View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17303_low_59 (Length: 232)

Name: NF17303_low_59
Description: NF17303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17303_low_59
NF17303_low_59
[»] chr8 (20 HSPs)
chr8 (11-216)||(31369081-31369282)
chr8 (13-155)||(6801807-6801949)
chr8 (10-139)||(5528740-5528869)
chr8 (11-137)||(25638806-25638932)
chr8 (10-139)||(17634445-17634574)
chr8 (16-137)||(28249055-28249176)
chr8 (10-134)||(45356086-45356210)
chr8 (12-139)||(25637641-25637768)
chr8 (10-139)||(19369884-19370013)
chr8 (12-139)||(18766914-18767041)
chr8 (19-141)||(6403588-6403710)
chr8 (10-139)||(19448445-19448574)
chr8 (10-139)||(19532502-19532631)
chr8 (40-144)||(29553621-29553725)
chr8 (19-144)||(31347341-31347466)
chr8 (12-135)||(29345432-29345556)
chr8 (9-144)||(5650918-5651053)
chr8 (12-103)||(6223434-6223525)
chr8 (13-115)||(14997642-14997744)
chr8 (118-155)||(44719156-44719193)
[»] chr5 (18 HSPs)
chr5 (10-139)||(17037540-17037669)
chr5 (10-137)||(5079038-5079165)
chr5 (16-137)||(7410823-7410944)
chr5 (40-144)||(9354393-9354497)
chr5 (12-116)||(19985015-19985119)
chr5 (12-139)||(23679438-23679565)
chr5 (12-139)||(23855246-23855373)
chr5 (12-135)||(12042152-12042276)
chr5 (71-144)||(18191884-18191957)
chr5 (40-144)||(9333565-9333669)
chr5 (88-144)||(11833293-11833349)
chr5 (53-139)||(31068980-31069065)
chr5 (11-105)||(37233063-37233157)
chr5 (14-115)||(40401987-40402088)
chr5 (11-105)||(42076078-42076172)
chr5 (95-143)||(28080093-28080141)
chr5 (55-155)||(30786248-30786348)
chr5 (61-115)||(10869458-10869512)
[»] chr2 (11 HSPs)
chr2 (11-139)||(44920955-44921082)
chr2 (12-155)||(41573374-41573517)
chr2 (11-139)||(30267000-30267128)
chr2 (9-144)||(24479144-24479279)
chr2 (10-137)||(31342690-31342817)
chr2 (10-139)||(15513664-15513793)
chr2 (11-139)||(7718182-7718310)
chr2 (11-144)||(11017449-11017582)
chr2 (10-103)||(22966558-22966651)
chr2 (10-104)||(7702461-7702555)
chr2 (10-113)||(40016614-40016718)
[»] chr6 (23 HSPs)
chr6 (10-137)||(16734804-16734931)
chr6 (10-139)||(12591830-12591959)
chr6 (10-137)||(11936741-11936868)
chr6 (9-139)||(6684091-6684220)
chr6 (10-137)||(15361714-15361841)
chr6 (61-139)||(15690435-15690513)
chr6 (20-155)||(29667899-29668036)
chr6 (12-139)||(14669322-14669449)
chr6 (10-116)||(11948721-11948827)
chr6 (10-139)||(17719697-17719826)
chr6 (12-144)||(34374817-34374951)
chr6 (10-154)||(9631128-9631273)
chr6 (91-155)||(6673673-6673737)
chr6 (40-144)||(27969921-27970025)
chr6 (10-155)||(1942550-1942695)
chr6 (40-139)||(2941002-2941102)
chr6 (22-155)||(28736592-28736727)
chr6 (10-153)||(23904327-23904469)
chr6 (12-116)||(10070675-10070778)
chr6 (11-115)||(23264471-23264575)
chr6 (32-115)||(30481224-30481307)
chr6 (55-155)||(10935800-10935901)
chr6 (40-143)||(6346862-6346965)
[»] chr3 (16 HSPs)
chr3 (12-155)||(9633418-9633561)
chr3 (34-155)||(5498459-5498580)
chr3 (12-139)||(1627923-1628050)
chr3 (10-137)||(1654575-1654702)
chr3 (16-134)||(2550168-2550286)
chr3 (10-139)||(13845989-13846118)
chr3 (14-135)||(26707860-26707981)
chr3 (11-137)||(7407729-7407855)
chr3 (19-132)||(16457314-16457427)
chr3 (10-113)||(2943188-2943291)
chr3 (12-144)||(27713415-27713544)
chr3 (12-115)||(36035310-36035413)
chr3 (31-141)||(1613208-1613318)
chr3 (67-155)||(27259476-27259564)
chr3 (12-65)||(28745046-28745099)
chr3 (12-69)||(36035531-36035588)
[»] chr7 (14 HSPs)
chr7 (10-139)||(10022121-10022250)
chr7 (9-139)||(9242457-9242587)
chr7 (12-157)||(30089714-30089859)
chr7 (10-136)||(20277334-20277460)
chr7 (9-155)||(26608512-26608658)
chr7 (10-137)||(4685377-4685504)
chr7 (10-136)||(26621065-26621191)
chr7 (19-139)||(26224961-26225081)
chr7 (16-139)||(26205395-26205518)
chr7 (12-113)||(16086510-16086611)
chr7 (12-115)||(26619080-26619182)
chr7 (55-139)||(16170268-16170352)
chr7 (73-141)||(3234322-3234390)
chr7 (95-155)||(29932407-29932467)
[»] chr4 (11 HSPs)
chr4 (11-144)||(24558970-24559103)
chr4 (11-139)||(47066009-47066137)
chr4 (10-134)||(43600269-43600393)
chr4 (11-139)||(53300348-53300476)
chr4 (10-139)||(1684926-1685055)
chr4 (10-139)||(1152041-1152170)
chr4 (11-116)||(21539247-21539351)
chr4 (21-115)||(4904125-4904219)
chr4 (9-135)||(37750963-37751088)
chr4 (10-65)||(27739749-27739804)
chr4 (11-49)||(48465460-48465498)
[»] chr1 (13 HSPs)
chr1 (10-139)||(51758750-51758879)
chr1 (12-155)||(12189933-12190076)
chr1 (8-155)||(28636884-28637031)
chr1 (11-126)||(39368614-39368730)
chr1 (34-139)||(16222775-16222880)
chr1 (18-116)||(3399642-3399740)
chr1 (14-136)||(18308148-18308270)
chr1 (62-139)||(15214324-15214401)
chr1 (19-155)||(897436-897571)
chr1 (67-139)||(37097371-37097443)
chr1 (53-136)||(5911681-5911764)
chr1 (10-105)||(1843983-1844078)
chr1 (82-139)||(15193916-15193973)
[»] scaffold0576 (1 HSPs)
scaffold0576 (10-137)||(6698-6825)
[»] scaffold0684 (1 HSPs)
scaffold0684 (9-139)||(720-850)
[»] scaffold0069 (1 HSPs)
scaffold0069 (10-127)||(40672-40789)


Alignment Details
Target: chr8 (Bit Score: 169; Significance: 9e-91; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 11 - 216
Target Start/End: Original strand, 31369081 - 31369282
Alignment:
Q  11 gataatactataaaatgtaactgaaactctttagtaacataagctttacataacatttgtttaaatgtcactaaacttaattagtaacatttttcgtgat 110  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  31369081 gataatcctataaaatgtaactgaaactctttagtaacataagctttacataacatttgtttaaatgtcactaaacttaattagtaacatttatcgtgat 31369180  T
Q  111 ttagtttcatttttcaaatgttactaaatctcaactttgttgtagcgaaataaatcagtccaacaacatctagaagcatgcaagtaaggaggcttgagcc 210  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||    |||||||||||||||||||||    
T  31369181 ttagtttcatttttcaaatgttattaaatctcaactttgttgtagcgaagtaaataagtccaacaacatctagaa----gcaagtaaggaggcttgagcc 31369276  T
Q  211 caattt 216  Q
    ||||||    
T  31369277 caattt 31369282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 13 - 155
