View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17303_low_30 (Length: 326)
Name: NF17303_low_30
Description: NF17303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17303_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 130659 - 130936
Alignment:
| Q |
1 |
gatttgtttgttttctaaaattattttaattcttcctattatcatcatgccatgaatggaagattaatgtatttaacaattgtgataaagaaaatgaaag |
100 |
Q |
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| T |
130659 |
gattcgtttgttttctaaaattattttaattcttcctattatcatcatgccatgaatggaagattaatgtatttaacaattgtgataaagaaaatgaaag |
130758 |
T |
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| Q |
101 |
accaataaaggagagttcattttttaatatattgaaaaaagtgttgatgattgaagggaacatgtgatcccctttgaagaagggttgagggttgaacaag |
200 |
Q |
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| T |
130759 |
accaataaaggagagttcattttttaatatattgaaaatagtgttgatgattgaagggaacatgtgatcccctttgaaga-------agggttgaacaag |
130851 |
T |
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| Q |
201 |
gtatgaacattgatgattgtaggatcatgaatgttttgattgtagtgatggtagggaggagaattcatgacaatgaaagcaccag |
285 |
Q |
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| T |
130852 |
gtatgaacattgatgattgtaggatcatgaatgttttgattatagtgatggtagggaggagaattaatgacaatgaaagcaccag |
130936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 284
Target Start/End: Complemental strand, 9234401 - 9234365
Alignment:
| Q |
248 |
atggtagggaggagaattcatgacaatgaaagcacca |
284 |
Q |
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| T |
9234401 |
atggtagggaggggaattcatggcaatgaaagcacca |
9234365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 195 - 290
Target Start/End: Original strand, 22220617 - 22220712
Alignment:
| Q |
195 |
aacaaggtatgaacattgatgattgtaggatcatgaatgttttgattgtagtgatggtagggaggagaattcatgacaatgaaagcaccagttgtt |
290 |
Q |
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| T |
22220617 |
aacaatgtatgaacattgatgattgtaggatcataaaggttgtgattgtagtagtggttgggaggagaatccatgacaataaaagcaccaattgtt |
22220712 |
T |
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