View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17303_low_31 (Length: 323)
Name: NF17303_low_31
Description: NF17303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17303_low_31 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 323
Target Start/End: Original strand, 3355604 - 3355926
Alignment:
| Q |
1 |
tcattctaacaaacaaaaatcatctaaacaaaggcagggaacatagtaccaaaaatgtgaaaacgacaaaaagtttttcatgttgctatataaccaaaat |
100 |
Q |
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| T |
3355604 |
tcattctaacaaacaaaaatcatctaaacaaaggcagggaacatagtaccaaaaatgtgaaaacgacaaaaagtttttcatgttgctatataaccaaaat |
3355703 |
T |
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| Q |
101 |
gaattgaattctacattaaaagcaaataactgcacatcactcgacaagtacaatcttccaatttatttacaacgcctgctctcttctcatggcatgtttg |
200 |
Q |
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| T |
3355704 |
gaattgaattctacattaaaagcaaataactgcacatcactcgacaagtacaatcttccaatttatttacaccgcctgctctcttctcatggcatgtttg |
3355803 |
T |
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| Q |
201 |
gtatcacggtggattttccaaaatcactacgagccaaatgactttgcaaaagctaaactctgtagctttttcacaatcacagtgaatcaccagaaaaccc |
300 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||| |||| || |
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| T |
3355804 |
gtatcacagtggattttccaaaatcactacgagccaaatgactttgcaaaagctaaactctgtagcttttgaaaaatcacagtgactcaccggaaaccca |
3355903 |
T |
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| Q |
301 |
agggctttatcttggaattcata |
323 |
Q |
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| T |
3355904 |
agggctttatcttggaattcata |
3355926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 72
Target Start/End: Complemental strand, 9126591 - 9126553
Alignment:
| Q |
34 |
gcagggaacatagtaccaaaaatgtgaaaacgacaaaaa |
72 |
Q |
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| T |
9126591 |
gcagggaacatagcaccaaaaatgtgaaaacgacgaaaa |
9126553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 227
Target Start/End: Original strand, 42114939 - 42114972
Alignment:
| Q |
194 |
atgtttggtatcacggtggattttccaaaatcac |
227 |
Q |
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| T |
42114939 |
atgtttggtatcacagtggattttccaaaatcac |
42114972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 228
Target Start/End: Original strand, 12364962 - 12364998
Alignment:
| Q |
192 |
gcatgtttggtatcacggtggattttccaaaatcact |
228 |
Q |
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| T |
12364962 |
gcatgtttggtatcacggtagatttaccaaaatcact |
12364998 |
T |
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