View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17303_low_46 (Length: 271)
Name: NF17303_low_46
Description: NF17303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17303_low_46 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 14 - 271
Target Start/End: Complemental strand, 33640227 - 33639969
Alignment:
| Q |
14 |
cttaggatcttagtctattttaaattcttttcctttttaagtcctataatggaatttcatgctatttctgtcatgtagagtattttatcagacgatttca |
113 |
Q |
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| T |
33640227 |
cttaggatcttagtgtattttaaattcttttcctttttaagtcctataatggaatttcatgttatttctgtcatgtagagtattttatcagaggatttca |
33640128 |
T |
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| Q |
114 |
attttaaaaaccttggtcgttacactttctcactaacaaaaccctaattccgtaatctcacctctctcggttctgtcagtttccacttcctctttcattt |
213 |
Q |
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| T |
33640127 |
attttaaaaaccttggtcgttacactttctcacaaacaaaaccctaattccgtaatctcacctctctcggttctgtcagtttccacttcctctttcattt |
33640028 |
T |
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| Q |
214 |
ctctccatgaaggaa-nnnnnnnnnacatttccccaacaaaatatgtagaggaatgttt |
271 |
Q |
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| T |
33640027 |
ctctccatgaaggaattttttttttacatttccccaacaaaatatgtagaggaatgttt |
33639969 |
T |
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