View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17303_low_37 (Length: 291)

Name: NF17303_low_37
Description: NF17303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17303_low_37
NF17303_low_37
[»] chr5 (18 HSPs)
chr5 (37-255)||(30339762-30339980)
chr5 (37-249)||(30748297-30748509)
chr5 (1-255)||(29870834-29871088)
chr5 (33-254)||(30434471-30434692)
chr5 (1-247)||(30243573-30243819)
chr5 (37-255)||(30058936-30059154)
chr5 (37-291)||(30678477-30678727)
chr5 (1-255)||(29851947-29852201)
chr5 (52-259)||(30398658-30398865)
chr5 (40-210)||(4380357-4380527)
chr5 (76-255)||(30481980-30482159)
chr5 (100-254)||(17419191-17419345)
chr5 (3-149)||(30482158-30482304)
chr5 (107-246)||(29710277-29710416)
chr5 (40-242)||(30205102-30205304)
chr5 (117-241)||(30202743-30202867)
chr5 (175-243)||(17981534-17981602)
chr5 (138-242)||(30246138-30246242)
[»] chr7 (1 HSPs)
chr7 (40-252)||(26705914-26706126)
[»] chr4 (6 HSPs)
chr4 (85-291)||(20298032-20298242)
chr4 (37-148)||(20297912-20298023)
chr4 (46-246)||(20303875-20304074)
chr4 (116-241)||(20301381-20301503)
chr4 (109-246)||(52350551-52350688)
chr4 (175-251)||(13615444-13615520)
[»] chr1 (1 HSPs)
chr1 (175-252)||(7097997-7098074)


Alignment Details
Target: chr5 (Bit Score: 175; Significance: 3e-94; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 37 - 255
Target Start/End: Original strand, 30339762 - 30339980
Alignment:
Q  37 ttggagtccttaccagagcaaaattgggaaggtcttcaatcccttcgaactctaaagatttggaattgtgaaggattgcgatgcttgccggagggtattc 136  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  |  ||||||||||||||||||||||||||||||||||    
T  30339762 ttggagtccttaccagagcaaaattgggaaggtcttcaatcccttcgaactctacagatttatagctgtgaaggattgcgatgcttgccggagggtattc 30339861  T
Q  137 gacacctcacttctcttgagcttcttaatatctttgattgcccaacattagaggaacgatgcaaagagggaacaggggaggattgggacaagatagctca 236  Q
    ||||||||||||||||||||||||| | |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30339862 gacacctcacttctcttgagcttctgactatcattaattgcccaacattagaggaacgatgcaaagagggaacaggggaggattgggacaagatagctca 30339961  T
Q  237 tattccaaaaataaagttt 255  Q
    ||||||||| ||| |||||    
T  30339962 tattccaaatatacagttt 30339980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 37 - 249
Target Start/End: Complemental strand, 30748509 - 30748297
Alignment:
Q  37 ttggagtccttaccagagcaaaattgggaaggtcttcaatcccttcgaactctaaagatttggaattgtgaaggattgcgatgcttgccggagggtattc 136  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||  ||||  |||||||||||||||||||||||||||||    
T  30748509 ttggagtccttaccagagcaaaactgggaaggtcttcaatcccttcgagctctacagatttggggttgtagaggattgcgatgcttgccggagggtattc 30748410  T
Q  137 gacacctcacttctcttgagcttcttaatatctttgattgcccaacattagaggaacgatgcaaagagggaacaggggaggattgggacaagatagctca 236  Q
    |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  30748409 gacacctcacttctcttgagcttcttgatatcattgattgcccaacattagaggaacgatgcaaagagggaacatgggaggattgggacaagatagctca 30748310  T
Q  237 tattccaaaaata 249  Q
    |||||||||||||    
T  30748309 tattccaaaaata 30748297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 29871088 - 29870834
Alignment:
Q  1 tctcttcaatctctggaagtatatagtttccgacaattggagtccttaccagagcaaaattgggaaggtcttcaatcccttcgaactctaaagatttgga 100  Q
    ||||||| |||||||   |||||| |||||   |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||    
T  29871088 tctcttctatctctgtttgtatattgtttctctcaattggagtccttaccagagcaaaattgggaaggtcttcaatcccttcgaattttaaggatttgga 29870989  T