Target Start/End: Original strand, 6801807 - 6801949
Alignment:
Q  13 taatactataaaatgtaactgaaactctttagtaacataagctttacataacatttgtttaaatgtcactaaacttaattagtaacatttttcgtgattt 112  Q
    ||||||| |||||||||||| ||||||||||||||||   ||||||| ||||| ||||| || ||| |||||| ||||||||||||||||||  ||||||    
T  6801807 taatactctaaaatgtaactaaaactctttagtaacaggggctttacctaacaattgttcaactgttactaaatttaattagtaacatttttattgattt 6801906  T
Q  113 agtttcatttttcaaatgttactaaatctcaactttgttgtag 155  Q
    |||   | ||||||| ||||||||||||||| || ||||||||    
T  6801907 agtaatagttttcaagtgttactaaatctcatctatgttgtag 6801949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 10 - 139
Target Start/End: Complemental strand, 5528869 - 5528740
Alignment:
Q  10 agataatactataaaatgtaactgaaactctttagtaacataagctttacataacatttgtttaaatgtcactaaacttaattagtaacatttttcgtga 109  Q
    |||||||||| |||||||||||| |||||||||||||||| |  |||||  ||||| |||||| | |||  ||||| ||||||||||||||||||| |||    
T  5528869 agataatactgtaaaatgtaactaaaactctttagtaacacagactttatctaacaattgtttgagtgttgctaaatttaattagtaacatttttcttga 5528770  T
Q  110 tttagtttcatttttcaaatgttactaaat 139  Q
    ||||||| || ||||||| |||||||||||    
T  5528769 tttagttacaattttcaagtgttactaaat 5528740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 11 - 137
Target Start/End: Complemental strand, 25638932 - 25638806
Alignment:
Q  11 gataatactataaaatgtaactgaaactctttagtaacataagctttacataacatttgtttaaatgtcactaaacttaattagtaacatttttcgtgat 110  Q
    |||| ||||||||||||||||| |||| ||||||||||||  | ||||| ||||| ||||| || |||  ||||| ||||||||||||||||||| ||||    
T  25638932 gatagtactataaaatgtaactaaaacactttagtaacatgggttttacctaacaattgttcaagtgttgctaaatttaattagtaacatttttcttgat 25638833  T
Q  111 ttagtttcatttttcaaatgttactaa 137  Q
    |||||| || ||||||| |||||||||    
T  25638832 ttagttacaattttcaagtgttactaa 25638806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 10 - 139
Target Start/End: Original strand, 17634445 - 17634574
Alignment:
Q  10 agataatactataaaatgtaactgaaactctttagtaacataagctttacataacatttgtttaaatgtcactaaacttaattagtaacatttttcgtga 109  Q
    ||||| ||||||||||||||||| ||  ||||||||||||   ||||||| || || ||||| || ||| | |||| ||||||||||||||||||| |||    
T  17634445 agatagtactataaaatgtaactaaatttctttagtaacacgggctttacctatcaattgttcaagtgttattaaatttaattagtaacatttttcttga 17634544  T
Q  110 tttagtttcatttttcaaatgttactaaat 139  Q
    ||||||| || |||||||||||||||||||    
T  17634545 tttagttacaattttcaaatgttactaaat 17634574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 137
Target Start/End: Original strand, 28249055 - 28249176
Alignment:
Q  16 tactataaaatgtaactgaaactctttagtaacataagctttacataacatttgtttaaatgtcactaaacttaattagtaacatttttcgtgatttagt 115  Q
    ||||||||||||||||| |||| |||||||||||   ||||||| ||||| ||||| || |||  ||||| ||||||||||||||||||| |||||||||    
T  28249055 tactataaaatgtaactaaaacactttagtaacacgggctttacctaacaattgttcaagtgttgctaaatttaattagtaacatttttcttgatttagt 28249154  T
Q  116 ttcatttttcaaatgttactaa 137  Q
    | || ||||||| |||||||||    
T  28249155 tacaattttcaagtgttactaa 28249176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 10 - 134
Target Start/End: Original strand, 45356086 - 45356210
Alignment:
Q  10 agataatactataaaatgtaactgaaactctttagtaacataagctttacataacatttgtttaaatgtcactaaacttaattagtaacatttttcgtga 109  Q
    ||||| ||||||||||||||||| |||| |||||||||||   ||||||| ||||| ||||| || |||  ||||| ||||||||||||||||||| |||    
T  45356086 agatagtactataaaatgtaactaaaacactttagtaacacgggctttacctaacaattgttcaagtgttgctaaatttaattagtaacatttttcttga 45356185  T
Q  110 tttagtttcatttttcaaatgttac 134  Q
    ||||||| || ||||||| ||||||    
T  45356186 tttagttacaattttcaagtgttac 45356210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 12 - 139
Target Start/End: Complemental strand, 25637768 - 25637641
Alignment:
Q  12 ataatactataaaatgtaactgaaactctttagtaacataagctttacataacatttgtttaaatgtcactaaacttaattagtaacatttttcgtgatt 111  Q
    ||||||||||||||||||||| ||| ||||||||||||   ||||||| ||||| |||||  | |||  ||||| ||||||||||||| ||||| | |||    
T  25637768 ataatactataaaatgtaactaaaattctttagtaacacgggctttacctaacaattgttcgagtgttgctaaatttaattagtaacagttttcttaatt 25637669  T
Q  112 tagtttcatttttcaaatgttactaaat 139  Q
    ||||| || ||||||| |||||||||||    
T  25637668 tagttacaattttcaagtgttactaaat 25637641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 10 - 139
Target Start/End: Original strand, 19369884 - 19370013
Alignment:
Q  10 agataatactataaaatgtaactgaaactctttagtaacataagctttacataacatttgtttaaatgtcactaaacttaattagtaacatttttcgtga 109  Q
    ||||||||||||||||||||||| ||||||||||||||||    |||||  ||||| |||||  | |||  | ||| ||||||||||||||||||| |||    
T  19369884 agataatactataaaatgtaactaaaactctttagtaacacggactttatctaacaattgttcgagtgttgcaaaatttaattagtaacatttttcttga 19369983  T
Q  110 tttagtttcatttttcaaatgttactaaat 139  Q
    ||||||| || ||||||| |||| ||||||    
T  19369984 tttagttacaattttcaagtgttgctaaat 19370013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 12 - 139
Target Start/End: Complemental strand, 18767041 - 18766914
Alignment:
Q  12 ataatactataaaatgtaactgaaactctttagtaacataagctttacataacatttgtttaaatgtcactaaacttaattagtaacatttttcgtgatt 111  Q
    ||||||||||||||||||||| ||||||||||||||||    |||||| ||||| |||||| | |||  | ||| ||||||| ||| ||||||| |||||    
T  18767041 ataatactataaaatgtaactaaaactctttagtaacacgtactttacctaacaattgtttgagtgttgcaaaatttaattaataatatttttcttgatt 18766942  T
Q  112 tagtttcatttttcaaatgttactaaat 139  Q
    ||||| || ||||||| |||| ||||||    
T  18766941 tagttacaattttcaagtgttgctaaat 18766914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 19 - 141
Target Start/End: Complemental strand, 6403710 - 6403588
Alignment:
Q  19 tataaaatgtaactgaaactctttagtaacataagctttacataacatttgtttaaatgtcactaaacttaattagtaacatttttcgtgatttagtttc 118  Q
    |||||||||| |||||| || |||| |||||   ||||||| ||||| ||| | |||||| |||||| ||||||||||||||||||| | |||||||| |    
