View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17303_low_36 (Length: 303)
Name: NF17303_low_36
Description: NF17303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17303_low_36 |
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Alignment Details
Target: chr6 (Bit Score: 191; Significance: 1e-104; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 15 - 269
Target Start/End: Original strand, 30941576 - 30941830
Alignment:
| Q |
15 |
agttattgtggccacccaaacttcaaccttgattgtgaacatggcaacttgactattgagatcaaatcacaaaagtttcacatcattgatataaatcaaa |
114 |
Q |
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| T |
30941576 |
agttattgtggccacccaaacttcaaccttgattgtgaacatggcaacttgactattgagatcaagtcacaaaagtttcacatcattgatataaatcaaa |
30941675 |
T |
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| Q |
115 |
catctcgacttttgaggattgcacggttggatttatggagttatgatgatgatgctattgcttcttgtccagagaaatacatcaatgtaaacttagattt |
214 |
Q |
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| T |
30941676 |
catctcgacttttgaggattgcccggttggatttatggagtaatgatgctgctactattgtttcttgtcccaagaaatatatcattgtaaacctagattt |
30941775 |
T |
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| Q |
215 |
ggatttcttcaactacacttccaattatgaaaattataccctattgtatgagtgt |
269 |
Q |
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| T |
30941776 |
ggatttcttcaactacacttccaagtatgaaaagtatacactattgtacgagtgt |
30941830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 17 - 269
Target Start/End: Original strand, 30983474 - 30983726
Alignment:
| Q |
17 |
ttattgtggccacccaaacttcaaccttgattgtgaacatggcaacttgactattgagatcaaatcacaaaagtttcacatcattgatataaatcaaaca |
116 |
Q |
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| T |
30983474 |
ttattgtggtcatccaaacttcaaacttgattgtgaacatggcaacttgactattgaaattaagtcacaaaagtttcacatcattgatataaatcaaact |
30983573 |
T |
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| Q |
117 |
tctcgacttttgaggattgcacggttggatttatggagttatgatgatgatgctattgcttcttgtccagagaaatacatcaatgtaaacttagatttgg |
216 |
Q |
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| T |
30983574 |
tcacaagttttgaggattgcaaggttggatttatggagttatgattctgctactattgcttcttgtcccaagaaatatatcaatgtaaccctagattcgg |
30983673 |
T |
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| Q |
217 |
atttcttcaactacacttccaattatgaaaattataccctattgtatgagtgt |
269 |
Q |
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| T |
30983674 |
aattcttcaattacacttccaattatgagaagtatacgctattatatgagtgt |
30983726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 17 - 269
Target Start/End: Original strand, 30989638 - 30989890
Alignment:
| Q |
17 |
ttattgtggccacccaaacttcaaccttgattgtgaacatggcaacttgactattgagatcaaatcacaaaagtttcacatcattgatataaatcaaaca |
116 |
Q |
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| T |
30989638 |
ttattgtggtcatccaaacttcaaacttgattgtgaacatggcaacttgactattgaaattaagtcacaaaagtttcacatcattgatataaatcaaact |
30989737 |
T |
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| Q |
117 |
tctcgacttttgaggattgcacggttggatttatggagttatgatgatgatgctattgcttcttgtccagagaaatacatcaatgtaaacttagatttgg |
216 |
Q |
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| T |
30989738 |
tcacaagttttgaggattgcaaggttggatttatggagttatgattctgctactattgcttcttgtcccaagaaatatatcaatgtaaccctagattcgg |
30989837 |
T |
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| Q |
217 |
atttcttcaactacacttccaattatgaaaattataccctattgtatgagtgt |
269 |
Q |
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| T |
30989838 |
aattcttcaattacacttccaattatgagaagtatacgctattatatgagtgt |
30989890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 17 - 269
Target Start/End: Original strand, 31009359 - 31009611
Alignment:
| Q |
17 |
ttattgtggccacccaaacttcaaccttgattgtgaacatggcaacttgactattgagatcaaatcacaaaagtttcacatcattgatataaatcaaaca |
116 |
Q |
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| T |
31009359 |
ttattgtggtcatccaaacttcggagttgattgtgaacatggcaacttgactattgaaatcaagtcacaaaagtttcacatcattgatataaatcaaact |
31009458 |
T |
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| Q |
117 |
tctcgacttttgaggattgcacggttggatttatggagttatgatgatgatgctattgcttcttgtccagagaaatacatcaatgtaaacttagatttgg |
216 |
Q |
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| T |
31009459 |
tcacaagttttgaggattgcaaggttggatttatggagttatgattctgctactattgcttcttgtcccaagaaatatatcaatgtaaccctagattcgg |
31009558 |
T |
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| Q |
217 |
atttcttcaactacacttccaattatgaaaattataccctattgtatgagtgt |
269 |
Q |
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| T |
31009559 |
aattcttcaattacacttccaattatgagaagtatacgctattatatgagtgt |
31009611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 30977035 - 30977091
Alignment:
| Q |
17 |
ttattgtggccacccaaacttcaaccttgattgtgaacatggcaacttgactattga |
73 |
Q |
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| T |
30977035 |
ttattgtggtcatccaaacttcaaacttgattgtgaacatggcaacttgactattga |
30977091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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