Q  101 attgtgaaggattgcgatgcttgccggagggtattcgacacctcacttctcttgagcttcttaatatctttgattgcccaacattagaggaacgatgcaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    ||    | |||||||||||||||||||||||||||    
T  29870988 attgtgaaggattgcgatgcttgccggagggtattcgacacctcacttcacttgagcttctggcaattgagggttgcccaacattagaggaacgatgcaa 29870889  T
Q  201 agagggaacaggggaggattgggacaagatagctcatattccaaaaataaagttt 255  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||| |||||    
T  29870888 agagggaacaggggaggattgggacaagatagctcatattccaataatacagttt 29870834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 33 - 254
Target Start/End: Complemental strand, 30434692 - 30434471
Alignment:
Q  33 acaattggagtccttaccagagcaaaattgggaaggtcttcaatcccttcgaactctaaagatttggaattgtgaaggattgcgatgcttgccggagggt 132  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||  |||||||  ||||  |||||||||||||||||||||||||    
T  30434692 acaattggagtccttaccagagcaaaactgggaaggtcttcaatcccttcgagctctactgatttggggttgtagaggattgcgatgcttgccggagggt 30434593  T
Q  133 attcgacacctcacttctcttgagcttcttaatatctttgattgcccaacattagaggaacgatgcaaagagggaacaggggaggattgggacaagatag 232  Q
    |||||||||||||||||||||||||||||   |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  30434592 attcgacacctcacttctcttgagcttctgtctatcattgattgcccaacattaaaggaacgatgcaaagagggaacaggggaggattgggacaagatag 30434493  T
Q  233 ctcatattccaaaaataaagtt 254  Q
    |||||||||||| |||| ||||    
T  30434492 ctcatattccaagaatagagtt 30434471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 30243573 - 30243819
Alignment:
Q  1 tctcttcaatctctggaagtatatagtttccgacaattggagtccttaccagagcaaaattgggaaggtcttcaatcccttcgaactctaaagatttgga 100  Q
    |||||||||||||||   ||| ||||||||| ||||||||||||||||||||||  ||||||||||||||||||||||||||||  ||||||||||   |    
T  30243573 tctcttcaatctctgtctgtaaatagtttcccacaattggagtccttaccagagacaaattgggaaggtcttcaatcccttcgatttctaaagattcata 30243672  T
Q  101 attgtgaaggattgcgatgcttgccggagggtattcgacacctcacttctcttgagcttcttaatatctttgattgcccaacattagaggaacgatgcaa 200  Q
      |||||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||| | | | || |||||||||||||||||||||||    
T  30243673 gatgtgaaggattgcgatgcttgccggagggtattcgacacctcacttctcttgaggttttgaatatttataaatgtccaacattagaggaacgatgcaa 30243772  T
Q  201 agagggaacaggggaggattgggacaagatagctcatattccaaaaa 247  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  30243773 agagggaacaggggaggattgggacaagatagctcatattccaaaaa 30243819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 37 - 255
Target Start/End: Complemental strand, 30059154 - 30058936
Alignment:
Q  37 ttggagtccttaccagagcaaaattgggaaggtcttcaatcccttcgaactctaaagatttggaattgtgaaggattgcgatgcttgccggagggtattc 136  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||  |  ||||||||||||||||| ||||||||||||||||    
T  30059154 ttggagtccttaccagagcaaaattgggaaggtcttcaatcccttcgaactctacatatttatagctgtgaaggattgcgatgtttgccggagggtattc 30059055  T
Q  137 gacacctcacttctcttgagcttcttaatatctttgattgcccaacattagaggaacgatgcaaagagggaacaggggaggattgggacaagatagctca 236  Q
    ||||||||||||||||||||||||| | |||| ||| ||||| ||||||| |||||||||||||  || |||||||||||||||||||||||||| ||||    
T  30059054 gacacctcacttctcttgagcttctgactatcattggttgccgaacattaaaggaacgatgcaagaagcgaacaggggaggattgggacaagatatctca 30058955  T
Q  237 tattccaaaaataaagttt 255  Q
    ||||||||||||| |||||    
T  30058954 tattccaaaaatacagttt 30058936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 37 - 291
Target Start/End: Original strand, 30678477 - 30678727
Alignment:
