View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17303_low_38 (Length: 288)

Name: NF17303_low_38
Description: NF17303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17303_low_38
NF17303_low_38
[»] chr5 (15 HSPs)
chr5 (1-248)||(30434200-30434447)
chr5 (1-248)||(30243852-30244101)
chr5 (1-68)||(30340017-30340084)
chr5 (1-68)||(30748201-30748268)
chr5 (1-68)||(30058855-30058922)
chr5 (1-68)||(29870744-29870811)
chr5 (1-68)||(30481890-30481957)
chr5 (1-64)||(30714564-30714627)
chr5 (1-68)||(30678720-30678788)
chr5 (3-64)||(29851863-29851925)
chr5 (2-68)||(30058596-30058667)
chr5 (75-152)||(40661590-40661667)
chr5 (219-248)||(30340231-30340260)
chr5 (219-248)||(30481726-30481755)
chr5 (219-248)||(30748025-30748054)
[»] chr7 (1 HSPs)
chr7 (1-68)||(26705819-26705886)


Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 30434447 - 30434200
Alignment:
Q  1 cgtttacccttatctgcctcaatcaccatcgcaaaattcaattttactggtaggatctctatttccccctaaaatacacccttcttttgtttggctttta 100  Q
    |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  30434447 cgtttacccttatctgcctcaatcaccatcgcaaaaatctattttactggtaggatctctatttccccctaaaatacacccttcttttgtttggatttta 30434348  T
Q  101 agtgattaatttactcgaattttattcaaaaatcgttatatattctcattatagggtgatttgcaggcttttcttttgagttcttttgaacgcatccccc 200  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| | |||||||    
T  30434347 agtgattaattgactcgaattttattcaaaaatcgttatatattctcattataggatgatttgcaggcttttctgttgagttcttttgaaggtatccccc 30434248  T
Q  201 aaaagatatgttctaatattctaattcaggtcattttcttcatcatag 248  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  30434247 aaaagatatgttctaatattctaattcaggtaattttcttcatcatag 30434200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 30243852 - 30244101
Alignment:
Q  1 cgtttacccttatctgcctcaatcaccatcgcaaaattcaattttactggtaggatctctatttccccctaaaatacacccttcttttgtttggctttta 100  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||    
T  30243852 cgtttacccttatctgcctcaatcaccatcgcaaaaatcaattttactggtaggatctctatttccccctaaaatacacccttcttatgtttggatttta 30243951  T
Q  101 agtgattaatttactcgaattttattcaaaaatcgttatatattctcattatagggtgatttgcaggcttttcttttgagttcttttgaacgcatccccc 200  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||    
T  30243952 agtgattaatttactcgaattttattaaaaaatcgttatatattctcattataggatgatttgcaggcttttctgttgagttcttttgaacgcatccccc 30244051  T
Q  201 aaaag--atatgttctaatattctaattcaggtcattttcttcatcatag 248  Q
    |||||  |||||||||||||||||||||||||| ||||||||||||||||    
T  30244052 aaaagatatatgttctaatattctaattcaggtaattttcttcatcatag 30244101  T

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Target: chr5; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 30340017 - 30340084
Alignment:
Q  1 cgtttacccttatctgcctcaatcaccatcgcaaaattcaattttactggtaggatctctatttcccc 68  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  30340017 cgtttacccttatctgcctcaatcaccatcgcaaaattcaattttactggtaagatctctatttcccc 30340084  T

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Target: chr5; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 30748268 - 30748201
Alignment:
Q  1 cgtttacccttatctgcctcaatcaccatcgcaaaattcaattttactggtaggatctctatttcccc 68  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  30748268 cgtttacccttatctgcctcaatcacaatcgcaaaattcaattttactggtaagatctctatttcccc 30748201  T

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Target: chr5; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 30058922 - 30058855
Alignment:
Q  1 cgtttacccttatctgcctcaatcaccatcgcaaaattcaattttactggtaggatctctatttcccc 68  Q
    ||||||||||||||||||||| | |||||||||||| |||||||||||||||||||||| ||||||||    
T  30058922 cgtttacccttatctgcctcattaaccatcgcaaaaatcaattttactggtaggatctcaatttcccc 30058855  T

