View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17303_low_4 (Length: 609)
Name: NF17303_low_4
Description: NF17303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17303_low_4 |
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| [»] scaffold0040 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 414; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 74 - 597
Target Start/End: Original strand, 10741633 - 10742149
Alignment:
| Q |
74 |
ttaaatgattcaagaattctgaaaaatgaaatttgctgttagttcttagcttcgcttttttactctaaaatttatcgatgagtcnnnnnnngttgagttt |
173 |
Q |
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| T |
10741633 |
ttaaatgattcaagaattctgaaaaattaaatttgctgttagttcttagcttcgcttttttactctaaaatttatcgatgagtctttttttgttgagttt |
10741732 |
T |
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| Q |
174 |
agtgactatacactgactttnnnnnnnntccatggtcatccaaaatcacatttttctatgatgtcattttaatctattacatcttaaaatttatcaataa |
273 |
Q |
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| T |
10741733 |
agtgactatacactgacgttaaaaaaaatccatggtcatccaaaatcacattttactatgatgtcattttaatctattacttcttaaaatttatcaataa |
10741832 |
T |
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| Q |
274 |
gtatctgcatcctcattgttacagcctaggatcgaacctgctcaccacatttccctcttccctcgtccgtgtgtgtttatttgagtatgtgttgaacact |
373 |
Q |
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| T |
10741833 |
gtatctgcatcctcattgttacagcctgggatcgaacctgctcaccacatttcc-------ctcgtccgtgtgtgtttatttgagtatgtgttgaacact |
10741925 |
T |
|
| Q |
374 |
cggccaatacaaaaaagaactatgtggcttagatttgattggaagtttgtgtaaaattatcatacaccatcaattcgtagtcatcaaactcttttctgtt |
473 |
Q |
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| T |
10741926 |
cggccaatacaaaaaagaactatgtggcttagatttgattggaagtttgtgtaaaattatcatacaccatcaattcgtagtcatcaaactcttttctgtt |
10742025 |
T |
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| Q |
474 |
tcggattacatgatctgttggattcctctattacacggaccctaccgtctttcaaattcgttgtcatcatatcccttgttgtacatttatca-atagcaa |
572 |
Q |
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| T |
10742026 |
tcggattacatgatctgttggattcctctattacacggaccctaccgtctttcaaattcgttgtcatcatatcccttgtagtaca-ttatcacatagcaa |
10742124 |
T |
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| Q |
573 |
tcactatccaccaattatttaaagt |
597 |
Q |
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| T |
10742125 |
tcactatccaccaattatttaaagt |
10742149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 10741496 - 10741563
Alignment:
| Q |
1 |
ttgattaatattcggtacatataatataaattgtatgtacaagtgaccactataattagtatatgagtg |
69 |
Q |
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| T |
10741496 |
ttgattaatattcggtacatataatataact-gtatgtacaagtgaccattataattagtatatgagtg |
10741563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0040 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0040
Description:
Target: scaffold0040; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 342 - 382
Target Start/End: Complemental strand, 52573 - 52533
Alignment:
| Q |
342 |
gtgtgtgtttatttgagtatgtgttgaacactcggccaata |
382 |
Q |
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| T |
52573 |
gtgtgtgtctatttgagtatgtgttgaccactaggccaata |
52533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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