View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17303_low_24 (Length: 367)
Name: NF17303_low_24
Description: NF17303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17303_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 97; Significance: 1e-47; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 122 - 222
Target Start/End: Complemental strand, 26769644 - 26769544
Alignment:
| Q |
122 |
gtgacatattttatccaaaactagagatcgaagacgttttgatttaatagatgctgaaaggaacataatgatctttttaccttttgttgagtagtgctag |
221 |
Q |
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| T |
26769644 |
gtgacatattttatccaaaactagagatcgaagacgttttgatttaatagatactgaaaggaacataatgatctttttaccttttgttgagtagtgctag |
26769545 |
T |
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| Q |
222 |
a |
222 |
Q |
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| T |
26769544 |
a |
26769544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 261 - 350
Target Start/End: Complemental strand, 26769378 - 26769289
Alignment:
| Q |
261 |
aatggaagtccgatagaggagtccaaggtgtggaagggactaagacatggtgatcctttgtctctgttgcactttgcgatagcagctaaa |
350 |
Q |
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| T |
26769378 |
aatggaagtgcgatagaggagtccaaggtgtggaagggactaagacatggtgatcctttgtctctgttccactttgcgatagcagctaaa |
26769289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 52 - 116
Target Start/End: Complemental strand, 26769760 - 26769696
Alignment:
| Q |
52 |
tatatgcgtggtttcgccaagatggaagtgcagcgagtagaattgataggttcatgttgtctaat |
116 |
Q |
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| T |
26769760 |
tatatgcgtggtttcgccaagatggaagtgcagcgagtagaattgataggttgatgttgtctaat |
26769696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 26770396 - 26770352
Alignment:
| Q |
15 |
tatgcgagtcttataagatataataactacggaaagatatatgcg |
59 |
Q |
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| T |
26770396 |
tatgcgagtcttataagttataataactacggaaagatatatgcg |
26770352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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