Q  37 ttggagtccttaccagagcaaaattgggaaggtcttcaatcccttcgaactctaaagatttggaattgtgaaggattgcgatgcttgccggagggtattc 136  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  30678477 ttggagtccttaccagagcaaaattgggaaggtcttcaatcccttcgaactctaaagattcgtaattgtgaaggattgcgatgcttgccggagggtattc 30678576  T
Q  137 gacacctcacttctcttgagcttcttaatatctttgattgcccaacattagag-gaacgatgcaaagagggaacaggggaggattgggacaagatagctc 235  Q
    |||||||||| |||||||        ||||| | | | || |||||||| | | ||| | |||||||||||||  |||||||||||||||||||||||||    
T  30678577 gacacctcacatctcttg--------aatatttataaatgtccaacatttgtgagaagggtgcaaagagggaatgggggaggattgggacaagatagctc 30678668  T
Q  236 atattccaaaaataaagtttgagttttaatg---ggattaagaagcagagacgtttacc 291  Q
    |||||||||||||| ||||| ||||| ||||   |||||||||||||||||||||||||    
T  30678669 atattccaaaaatacagtttaagtttgaatgggaggattaagaagcagagacgtttacc 30678727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 29852201 - 29851947
Alignment:
Q  1 tctcttcaatctctggaagtatatagtttccgacaattggagtccttaccagagcaaaattgggaaggtcttcaatcccttcgaactctaaagatttgga 100  Q
    ||||||||||||||||  ||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||        
T  29852201 tctcttcaatctctggttgtaaattgtttcccacaattggagtccttaccagagcaaaattgggaaggtcttcaatcccttcgaactctacggattatat 29852102  T
Q  101 attgtgaaggattgcgatgcttgccggagggtattcgacacctcacttctcttgagcttcttaatatctttgattgcccaacattagaggaacgatgcaa 200  Q
    ||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||    ||     ||||||||||||||||||||||||||||    
T  29852101 attgtaaaggattgagatgcttgccggagggtattggacacctcacttctcttgagcttctgtcaattaaaaattgcccaacattagaggaacgatgcaa 29852002  T
Q  201 agagggaacaggggaggattgggacaagatagctcatattccaaaaataaagttt 255  Q
    || ||||||| | |||||||||||||||||| ||||||||||||| ||| |||||    
T  29852001 agtgggaacatgtgaggattgggacaagatatctcatattccaaatatacagttt 29851947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 52 - 259
Target Start/End: Complemental strand, 30398865 - 30398658
Alignment:
Q  52 gagcaaaattgggaaggtcttcaatcccttcgaactctaaagatttggaattgtgaaggattgcgatgcttgccggagggtattcgacacctcacttctc 151  Q
    |||||||||||||||||||| |||||||||| |  |||| | ||||  |||||| ||| |||||||||||| |||||||||||| |||||||||||||||    
T  30398865 gagcaaaattgggaaggtctgcaatcccttcaatatctatatatttctaattgtaaagaattgcgatgctttccggagggtattagacacctcacttctc 30398766  T
Q  152 ttgagcttcttaatatctttgattgcccaacattagaggaacgatgcaaagagggaacaggggaggattgggacaagatagctcatattccaaaaataaa 251  Q
    ||||| |||| |  |||  |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  30398765 ttgaggttctgacaatcaatgattgcccaacattaaaggaacgatgcaaagagggaacaggggaggattgggacaagatagctcatattccaaaaataca 30398666  T
Q  252 gtttgagt 259  Q
    ||| ||||    
T  30398665 gttggagt 30398658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 40 - 210
Target Start/End: Complemental strand, 4380527 - 4380357
Alignment:
Q  40 gagtccttaccagagcaaaattgggaaggtcttcaatcccttcgaactctaaagatttggaattgtgaaggattgcgatgcttgccggagggtattcgac 139  Q
    ||||||||||||||||||||||| |||||||||||||||||| | ||||||| ||||||| ||||  |||||||||||||||||||||||||||||||||    
T  4380527 gagtccttaccagagcaaaattgagaaggtcttcaatcccttaggactctaacgatttgggattgcaaaggattgcgatgcttgccggagggtattcgac 4380428  T
Q  140 acctcacttctcttgagcttcttaatatctttgattgcccaacattagaggaacgatgcaaagagggaaca 210  Q
    ||||||||||||||||| |||| |  ||| ||| |||||||||||||||||||||||||||||||||||||    
T  4380427 acctcacttctcttgaggttctgagaatcattggttgcccaacattagaggaacgatgcaaagagggaaca 4380357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 76 - 255
Target Start/End: Complemental strand, 30482159 - 30481980
Alignment:
Q  76 tcccttcgaactctaaagatttggaattgtgaaggattgcgatgcttgccggagggtattcgacacctcacttctcttgagcttcttaatatctttgatt 175  Q
