtcagtggaagaggctggtcgaagctcgaagagttaagcatggtgcatacatgattgttgttgctccaacggctggaaacaac |
353 |
Q |
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| T |
10599514 |
ggtcagtggaagaggctggtcgaagctcgaagagttaagcatggtgcatacatgattgttggtgctccaacggctggaaacaac |
10599431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 10599816 - 10599742
Alignment:
| Q |
1 |
tttccaacatgacatgtgttatatatatgtctt--atgctaacaatttcatttgtcagctgatgatgttgaatct |
73 |
Q |
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| T |
10599816 |
tttccaacgtgacatgtgttatatatatgtgttttatgctaacaatttcatttgtcagctgatgatgttgaatct |
10599742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 130 - 353
Target Start/End: Original strand, 6254609 - 6254832
Alignment:
| Q |
130 |
agatgctcgagaacaagcaattttgtgagctgacgttggaaaagaaaacgaccattatcaaggtcattgacgattgcggcaatcggtgggactatattgc |
229 |
Q |
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|||||||| || ||||||||||||||||||||| |||||||| ||| ||||||||||||| ||||||||||||||||||||||||||| |||| ||||| |
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| T |
6254609 |
agatgctccaggacaagcaattttgtgagctgatgttggaaaggaagacgaccattatcatggtcattgacgattgcggcaatcggtgagactgtattga |
6254708 |
T |
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| Q |
230 |
tgtttaccaatctctgcctgaaaaacaatttaaggttggaggtcagtggaagaggctggtcgaagctcgaagagttaagcatggtgcatacatgattgtt |
329 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
6254709 |
tgtttactaatctctgcctgaaaaacaatttaaggttggaggtcagtggaagaggctggtcgaaggtcgaagagttaagcatggtgcatacatgattgtt |
6254808 |
T |
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| Q |
330 |
gttgctccaacggctggaaacaac |
353 |
Q |
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| T |
6254809 |
cgtgctccaacggctggaaacaac |
6254832 |
T |
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