T  6403710 tataaaatgttactgaagctttttaataacacgggctttacctaacaattgctcaaatgttactaaatttaattagtaacatttttcttaatttagttac 6403611  T
Q  119 atttttcaaatgttactaaatct 141  Q
    |  |||||| |||||||||||||    
T  6403610 aaatttcaattgttactaaatct 6403588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 10 - 139
Target Start/End: Complemental strand, 19448574 - 19448445
Alignment:
Q  10 agataatactataaaatgtaactgaaactctttagtaacataagctttacataacatttgtttaaatgtcactaaacttaattagtaacatttttcgtga 109  Q
    ||||||||||||||||| ||||| ||||||||||||||||    |||||  ||||| |||||  | |||  | ||| ||||||||||||||||||| |||    
T  19448574 agataatactataaaatataactaaaactctttagtaacacggactttatctaacaattgttcgagtgttgcaaaatttaattagtaacatttttcttga 19448475  T
Q  110 tttagtttcatttttcaaatgttactaaat 139  Q
    ||||||| || ||||||| |||| ||||||    
T  19448474 tttagttacaattttcaagtgttgctaaat 19448445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 10 - 139
Target Start/End: Original strand, 19532502 - 19532631
Alignment:
Q  10 agataatactataaaatgtaactgaaactctttagtaacataagctttacataacatttgtttaaatgtcactaaacttaattagtaacatttttcgtga 109  Q
    ||||||||||||||||| ||||| ||||||||||||||||    |||||  ||||| |||||  | |||  | ||| ||||||||||||||||||| |||    
T  19532502 agataatactataaaatataactaaaactctttagtaacacggactttatctaacaattgttcgagtgttgcaaaatttaattagtaacatttttcttga 19532601  T
Q  110 tttagtttcatttttcaaatgttactaaat 139  Q
    ||||||| || ||||||| |||| ||||||    
T  19532602 tttagttacaattttcaagtgttgctaaat 19532631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 40 - 144
Target Start/End: Complemental strand, 29553725 - 29553621
Alignment:
Q  40 tttagtaacataagctttacataacatttgtttaaatgtcactaaacttaattagtaacatttttcgtgatttagtttcatttttcaaatgttactaaat 139  Q
    ||||||||||   ||||||  ||||| ||| | ||||||  ||||| ||||||||||||||||||| |||||| ||| || ||||||| |||||||||||    
T  29553725 tttagtaacacgcgctttaactaacaattgctcaaatgttgctaaatttaattagtaacatttttcttgatttggttacaattttcaattgttactaaat 29553626  T
Q  140 ctcaa 144  Q
    |||||    
T  29553625 ctcaa 29553621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 144
Target Start/End: Complemental strand, 31347466 - 31347341
Alignment:
Q  19 tataaaatgtaactgaaactctttagtaacataagctttacataacatttgtttaaatgtcactaaacttaattagtaacatttttcgtgatttagtttc 118  Q
    |||||||||| ||||||  |  ||||||||| | | ||||  ||||| ||| | |||||| |||||| |||||||||| |||||||| |||||| ||| |    
T  31347466 tataaaatgttactgaagatggttagtaacacaggatttatctaacaattgatcaaatgttactaaatttaattagtagcatttttcttgatttggttac 31347367  T
Q  119 atttttcaaatgttactaaatctcaa 144  Q
    | ||||||| ||||||||||| ||||    
T  31347366 aattttcaattgttactaaatttcaa 31347341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 135
Target Start/End: Complemental strand, 29345556 - 29345432
Alignment:
Q  12 ataatactataaaatgtaactgaaactc-tttagtaacataagctttacataacatttgtttaaatgtcactaaacttaattagtaacatttttcgtgat 110  Q
    ||||||||||||||||||||| ||  |  |||||||| |   ||||||| ||||| ||||| ||| || |||||| ||||||||||| ||||||| ||||    
T  29345556 ataatactataaaatgtaactaaagtttgtttagtaagaggggctttacctaacaattgttcaaaggttactaaatttaattagtaatatttttcttgat 29345457  T
Q  111 ttagtttcatttttcaaatgttact 135  Q
    |||||| || ||||| | |||||||    
T  29345456 ttagttacaattttcgagtgttact 29345432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 144
Target Start/End: Original strand, 5650918 - 5651053
Alignment:
Q  9 tagataatactataaaatgtaactgaaactctttagtaacataagctttacataacatttgtttaaatgtcactaaacttaattagtaacatttttcgtg 108  Q
    |||||||||| |||||||| |||| || || ||| ||||||   | ||||| ||||| ||||| ||||||  ||||| | ||||||||||||||||| ||    
T  5650918 tagataataccataaaatgcaactaaagcttttttgtaacaagggttttacctaacaattgttcaaatgttgctaaattgaattagtaacatttttcttg 5651017  T
Q  109 atttagtttcatttttcaaatgttactaaatctcaa 144  Q
    |||||||   | ||||||| ||||||| || |||||    
T  5651018 atttagtaatagttttcaagtgttactgaaactcaa 5651053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 103
Target Start/End: Complemental strand, 6223525 - 6223434
Alignment:
Q  12 ataatactataaaatgtaactgaaactctttagtaacataagctttacataacatttgtttaaatgtcactaaacttaattagtaacatttt 103  Q
    |||||| |||||| ||||||| ||||||||||||||||   ||||||| ||||| || |  |||||| |||||| ||||| |||||| ||||    
T  6223525 ataatattataaagtgtaactaaaactctttagtaacacgcgctttacctaacaattttacaaatgttactaaatttaatcagtaacgtttt 6223434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 115
Target Start/End: Complemental strand, 14997744 - 14997642
Alignment:
Q  13 taatactataaaatgtaactgaaactctttagtaacataagctttacataacatttgtttaaatgtcactaaacttaattagtaacatttttcgtgattt 112  Q
    ||||||||||||| |||||| || ||||||||||||||  | ||||| ||||| || |  |||||| |||||  ||||  ||||||||||||| ||| ||    
T  14997744 taatactataaaaggtaactaaagctctttagtaacatgggttttacctaacaattctacaaatgttactaattttaaccagtaacatttttcttgaatt 14997645  T
Q  113 agt 115  Q
    |||    
T  14997644 agt 14997642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 155
Target Start/End: Original strand, 44719156 - 44719193
Alignment:
Q  118 catttttcaaatgttactaaatctcaactttgttgtag 155  Q
    ||||||||||||||||||||||||||| | ||||||||    
T  44719156 catttttcaaatgttactaaatctcaagtatgttgtag 44719193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 10 - 139
Target Start/End: Complemental strand, 17037669 - 17037540
Alignment:
Q  10 agataatactataaaatgtaactgaaactctttagtaacataagctttacataacatttgtttaaatgtcactaaacttaattagtaacatttttcgtga 109  Q
    ||||||||||||||||||||||| ||||||||||||||||    |||||| ||||| ||||| |||||| |||||| ||||||||||||||||||| |||    
T  17037669 agataatactataaaatgtaactaaaactctttagtaacactgactttacctaacaattgttcaaatgttactaaatttaattagtaacatttttcttga 17037570  T
Q  110 tttagtttcatttttcaaatgttactaaat 139  Q
    ||||||| |  ||||||| |||||||||||    
T  17037569 tttagttacgattttcaagtgttactaaat 17037540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 10 - 137
Target Start/End: Original strand, 5079038 - 5079165