    |||||||||| |||| ||||||  |  ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |  || |  || |    
T  30482159 tcccttcgaaatctacagatttatagctgtaaaggattgcgatgcttgccggagggtattcgacacctcacttctcttgaggttctgacaatttgggaat 30482060  T
Q  176 gcccaacattagaggaacgatgcaaagagggaacaggggaggattgggacaagatagctcatattccaaaaataaagttt 255  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||    
T  30482059 gcccaacattagaggaacgatgcaaagagggaacatgggaggattgggacaagatagctcatattccaaaaatacagttt 30481980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 100 - 254
Target Start/End: Original strand, 17419191 - 17419345
Alignment:
Q  100 aattgtgaaggattgcgatgcttgccggagggtattcgacacctcacttctcttgagcttcttaatatctttgattgcccaacattagaggaacgatgca 199  Q
    ||||||||||| ||| |||||||||  |||||||||||||||||||||||||  ||| |||| || || | ||| | |||||||||||||||||||||||    
T  17419191 aattgtgaaggtttgagatgcttgctagagggtattcgacacctcacttctcccgagtttctgaacatttatgactccccaacattagaggaacgatgca 17419290  T
Q  200 aagagggaacaggggaggattgggacaagatagctcatattccaaaaataaagtt 254  Q
    | |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  17419291 aggagggaaccggggaggattgggacaagatagctcatattccaaaaataaagtt 17419345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 3 - 149
Target Start/End: Complemental strand, 30482304 - 30482158
Alignment:
Q  3 tcttcaatctctggaagtatatagtttccgacaattggagtccttaccagagcaaaattgggaaggtcttcaatcccttcgaactctaaagatttggaat 102  Q
    |||||||| |||||||||| || | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||| || |    
T  30482304 tcttcaatatctggaagtagattggttcccacaattggagtccttaccagagcaaaattgggaaggtcttcaatcccttcgagctctacacatttcgagt 30482205  T
Q  103 tgtgaaggattgcgatgcttgccggagggtattcgacacctcacttc 149  Q
    |||  ||||||| ||||||||||||||||||||||||||||||||||    
T  30482204 tgtagaggattgagatgcttgccggagggtattcgacacctcacttc 30482158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 107 - 246
Target Start/End: Original strand, 29710277 - 29710416
Alignment:
Q  107 aaggattgcgatgcttgccggagggtattcgacacctcacttctcttgagcttcttaatatctttgattgcccaacattagaggaacgatgcaaagaggg 206  Q
    |||||||||||||||| ||||||||||||   | |||||||||||||||| ||||  || | | | ||| | |||||||||||||||||||||| |||||    
T  29710277 aaggattgcgatgctttccggagggtattgctcgcctcacttctcttgaggttctgtatttttataatttctcaacattagaggaacgatgcaaggaggg 29710376  T
Q  207 aacaggggaggattgggacaagatagctcatattccaaaa 246  Q
    | || ||||||||| |||||||||||| ||| ||||||||    
T  29710377 agcaagggaggattaggacaagatagcgcatgttccaaaa 29710416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 40 - 242
Target Start/End: Complemental strand, 30205304 - 30205102
Alignment:
Q  40 gagtccttaccagagcaaaattgggaaggtcttcaatcccttcgaactctaaagatttggaattgtgaaggattgcgatgcttgccggagggtattcgac 139  Q
    ||||| |||||| || ||| |||||||||||| |||||||| ||||||||| | |||||   |||| ||| | || ||||||| ||||| ||||||||||    
T  30205304 gagtctttaccaaaggaaatttgggaaggtctgcaatccctccgaactctagatatttgtcgttgtaaagaactgagatgcttaccggaaggtattcgac 30205205  T
Q  140 acctcacttctcttgagcttcttaatatctttgattgcccaacattagaggaacgatgcaaagagggaacaggggaggattgggacaagatagctcatat 239  Q
    | ||||||||||| |||||||| |  ||   || ||| |||||| |||| || |||||||| ||||||||||| ||||| ||| |||||||| | |||||    
T  30205204 atctcacttctctggagcttctgacaattcgtggttgtccaacactagaagagcgatgcaaggagggaacaggagaggactggtacaagatatcgcatat 30205105  T
Q  240 tcc 242  Q
    |||    
T  30205104 tcc 30205102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 117 - 241
Target Start/End: Complemental strand, 30202867 - 30202743
