View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17303_low_5 (Length: 589)
Name: NF17303_low_5
Description: NF17303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17303_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 514; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 1 - 575
Target Start/End: Complemental strand, 2948181 - 2947607
Alignment:
| Q |
1 |
ccaggaacagcttataacaaatgtttgcaggtaagcattttattaatatgggtaatttagtaaacgaaactcgtttaattataaaaattagtacactcgt |
100 |
Q |
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| T |
2948181 |
ccaggaacagcttataacaaatgtttgcaggtaagcattttattaatatgggtaatttagtaaacgaaactcgtttaattataaaaattagtacactcgt |
2948082 |
T |
|
| Q |
101 |
gataactttaaacgacagttaatttgagacagagaaagtatcagacaaagtgtagtattttgattttgattgagaaaacagaaatattaatttgttttgg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |
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| T |
2948081 |
gataactttaaacgacagttaatttgagacagagaaagtatcagacaaagtgtagtatcttgattttgattgagaaaacagcaatattaatttgttttgg |
2947982 |
T |
|
| Q |
201 |
cttctcagggtagaaaaaaggcaatgaagatgcttaagaacatgctgcaggaaagaagggaaatgcccaggaaacaacagatggatttctttaactatgt |
300 |
Q |
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| T |
2947981 |
cttctcagggtagaaaaaaggcaatgaagatgcttaagaacatgctgcaggaaagaagggaaatgcctaggaaacaacagatggatttctttgactatgt |
2947882 |
T |
|
| Q |
301 |
tattgaagaacttagaaaagagggaacactcttaacagaagcaatagctctggacctcatgtttgtgcttctctttgcaagctttgaaaccacttctcag |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2947881 |
tattgaagaacttagaaaagagggaacactcttaacagaagcaatagctctggacctcatgtttgtgcttctctttgcaagctttgaaaccacttctcag |
2947782 |
T |
|
| Q |
401 |
gcccttacttatgccatcaaattactctctgacaatcccttggtgttcaagcaattacaagtacgttacaaatatatatttttnnnnnnnntcagaatct |
500 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
2947781 |
gcccttacttatgccatcaaattactctctgacaatcccttggtgttcaagcaattacaagtacgttacaaatatatatttttaaaaaaaatcagaatct |
2947682 |
T |
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| Q |
501 |
tttgaactannnnnnnattgctttacgacgtcgattttgacttcctcggtactttgtcttttaggaagaacatga |
575 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2947681 |
tttgaactatttttttattgctttacgacgtcgattttgacttcctcggtactttgtcttttaggaagaacatga |
2947607 |
T |
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