Alignment:
Q  10 agataatactataaaatgtaactgaaactctttagtaacataagctttacataacatttgtttaaatgtcactaaacttaattagtaacatttttcgtga 109  Q
    ||||| ||||||||||||||||| |||| |||||||||||   ||||||| ||||| ||||| || |||  ||||| ||||||||||||||||||| |||    
T  5079038 agatagtactataaaatgtaactaaaacactttagtaacacgggctttacctaacaattgttcaagtgttgctaaatttaattagtaacatttttcttga 5079137  T
Q  110 tttagtttcatttttcaaatgttactaa 137  Q
    ||||||| || ||||||| |||||||||    
T  5079138 tttagttacaattttcaagtgttactaa 5079165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 137
Target Start/End: Complemental strand, 7410944 - 7410823
Alignment:
Q  16 tactataaaatgtaactgaaactctttagtaacataagctttacataacatttgtttaaatgtcactaaacttaattagtaacatttttcgtgatttagt 115  Q
    ||||||||||||||||| |||| |||||||||||   ||||||| ||||| ||||| || |||  ||||| ||||||||||||||||||  |||||||||    
T  7410944 tactataaaatgtaactaaaacactttagtaacacgggctttacctaacaattgttcaagtgttgctaaatttaattagtaacattttttttgatttagt 7410845  T
Q  116 ttcatttttcaaatgttactaa 137  Q
    | || |||| ||||||||||||    
T  7410844 tacaattttgaaatgttactaa 7410823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 40 - 144
Target Start/End: Original strand, 9354393 - 9354497
Alignment:
Q  40 tttagtaacataagctttacataacatttgtttaaatgtcactaaacttaattagtaacatttttcgtgatttagtttcatttttcaaatgttactaaat 139  Q
    |||||||||||  ||||||| ||||| ||| | |||||| | |||| ||||||||||||||||||| ||||| |||| || ||||||| |||||||||||    
T  9354393 tttagtaacatgggctttacctaacaattgctcaaatgttattaaatttaattagtaacatttttcttgattcagttacaattttcaattgttactaaat 9354492  T
Q  140 ctcaa 144  Q
    |||||    
T  9354493 ctcaa 9354497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 12 - 116
Target Start/End: Complemental strand, 19985119 - 19985015
Alignment:
Q  12 ataatactataaaatgtaactgaaactctttagtaacataagctttacataacatttgtttaaatgtcactaaacttaattagtaacatttttcgtgatt 111  Q
    ||||||||||||||||||||| ||||||||||||||| |   |||||| ||||| || || |||||| ||||||  |||||||||||||||| | |||||    
T  19985119 ataatactataaaatgtaactaaaactctttagtaacctggactttacctaacaattattcaaatgttactaaatctaattagtaacattttccttgatt 19985020  T
Q  112 tagtt 116  Q
    |||||    
T  19985019 tagtt 19985015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 12 - 139
Target Start/End: Complemental strand, 23679565 - 23679438
Alignment:
Q  12 ataatactataaaatgtaactgaaactctttagtaacataagctttacataacatttgtttaaatgtcactaaacttaattagtaacatttttcgtgatt 111  Q
    ||||||||||||||||||||| ||||||||||||||||  | |||||  ||| | |||||  |||||  | ||| ||||||| ||||||||||| |||||    
T  23679565 ataatactataaaatgtaactaaaactctttagtaacacgaactttatctaataattgttcgaatgttgcaaaatttaattaataacatttttcttgatt 23679466  T
Q  112 tagtttcatttttcaaatgttactaaat 139  Q
    ||||| || ||||||| |||| ||||||    
T  23679465 tagttacaattttcaagtgttgctaaat 23679438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 12 - 139
Target Start/End: Original strand, 23855246 - 23855373
Alignment:
Q  12 ataatactataaaatgtaactgaaactctttagtaacataagctttacataacatttgtttaaatgtcactaaacttaattagtaacatttttcgtgatt 111  Q
    ||||||||||||||||||||| ||||||||||||||||  | |||||  ||| | |||||  |||||  | ||| ||||||| ||||||||||| |||||    
T  23855246 ataatactataaaatgtaactaaaactctttagtaacacgaactttatctaataattgttcgaatgttgcaaaatttaattaataacatttttcttgatt 23855345  T
Q  112 tagtttcatttttcaaatgttactaaat 139  Q
    ||||| || ||||||| |||| ||||||    
T  23855346 tagttacaattttcaagtgttgctaaat 23855373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 12 - 135
Target Start/End: Original strand, 12042152 - 12042276
Alignment:
Q  12 ataatactataaaatgtaactgaaactctttagtaacataag---ctttacataacatttgtttaaatgtcactaaacttaattagtaacatttttcgtg 108  Q
    |||||| |||||||||||||| ||||||||||||||  || |   |||||| ||||| ||||| |||||| |||||| | ||| ||||||||||||| ||    
T  12042152 ataataatataaaatgtaactaaaactctttagtaa--taggtttctttacctaacaattgttcaaatgttactaaattgaatcagtaacatttttcttg 12042249  T
Q  109 atttagtttcatttttcaaatgttact 135  Q
    |||||||| || ||||||||| |||||    
T  12042250 atttagttacaattttcaaatattact 12042276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 71 - 144
Target Start/End: Original strand, 18191884 - 18191957
Alignment:
Q  71 ttaaatgtcactaaacttaattagtaacatttttcgtgatttagtttcatttttcaaatgttactaaatctcaa 144  Q
    |||||||| |||||| ||||||||||||||||||| | |||||||| || ||||||| ||||||||||||||||    
T  18191884 ttaaatgttactaaatttaattagtaacatttttcttaatttagttacaattttcaattgttactaaatctcaa 18191957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 40 - 144
Target Start/End: Original strand, 9333565 - 9333669
Alignment:
Q  40 tttagtaacataagctttacataacatttgtttaaatgtcactaaacttaattagtaacatttttcgtgatttagtttcatttttcaaatgttactaaat 139  Q
    |||||||||||   |||||| ||||| ||| | |||||| |||||| ||||||||||||||||||| |||||| ||| || ||||||| |||||| ||||    
T  9333565 tttagtaacatcgactttacctaacaattgctcaaatgttactaaatttaattagtaacatttttcttgattttgttacaattttcaattgttacaaaat 9333664  T
Q  140 ctcaa 144  Q
    |||||    
T  9333665 ctcaa 9333669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 88 - 144
Target Start/End: Original strand, 11833293 - 11833349
Alignment:
Q  88 taattagtaacatttttcgtgatttagtttcatttttcaaatgttactaaatctcaa 144  Q
    |||||| ||||||||||| |||||||||| ||||| |||||||||||||||||||||    
T  11833293 taattaataacatttttcatgatttagttacatttgtcaaatgttactaaatctcaa 11833349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 53 - 139
Target Start/End: Original strand, 31068980 - 31069065
Alignment:
Q  53 gctttacataacatttgtttaaatgtcactaaacttaattagtaacatttttcgtgatttagtttcatttttcaaatgttactaaat 139  Q
    ||||||| ||||| ||||| || ||| |||||| ||||||||||||||||||| |||||||||| || |||| || |||||||||||    
T  31068980 gctttacctaacaattgttcaa-tgttactaaatttaattagtaacatttttcttgatttagttacaatttttaagtgttactaaat 31069065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 105
Target Start/End: Complemental strand, 37233157 - 37233063