Alignment:
Q  117 atgcttgccggagggtattcgacacctcacttctcttgagcttcttaatatctttgattgcccaacattagaggaacgatgcaaagagggaacaggggag 216  Q
    ||||||||  || |||||| ||||||||||||| |||||  | || |  || || | |||||||| |||  ||||||||||||| |||||||||||||||    
T  30202867 atgcttgctagaaggtattagacacctcacttcacttgatttgctgacaattttcggttgcccaatattgaaggaacgatgcaaggagggaacaggggag 30202768  T
Q  217 gattgggacaagatagctcatattc 241  Q
     | |||||||||||||| |||||||    
T  30202767 aactgggacaagatagcacatattc 30202743  T

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Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 243
Target Start/End: Complemental strand, 17981602 - 17981534
Alignment:
Q  175 tgcccaacattagaggaacgatgcaaagagggaacaggggaggattgggacaagatagctcatattcca 243  Q
    ||||||||||| ||| | |||||||| |||||||| || || || |||||||||||||| |||||||||    
T  17981602 tgcccaacattggagaagcgatgcaatgagggaaccggagaagactgggacaagatagcccatattcca 17981534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 242
Target Start/End: Original strand, 30246138 - 30246242
Alignment:
Q  138 acacctcacttctcttgagcttcttaatatctttgattgcccaacattagaggaacgatgcaaagagggaacaggggaggattgggacaagatagctcat 237  Q
    ||||||||||||||| ||| |||| |||||   | |||  ||||||||| |||| ||||||||  |||  ||| |||||||| ||||||||||| |||||    
T  30246138 acacctcacttctctcgaggttctgaatattcatcattctccaacattaaaggagcgatgcaagaaggagacatgggaggatcgggacaagatatctcat 30246237  T
Q  238 attcc 242  Q
    |||||    
T  30246238 attcc 30246242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 134; Significance: 9e-70; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 40 - 252
Target Start/End: Complemental strand, 26706126 - 26705914
Alignment:
Q  40 gagtccttaccagagcaaaattgggaaggtcttcaatcccttcgaactctaaagatttggaattgtgaaggattgcgatgcttgccggagggtattcgac 139  Q
    |||||| |||||||| |||  ||||||||||||||||||||| | |||||| |||||||| ||||| ||||| ||||||||||||| |||||||||||||    
T  26706126 gagtccctaccagagaaaatgtgggaaggtcttcaatcccttaggactctagagatttgggattgtaaaggaatgcgatgcttgccagagggtattcgac 26706027  T
Q  140 acctcacttctcttgagcttcttaatatctttga-ttgcccaacattagaggaacgatgcaaagagggaacaggggaggattgggacaagatagctcata 238  Q
    ||||||||||||||||| |||| |  || || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26706026 acctcacttctcttgagtttctgagaat-ttggagttgcccaacattagaggaacgatgcaaagagggaacaggggaggattgggacaagatagctcata 26705928  T
Q  239 ttccaaaaataaag 252  Q
    ||||||||||||||    
T  26705927 ttccaaaaataaag 26705914  T

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Target: chr4 (Bit Score: 101; Significance: 4e-50; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 85 - 291
Target Start/End: Original strand, 20298032 - 20298242
Alignment:
Q  85 actctaaagatttggaattgtgaaggattgcgatgcttgccggagggtattcgacacctcacttctcttgagcttcttaatatctttgattgcccaacat 184  Q
    |||||||||||||||  |||||||||||||| ||||||||| || || |||| |||||||||||||||||||||||| | ||||  | ||||||| ||||    
T  20298032 actctaaagatttggggttgtgaaggattgcaatgcttgccagaaggcattcaacacctcacttctcttgagcttctgactatcggttattgccccacat 20298131  T
Q  185 tagaggaacgatgcaaagagggaacaggggaggattgggacaagatagctcatattccaaaaataaagtt---tgagtttt-aatgggattaagaagcag 280  Q
    || ||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |  |   |||||||| ||||||||||||| |||     
T  20298132 taaagttacgatgcaaagagggaacaggggaggattgggacaagatagctcatattccaaaaagagatattcgtgagttttgaatgggattaagacgcaa 20298231  T
Q  281 agacgtttacc 291  Q
    |||||||||||    
T  20298232 agacgtttacc 20298242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 37 - 148