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Target: chr5; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 29870811 - 29870744
Alignment:
Q  1 cgtttacccttatctgcctcaatcaccatcgcaaaattcaattttactggtaggatctctatttcccc 68  Q
    |||||||||||||||||| |||||| |||||||||| ||||||||||| |||||||||| ||||||||    
T  29870811 cgtttacccttatctgccacaatcaacatcgcaaaaatcaattttacttgtaggatctcaatttcccc 29870744  T

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Target: chr5; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 30481957 - 30481890
Alignment:
Q  1 cgtttacccttatctgcctcaatcaccatcgcaaaattcaattttactggtaggatctctatttcccc 68  Q
    |||||||||||||||||| |||||| |||||||||| ||||||||||||||| |||||| ||||||||    
T  30481957 cgtttacccttatctgccacaatcaacatcgcaaaaatcaattttactggtaagatctcaatttcccc 30481890  T

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Target: chr5; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 30714564 - 30714627
Alignment:
Q  1 cgtttacccttatctgcctcaatcaccatcgcaaaattcaattttactggtaggatctctattt 64  Q
    ||||||||||||||||||||| |  ||||| ||||| |||||||||||||||||||||||||||    
T  30714564 cgtttacccttatctgcctcattagccatcacaaaaatcaattttactggtaggatctctattt 30714627  T

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Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 30678720 - 30678788
Alignment:
Q  1 cgtttaccctt-atctgcctcaatcaccatcgcaaaattcaattttactggtaggatctctatttcccc 68  Q
    ||||||||||| |||||||| |||||||||||||||| |  ||||||||||||||||||| ||||||||    
T  30678720 cgtttaccctttatctgccttaatcaccatcgcaaaaatatattttactggtaggatctcaatttcccc 30678788  T

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Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 64
Target Start/End: Complemental strand, 29851925 - 29851863
Alignment:
Q  3 tttacccttatctg-cctcaatcaccatcgcaaaattcaattttactggtaggatctctattt 64  Q
    |||||||||||||| |||||||||||||||||||  || |||||||||||||| |||||||||    
T  29851925 tttacccttatctggcctcaatcaccatcgcaaagatctattttactggtaggctctctattt 29851863  T

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Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 68
Target Start/End: Complemental strand, 30058667 - 30058596
Alignment:
Q  2 gtttacccttatctg-cctcaatcaccatcgcaaaattcaat----tttactggtaggatctctatttcccc 68  Q
    ||||||||||||||| |||| |||||||||||||||||||||    || ||||||| |||||||||||||||    
T  30058667 gtttacccttatctggcctcgatcaccatcgcaaaattcaattcacttaactggtaagatctctatttcccc 30058596  T

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Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 75 - 152
Target Start/End: Complemental strand, 40661667 - 40661590
Alignment:
Q  75 tacacccttcttttgtttggcttttaagtgattaatttactcgaattttattcaaaaatcgttatatattctcattat 152  Q
    ||||||||| || ||||||| ||| ||||| | |||| ||| || |||||||||||||| ||| ||||||||||||||    
T  40661667 tacaccctttttgtgtttggatttcaagtgctcaattgactggatttttattcaaaaattgttgtatattctcattat 40661590  T

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Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 248
Target Start/End: Original strand, 30340231 - 30340260
Alignment:
Q  219 ttctaattcaggtcattttcttcatcatag 248  Q
    ||||||||||||||||||||||||||||||    
T  30340231 ttctaattcaggtcattttcttcatcatag 30340260  T

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Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 248
Target Start/End: Complemental strand, 30481755 - 30481726
Alignment:
Q  219 ttctaattcaggtcattttcttcatcatag 248  Q
    ||||||||||||||||||||||||||||||    
T  30481755 ttctaattcaggtcattttcttcatcatag 30481726  T

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Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 248
Target Start/End: Complemental strand, 30748054 - 30748025
Alignment:
Q  219 ttctaattcaggtcattttcttcatcatag 248  Q
    ||||||||||||||||||||||||||||||    
T  30748054 ttctaattcaggtcattttcttcatcatag 30748025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 26705886 - 26705819
Alignment:
Q  1 cgtttacccttatctgcctcaatcaccatcgcaaaattcaattttactggtaggatctctatttcccc 68  Q
    |||||||||||||||||||||||||||||| ||||| || |||||| ||||| ||||||| |||||||    
T  26705886 cgtttacccttatctgcctcaatcaccatcacaaaaatctattttagtggtacgatctctgtttcccc 26705819  T

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