Alignment:
Q  11 gataatactataaaatgtaactgaaactctttagtaacataagctttacataacatttgtttaaatgtcactaaacttaattagtaacatttttc 105  Q
    |||||||||||||||||| ||||||||| ||||||||||    || ||| ||||| ||| | |||||| |||||| |||||||||||| ||||||    
T  37233157 gataatactataaaatgttactgaaactttttagtaacacggactatacctaacaattgctcaaatgttactaaatttaattagtaacttttttc 37233063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 115
Target Start/End: Original strand, 40401987 - 40402088
Alignment:
Q  14 aatactataaaatgtaactgaaactctttagtaacataagctttacataacatttgtttaaatgtcactaaacttaattagtaacatttttcgtgattta 113  Q
    |||||||||||||||  ||||| || ||||| |||| |  |||||| ||||| ||||| ||| || |||||| ||||||||||||||||||| | |||||    
T  40401987 aatactataaaatgttgctgaagctttttagcaacacagactttacctaacaattgttcaaacgtaactaaatttaattagtaacatttttctttattta 40402086  T
Q  114 gt 115  Q
    ||    
T  40402087 gt 40402088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 11 - 105
Target Start/End: Complemental strand, 42076172 - 42076078
Alignment:
Q  11 gataatactataaaatgtaactgaaactctttagtaacataagctttacataacatttgtttaaatgtcactaaacttaattagtaacatttttc 105  Q
    |||||||||||||||| |  ||||| || |||||||||||   |||||  ||||| ||||| |||||| |||||| ||||||||||||| |||||    
T  42076172 gataatactataaaatattcctgaagctttttagtaacatggactttatctaacaattgttcaaatgttactaaatttaattagtaacaattttc 42076078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 143
Target Start/End: Complemental strand, 28080141 - 28080093
Alignment:
Q  95 taacatttttcgtgatttagtttcatttttcaaatgttactaaatctca 143  Q
    ||||||||||| ||||||| || ||||||| ||||||||||||||||||    
T  28080141 taacatttttcttgatttaattacattttttaaatgttactaaatctca 28080093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 155
Target Start/End: Complemental strand, 30786348 - 30786248
Alignment:
Q  55 tttacataacatttgtttaaatgtcactaaacttaattagtaacatttttcgtgatttagtttcatttttcaaatgttactaaatctcaactttgttgta 154  Q
    ||||| ||||| || || |||||| |||||| | ||| ||||||||||||| ||||| |||| || ||||||| |||||||| |||| || | |||||||    
T  30786348 tttacctaacaattattcaaatgttactaaattgaatcagtaacatttttcttgattaagttacaattttcaagtgttactagatcttaattatgttgta 30786249  T
Q  155 g 155  Q
    |    
T  30786248 g 30786248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 115
Target Start/End: Complemental strand, 10869512 - 10869458
Alignment:
Q  61 taacatttgtttaaatgtcactaaacttaattagtaacatttttcgtgatttagt 115  Q
    ||||| ||||| |||||| |||||| ||||||||||||| ||||| |||||||||    
T  10869512 taacaattgttcaaatgttactaaatttaattagtaacaattttcatgatttagt 10869458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 11 - 139
Target Start/End: Complemental strand, 44921082 - 44920955
Alignment:
Q  11 gataatactataaaatgtaactgaaactctttagtaacataagctttacataacatttgtttaaatgtcactaaacttaattagtaacatttttcgtgat 110  Q
    |||| ||||||||||||||||| ||||||||||||||||  |||||||| ||||| |||||||  ||| |||||| ||||||||||||||||||  ||||    
T  44921082 gatagtactataaaatgtaactaaaactctttagtaacacgagctttacctaacaattgtttaggtgttactaaatttaattagtaacattttt-ttgat 44920984  T
Q  111 ttagtttcatttttcaaatgttactaaat 139  Q
    |||||| || ||||||| |||||||||||    
T  44920983 ttagttacaattttcaagtgttactaaat 44920955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 12 - 155
Target Start/End: Complemental strand, 41573517 - 41573374
Alignment:
Q  12 ataatactataaaatgtaactgaaactctttagtaacataagctttacataacatttgtttaaatgtcactaaacttaattagtaacatttttcgtgatt 111  Q
    ||||||||||||||||| | ||||    ||||||||||   | ||||| ||||| |||||||| ||| |||||| ||||||||||||||||||| |||||    
T  41573517 ataatactataaaatgttattgaagtaatttagtaacacggggtttacctaacaattgtttaactgttactaaatttaattagtaacatttttcttgatt 41573418  T
Q  112 tagtttcatttttcaaatgttactaaatctcaactttgttgtag 155  Q
    ||||| |||||||  |||||||||||||||||| ||||||||||    
T  41573417 tagttacattttttgaatgttactaaatctcaattttgttgtag 41573374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 11 - 139
Target Start/End: Complemental strand, 30267128 - 30267000
Alignment:
Q  11 gataatactataaaatgtaactgaaactctttagtaacataagctttacataacatttgtttaaatgtcactaaacttaattagtaacatttttcgtgat 110  Q
    |||| ||||||||||||||||| ||||||||| ||||||   ||||||| ||||| ||||| |  ||| |||||| ||||||| ||||||||||| ||||    
T  30267128 gatagtactataaaatgtaactaaaactctttggtaacacgggctttacctaacaattgttcaggtgttactaaatttaattactaacatttttcttgat 30267029  T
Q  111 ttagtttcatttttcaaatgttactaaat 139  Q
    |||||| || ||||||| |||||||||||    
T  30267028 ttagttacaattttcaagtgttactaaat 30267000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 9 - 144
Target Start/End: Complemental strand, 24479279 - 24479144
Alignment:
Q  9 tagataatactataaaatgtaactgaaactctttagtaacataagctttacataacatttgtttaaatgtcactaaacttaattagtaacatttttcgtg 108  Q
    |||||||||||||||||| ||||| || |||||||||||||  |||||||| ||| | ||||| |||||| |||||| ||||||||||||| || || ||    
T  24479279 tagataatactataaaatataactaaagctctttagtaacacgagctttacctaagaattgttcaaatgttactaaatttaattagtaacagttatcttg 24479180  T
Q  109 atttagtttcatttttcaaatgttactaaatctcaa 144  Q
    |||||||   | ||||||| |||||||| |||||||    
T  24479179 atttagtaataattttcaagtgttactatatctcaa 24479144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 10 - 137
Target Start/End: Original strand, 31342690 - 31342817
Alignment:
Q  10 agataatactataaaatgtaactgaaactctttagtaacataagctttacataacatttgtttaaatgtcactaaacttaattagtaacatttttcgtga 109  Q
    ||||| ||||||||||||||||| |||| |||||||||||   ||||||  ||||| ||||| || |||  ||||| ||||||||||||||||||| |||    
T  31342690 agatagtactataaaatgtaactaaaacactttagtaacacgggctttatctaacaattgttcaagtgttgctaaatttaattagtaacatttttcttga 31342789  T
Q  110 tttagtttcatttttcaaatgttactaa 137  Q
    ||||||| || ||||||| |||||||||    
T  31342790 tttagttacaattttcaagtgttactaa 31342817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 10 - 139
Target Start/End: Complemental strand, 15513793 - 15513664
Alignment:
Q  10 agataatactataaaatgtaactgaaactctttagtaacataagctttacataacatttgtttaaatgtcactaaacttaattagtaacatttttcgtga 109  Q
    ||||| ||||||||||||||||| || || ||||||||||  |||||||| ||||| ||||| || ||| || ||| |||| |||||||||||||| |||    
T  15513793 agatagtactataaaatgtaactaaatctttttagtaacacgagctttacctaacaattgttcaagtgttacaaaatttaactagtaacatttttcttga 15513694  T
Q  110 tttagtttcatttttcaaatgttactaaat 139  Q
    |||| || || |||| || |||||||||||    
T  15513693 tttacttacaatttttaattgttactaaat 15513664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 11 - 139
Target Start/End: Complemental strand, 7718310 - 7718182
Alignment:
Q  11 gataatactataaaatgtaactgaaactctttagtaacataagctttacataacatttgtttaaatgtcactaaacttaattagtaacatttttcgtgat 110  Q
    |||| ||||||||||||||| | ||||||||||||||||    |||||  ||||| ||||| |  ||| |||||| ||||||||||| ||||||| ||||    
T  7718310 gatagtactataaaatgtaattaaaactctttagtaacacggactttatctaacaattgttcatgtgttactaaatttaattagtaatatttttcttgat 7718211  T
Q  111 ttagtttcatttttcaaatgttactaaat 139  Q
    |||||| || ||||||| | |||||||||    
T  7718210 ttagttacaattttcaagtattactaaat 7718182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 11 - 144
Target Start/End: Complemental strand, 11017582 - 11017449
Alignment:
Q  11 gataatactataaaatgtaactgaaactctttagtaacataagctttacataacatttgtttaaatgtcactaaacttaattagtaacatttttcgtgat 110  Q
    |||||||||||||| ||| |||||| || ||||||||||    |||||| ||||| ||| | |||||| |||||| ||||||||||||| ||||| | ||    
T  11017582 gataatactataaagtgttactgaagctttttagtaacacggactttacctaacaattggtcaaatgttactaaatttaattagtaacaattttctttat 11017483  T
Q  111 ttagtttcatttttcaaatgttactaaatctcaa 144  Q
    |||||  |  ||||||| |||||||| |||||||    
T  11017482 ttagtaacggttttcaattgttactagatctcaa 11017449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 10 - 103
Target Start/End: Complemental strand, 22966651 - 22966558
Alignment:
Q  10 agataatactataaaatgtaactgaaactctttagtaacataagctttacataacatttgtttaaatgtcactaaacttaattagtaacatttt 103  Q
    |||||||||| |||||||||||| ||  ||||||||||||   ||||||| ||||| |||||||||||| |||||| || |||||||| |||||    
T  22966651 agataatactctaaaatgtaactaaaggtctttagtaacaggggctttacctaacaattgtttaaatgtaactaaatttcattagtaatatttt 22966558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 10 - 104
Target Start/End: Complemental strand, 7702555 - 7702461
Alignment:
Q  10 agataatactataaaatgtaactgaaactctttagtaacataagctttacataacatttgtttaaatgtcactaaacttaattagtaacattttt 104  Q
    ||||||||||| ||||||||||| || ||||||||||| ||  ||||||| ||||| ||||  |||||| |||||  ||||||| ||||||||||    
T  7702555 agataatactacaaaatgtaactaaagctctttagtaatatgggctttacctaacaattgtacaaatgttactaattttaattaataacattttt 7702461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 113
Target Start/End: Complemental strand, 40016718 - 40016614
Alignment:
Q  10 agataatactataaaatgtaactgaaa-ctctttagtaacataagctttacataacatttgtttaaatgtcactaaacttaattagtaacatttttcgtg 108  Q
    ||||||||| ||||||||||| | ||| ||||||||||| |    |||||| ||||| || || |||||| |||||| ||||| ||||||||||| | ||    
T  40016718 agataatacaataaaatgtaattaaaatctctttagtaatagggtctttacctaacaattattcaaatgttactaaatttaatcagtaacattttacttg 40016619  T
Q  109 attta 113  Q
    |||||    
T  40016618 attta 40016614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 4e-28; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 10 - 137
Target Start/End: Complemental strand, 16734931 - 16734804
Alignment:
Q  10 agataatactataaaatgtaactgaaactctttagtaacataagctttacataacatttgtttaaatgtcactaaacttaattagtaacatttttcgtga 109  Q
    ||||| ||||||||||||||||| |||| |||||||||||   ||||||| ||||| ||||| ||||||  ||||| ||||||||||||||||||| |||    
T  16734931 agatagtactataaaatgtaactaaaacactttagtaacacgggctttacctaacaattgttcaaatgttgctaaatttaattagtaacatttttcttga 16734832  T
Q  110 tttagtttcatttttcaaatgttactaa 137  Q
    ||||||| || ||||||| |||||||||    
T  16734831 tttagttacaattttcaagtgttactaa 16734804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 10 - 139
Target Start/End: Complemental strand, 12591959 - 12591830
Alignment:
Q  10 agataatactataaaatgtaactgaaactctttagtaacataagctttacataacatttgtttaaatgtcactaaacttaattagtaacatttttcgtga 109  Q
    ||||||||||||||| ||||||| ||||||||||||||||   ||||||| ||||| |||||  |  || |||||| ||||||| ||||||||||| |||    
T  12591959 agataatactataaattgtaactaaaactctttagtaacacgggctttacctaacaattgttcgagcgttactaaatttaattactaacatttttcttga 12591860  T
Q  110 tttagtttcatttttcaaatgttactaaat 139  Q
    ||||||| || ||||||| |||||||||||    
T  12591859 tttagttacaattttcaagtgttactaaat 12591830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 10 - 137
Target Start/End: Original strand, 11936741 - 11936868
Alignment:
Q  10 agataatactataaaatgtaactgaaactctttagtaacataagctttacataacatttgtttaaatgtcactaaacttaattagtaacatttttcgtga 109  Q
    ||||| ||||||||||||||||| |||| |||||||||||   ||||||  ||||| ||||| || |||  ||||| ||||||||||||||||||| |||    
T  11936741 agatagtactataaaatgtaactaaaacactttagtaacacgggctttatctaacaattgttcaagtgttgctaaatttaattagtaacatttttcttga 11936840  T
Q  110 tttagtttcatttttcaaatgttactaa 137  Q
    ||||||| || ||||||| |||||||||    
T  11936841 tttagttacaattttcaagtgttactaa 11936868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 9 - 139
Target Start/End: Complemental strand, 6684220 - 6684091
Alignment:
Q  9 tagataatactataaaatgtaactgaaactctttagtaacataagctttacataacatttgtttaaatgtcactaaacttaattagtaacatttttcgtg 108  Q
    |||||||||||||||||||||||| |||||||||||||||||   |||||| |||||  ||||  | ||| |||||| ||||||||||||||||||| ||    
T  6684220 tagataatactataaaatgtaactaaaactctttagtaacatggactttacctaaca-atgttcgagtgttactaaatttaattagtaacatttttcttg 6684122  T
Q  109 atttagtttcatttttcaaatgttactaaat 139  Q
    ||| |||| || |||| || |||||||||||    
T  6684121 attaagttacaatttttaagtgttactaaat 6684091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 10 - 137
Target Start/End: Complemental strand, 15361841 - 15361714
Alignment:
Q  10 agataatactataaaatgtaactgaaactctttagtaacataagctttacataacatttgtttaaatgtcactaaacttaattagtaacatttttcgtga 109  Q
    ||||| ||||||||||||||||| ||||  ||||||||||   ||||||| ||||| ||||| || |||  ||||| ||||||||||||||||||| |||    
T  15361841 agatagtactataaaatgtaactaaaacattttagtaacaccggctttacctaacaattgttcaagtgttgctaaatttaattagtaacatttttcttga 15361742  T
Q  110 tttagtttcatttttcaaatgttactaa 137  Q
    ||||||| || |||| || |||||||||    
T  15361741 tttagttacaatttttaagtgttactaa 15361714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 61 - 139
Target Start/End: Complemental strand, 15690513 - 15690435
Alignment:
Q  61 taacatttgtttaaatgtcactaaacttaattagtaacatttttcgtgatttagtttcatttttcaaatgttactaaat 139  Q
    ||||| |||||| | |||||||||| ||||||||||||||||||| |||||||||| || |||||||||||||||||||    
T  15690513 taacaattgtttgagtgtcactaaatttaattagtaacatttttcttgatttagttacaattttcaaatgttactaaat 15690435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 20 - 155
Target Start/End: Original strand, 29667899 - 29668036
Alignment:
Q  20 ataaaatgtaactgaaactctttagtaacataagctttacataacatttgtttaaatgtcactaaacttaattagtaacatttttc--gtgatttagttt 117  Q
    ||||||||| ||| || ||||||| ||||| ||||||||| ||||| ||||| |||||| |||||| |||||||||||||||||||   |||||| |||     
T  29667899 ataaaatgttactaaatctctttaataacacaagctttacctaacaattgttcaaatgttactaaatttaattagtaacatttttcttttgatttcgtta 29667998  T
Q  118 catttttcaaatgttactaaatctcaactttgttgtag 155  Q
    || ||||||| |||||| | ||||||| | ||||||||    
T  29667999 caattttcaattgttacaagatctcaattatgttgtag 29668036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 12 - 139
Target Start/End: Original strand, 14669322 - 14669449
Alignment:
Q  12 ataatactataaaatgtaactgaaactctttagtaacataagctttacataacatttgtttaaatgtcactaaacttaattagtaacatttttcgtgatt 111  Q
    ||||||||||||||||||||| ||||||||||||||||    |||||| ||||| || ||  | |||  | ||| ||||||||||||||||||| |||||    
T  14669322 ataatactataaaatgtaactaaaactctttagtaacacggactttacctaacaattattcgagtgttgcaaaatttaattagtaacatttttcttgatt 14669421  T
Q  112 tagtttcatttttcaaatgttactaaat 139  Q
    ||||| || ||||||| |||| ||||||    
T  14669422 tagttacaattttcaagtgttgctaaat 14669449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 10 - 116
Target Start/End: Original strand, 11948721 - 11948827
Alignment:
Q  10 agataatactataaaatgtaactgaaactctttagtaacataagctttacataacatttgtttaaatgtcactaaacttaattagtaacatttttcgtga 109  Q
    ||||| ||||||||||||||||| |||| |||||||||||   ||||||  ||||| ||||| || |||  ||||| ||||||||||||||||||| |||    
T  11948721 agatagtactataaaatgtaactaaaacactttagtaacacgggctttatctaacaattgttcaagtgttgctaaatttaattagtaacatttttcttga 11948820  T
Q  110 tttagtt 116  Q
    |||||||    
T  11948821 tttagtt 11948827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 10 - 139
Target Start/End: Original strand, 17719697 - 17719826
Alignment:
Q  10 agataatactataaaatgtaactgaaactctttagtaacataagctttacataacatttgtttaaatgtcactaaacttaattagtaacatttttcgtga 109  Q
    ||||||||||||||| ||||||| ||||||||||||||||    |||||  ||||| |||||  | |||  | ||| ||||||||||||||||||| |||    
T  17719697 agataatactataaattgtaactaaaactctttagtaacacggactttatctaacaattgttcgagtgttgcaaaaattaattagtaacatttttcttga 17719796  T
Q  110 tttagtttcatttttcaaatgttactaaat 139  Q
    ||||||| || ||||||| |||| ||||||    
T  17719797 tttagttacaattttcaagtgttgctaaat 17719826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 12 - 144
Target Start/End: Complemental strand, 34374951 - 34374817
Alignment:
Q  12 ataatactataaaatgtaactgaaactctttagtaacataagctttacataaca--tttgtttaaatgtcactaaacttaattagtaacatttttcgtga 109  Q
    ||||||||||||||| | ||| |||||||||||||||| |   ||| | |||||  |||||| |||||| || |||  |||||||||||||||||| |||    
T  34374951 ataatactataaaatattactcaaactctttagtaacacagattttgcctaacaattttgttcaaatgttacaaaatataattagtaacatttttcttga 34374852  T
Q  110 tttagtttcatttttcaaatgttactaaatctcaa 144  Q
    |||| || ||||||| || ||||||| ||||||||    
T  34374851 tttaattacattttttaattgttacttaatctcaa 34374817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 10 - 154
Target Start/End: Original strand, 9631128 - 9631273
Alignment:
Q  10 agataatactataaaa-tgtaactgaaactctttagtaacataagctttacataacatttgtttaaatgtcactaaacttaattagtaacatttttcgtg 108  Q
    |||||||||| ||||| ||||||| ||||||| ||||||||   ||| | | ||||| ||||| |||||| |||||| ||| |||||||| || ||| ||    
T  9631128 agataatactctaaaaatgtaactaaaactctatagtaacaggggctatgcctaacaattgttcaaatgttactaaatttacttagtaacgttcttcttg 9631227  T
Q  109 atttagtttcatttttcaaatgttactaaatctcaactttgttgta 154  Q
    |||||||   | ||||||| |||||||||||||||| | |||||||    
T  9631228 atttagtaatagttttcaagtgttactaaatctcaattatgttgta 9631273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 91 - 155
Target Start/End: Original strand, 6673673 - 6673737
Alignment:
Q  91 ttagtaacatttttcgtgatttagtttcatttttcaaatgttactaaatctcaactttgttgtag 155  Q
    ||||||||||||||| |||||||||| |||||||||| ||||||||||||| || | ||||||||    
T  6673673 ttagtaacatttttcttgatttagttacatttttcaactgttactaaatcttaattatgttgtag 6673737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 40 - 144
Target Start/End: Original strand, 27969921 - 27970025
Alignment:
Q  40 tttagtaacataagctttacataacatttgtttaaatgtcactaaacttaattagtaacatttttcgtgatttagtttcatttttcaaatgttactaaat 139  Q
    ||||||||||||  |||||| ||||||||||| ||||||  ||||| | || ||||||||| |||| || ||| ||| || ||||||||||||||||||     
T  27969921 tttagtaacatagactttacctaacatttgttgaaatgttgctaaattgaaatagtaacatatttcttgctttggttacaattttcaaatgttactaaac 27970020  T
Q  140 ctcaa 144  Q
    |||||    
T  27970021 ctcaa 27970025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 155
Target Start/End: Complemental strand, 1942695 - 1942550
Alignment:
Q  10 agataatactataaaatgtaactgaaactctttagtaacataagctttacataacatttgtttaaatgtcactaaacttaattagtaacatttttcgtga 109  Q
    ||||||||||||||||||||||| ||  | |||| ||||| | | ||||| || || ||| | |||||| | |||| || || ||||| ||||||| |||    