Target Start/End: Original strand, 20297912 - 20298023
Alignment:
Q  37 ttggagtccttaccagagcaaaattgggaaggtcttcaatcccttcgaactctaaagatttggaattgtgaaggattgcgatgcttgccggagggtattc 136  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||   ||| |  ||||| ||||||||| ||||||||||||||||||||    
T  20297912 ttggagtccttaccagagcaaatttgggaaggtcttcaatcccttcgaactctaggaattagttattgtaaaggattgcaatgcttgccggagggtattc 20298011  T
Q  137 gacacctcactt 148  Q
     |||||||||||    
T  20298012 aacacctcactt 20298023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 46 - 246
Target Start/End: Original strand, 20303875 - 20304074
Alignment:
Q  46 ttaccagagcaaaattgggaaggtcttcaatcccttcgaactctaaagatttggaattgtgaaggattgcgatgcttgccggagggtattcgacacctca 145  Q
    ||||||||| ||| ||||||||||||  |||||||| ||||| | | |||| | | |||| |||||||| |||||||||| || |||||||||  |||||    
T  20303875 ttaccagagaaaatttgggaaggtctgaaatcccttagaactatgatgattcgtagttgtaaaggattgagatgcttgcctgaaggtattcgattcctca 20303974  T
Q  146 cttctcttgagcttcttaatatctttgattgcccaacattagaggaacgatgcaaagagggaacaggggaggattgggacaagatagctcatattccaaa 245  Q
    |||| |||||| || | | ||| | ||| |||||||||||| ||||||| |||||   ||||||||| ||||||| |||||||||||| |||||||||||    
T  20303975 cttcacttgaggttttgagtatttatgaatgcccaacattaaaggaacggtgcaagacgggaacaggcgaggatt-ggacaagatagcgcatattccaaa 20304073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 116 - 241
Target Start/End: Original strand, 20301381 - 20301503
Alignment:
Q  116 gatgcttgccggagggtattcgacacctcacttctcttgagcttcttaatatctttgattgcccaacattagaggaacgatgcaaagagggaacagggga 215  Q
    |||||||| ||||||||||| ||||||||| |||||| ||| |||| ||||   || |||| |||||| || |||| | |||||| |||| |||||| ||    
T  20301381 gatgcttgtcggagggtatttgacacctcatttctctcgaggttctgaata---ttcattgtccaacaataaaggagcaatgcaaggaggaaacaggaga 20301477  T
Q  216 ggattgggacaagatagctcatattc 241  Q
    ||||||  |||||||| |||||||||    
T  20301478 ggattgtaacaagatatctcatattc 20301503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 109 - 246
Target Start/End: Complemental strand, 52350688 - 52350551
Alignment:
Q  109 ggattgcgatgcttgccggagggtattcgacacctcacttctcttgagcttcttaatatctttgattgcccaacattagaggaacgatgcaaagagggaa 208  Q
    |||||| ||| |||||| ||  |||||||| | |||||||| |||||| | || | ||| | |||||||||||||||| |||| ||||| || || ||||    
T  52350688 ggattgagatccttgccagaatgtattcgaaatctcacttcacttgaggtactgactatttgtgattgcccaacattaaaggagcgatgtaatgaaggaa 52350589  T
Q  209 caggggaggattgggacaagatagctcatattccaaaa 246  Q
    |||||||||| |  ||||| ||||| || |||||||||    
T  52350588 caggggaggactatgacaaaatagcgcacattccaaaa 52350551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 175 - 251
Target Start/End: Complemental strand, 13615520 - 13615444
Alignment:
Q  175 tgcccaacattagaggaacgatgcaaagagggaacaggggaggattgggacaagatagctcatattccaaaaataaa 251  Q
    |||||||||||  || | |||||||| ||||||||| |||| || |||||||||||||| |||||||||||| ||||    
T  13615520 tgcccaacattgaagaagcgatgcaaggagggaacatgggaagactgggacaagatagcgcatattccaaaactaaa 13615444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 175 - 252
Target Start/End: Complemental strand, 7098074 - 7097997
Alignment:
Q  175 tgcccaacattagaggaacgatgcaaagagggaacaggggaggattgggacaagatagctcatattccaaaaataaag 252  Q
    |||||||||||   ||| |||||||| |||||||||||||| || |||||||||||||| |||||||||||| |||||    
T  7098074 tgcccaacattgacggagcgatgcaaggagggaacaggggaagactgggacaagatagcccatattccaaaactaaag 7097997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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