T  1942695 agataatactataaaatgtaactaaagatatttaataacaaaggttttacctagcaattgctcaaatgttattaaattttatcagtaatatttttcttga 1942596  T
Q  110 tttagtttcatttttcaaatgttactaaatctcaactttgttgtag 155  Q
    ||||||| || || ||||||||||| |||||| || | ||||||||    
T  1942595 tttagttacaattatcaaatgttaccaaatcttaattatgttgtag 1942550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 40 - 139
Target Start/End: Complemental strand, 2941102 - 2941002
Alignment:
Q  40 tttagtaacataagctttacataacatttgtttaaatgtcactaaacttaattagtaacat-ttttcgtgatttagtttcatttttcaaatgttactaaa 138  Q
    |||||||||| || |||||| ||||||||| | |||||| ||||||| ||||||||||||| ||||  |||||| ||| || |||| ||||||| |||||    
T  2941102 tttagtaacacaaactttacctaacatttgctcaaatgttactaaacataattagtaacatctttttttgattttgttacaatttttaaatgttcctaaa 2941003  T
Q  139 t 139  Q
    |    
T  2941002 t 2941002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 155
Target Start/End: Original strand, 28736592 - 28736727
Alignment:
Q  22 aaaatgtaactgaaactctttagtaacataagctttacataacatttgtttaaatgtcactaaactta--attagtaacatttttcgtgatttagtttca 119  Q
    ||||||| | ||||| |||||||| ||| | ||||||| ||||| ||||| ||||||| ||| |  ||  || ||||  ||||||||||||||| |  ||    
T  28736592 aaaatgttattgaaagtctttagttacaaaggctttacttaacaattgttcaaatgtcgctatatatataatcagtactatttttcgtgatttaatagca 28736691  T
Q  120 tttttcaaatgttactaaatctcaactttgttgtag 155  Q
    ||||| ||||||||||| || |||||||||||||||    
T  28736692 ttttttaaatgttactagatttcaactttgttgtag 28736727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 153
Target Start/End: Original strand, 23904327 - 23904469
Alignment:
Q  10 agataatactataaaatgtaactgaaactctttagtaacataagctttacataacatttgtttaaatgtcactaaacttaattagtaacatttttcgtga 109  Q
    ||||||||||||||| ||||| | || |||||| |||| |   ||||||| ||||| ||||| |||||| |||||| | | |||||||| |||||| | |    
T  23904327 agataatactataaagtgtaa-taaacctcttttgtaagaggggctttacctaacaattgttcaaatgttactaaattgatttagtaacttttttcttca 23904425  T
Q  110 tttagtttcatttttcaaatgttactaaatctcaactttgttgt 153  Q
    ||||||  || ||||||| |||||||| ||||||| | ||||||    
T  23904426 tttagtagcaattttcaagtgttactagatctcaattatgttgt 23904469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 116
Target Start/End: Complemental strand, 10070778 - 10070675
Alignment:
Q  12 ataatactataaaatgtaactgaaactctttagtaacataagctttacataacatttgtttaaatgtcactaaacttaattagtaacatttttcgtgatt 111  Q
    ||||||||||||||||||||| ||||| ||||||||||    |||||| ||||| || ||| | ||| | |||| ||||||||||||| ||||  |||||    
T  10070778 ataatactataaaatgtaactaaaact-tttagtaacacggactttacgtaacaattatttgagtgttattaaatttaattagtaacaattttgttgatt 10070680  T
Q  112 tagtt 116  Q
    |||||    
T  10070679 tagtt 10070675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 115
Target Start/End: Original strand, 23264471 - 23264575
Alignment:
Q  11 gataatactataaaatgtaactgaaactctttagtaacataagctttacataacatttgtttaaatgtcactaaacttaattagtaacatttttcgtgat 110  Q
    |||||||||||||| | |  ||||| |||||||||||||     ||||| ||||| |||||  ||||| |||||| ||||||||||||| ||||| ||||    
T  23264471 gataatactataaagttttgctgaagctctttagtaacacggattttacctaacaattgttcgaatgttactaaatttaattagtaacaattttcttgat 23264570  T
Q  111 ttagt 115  Q
    |||||    
T  23264571 ttagt 23264575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 115
Target Start/End: Original strand, 30481224 - 30481307
Alignment:
Q  32 tgaaactctttagtaacataagctttacataacatttgtttaaatgtcactaaacttaattagtaacatttttcgtgatttagt 115  Q
    |||| |||||||||||||| | |||||  ||| ||||||| || ||| |||| | |||||||| |||||||||| |||||||||    
T  30481224 tgaagctctttagtaacatgatctttatctaaaatttgttcaattgttactagatttaattagcaacatttttcttgatttagt 30481307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 55 - 155
Target Start/End: Original strand, 10935800 - 10935901
Alignment:
Q  55 tttacataacatttgtttaaatgtcactaaacttaattagtaacatttttcgtgatttagt-ttcatttttcaaatgttactaaatctcaactttgttgt 153  Q
    ||||| ||||| ||||| |||||| |||  |  |||||||||||||||||| |||||||||  |  ||||||||| |||| || ||||||| ||||||||    
T  10935800 tttacctaacaattgttcaaatgttactggatataattagtaacatttttcatgatttagtaatattttttcaaacgttattagatctcaattttgttgt 10935899  T
Q  154 ag 155  Q
    ||    
T  10935900 ag 10935901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 143
Target Start/End: Original strand, 6346862 - 6346965
Alignment:
Q  40 tttagtaacataagctttacataacatttgtttaaatgtcactaaacttaattagtaacattt-ttcgtgatttagtttcatttttcaaatgttactaaa 138  Q
    |||||||||||| ||||||| ||||||||  | |||||| || ||| |||| ||||||||||| ||  |||||||||| || |||| |  ||||||||||    
T  6346862 tttagtaacataggctttacctaacattt-atcaaatgttacaaaatttaaatagtaacatttatttttgatttagttacaattttaatgtgttactaaa 6346960  T
Q  139 tctca 143  Q
    |||||    
T  6346961 tctca 6346965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 4e-28; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 12 - 155
Target Start/End: Original strand, 9633418 - 9633561
Alignment:
Q  12 ataatactataaaatgtaactgaaactctttagtaacataagctttacataacatttgtttaaatgtcactaaacttaattagtaacatttttcgtgatt 111  Q
    ||||| || |||||||||||| ||||||||||||||||   ||||||| ||||| |||||||||||| |||||| ||||||||||||||||||   ||||    
T  9633418 ataatgctctaaaatgtaactaaaactctttagtaacaggggctttacctaacaattgtttaaatgtaactaaatttaattagtaacatttttttcgatt 9633517  T
Q  112 tagtttcatttttcaaatgttactaaatctcaactttgttgtag 155  Q
    ||||   | ||||||| |||||||||||||||| | ||||||||    
T  9633518 tagtaatagttttcaagtgttactaaatctcaattatgttgtag 9633561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 34 - 155
Target Start/End: Complemental strand, 5498580 - 5498459
Alignment:
Q  34 aaactctttagtaacataagctttacataacatttgtttaaatgtcactaaacttaattagtaacatttttcgtgatttagtttcatttttcaaatgtta 133  Q
    |||||||||||||||||| | ||||| ||||| ||||| | | || |||||| ||||||||||||||||||| |||||||||| ||||||| || |||||    
T  5498580 aaactctttagtaacataggttttacctaacaattgttcagaagttactaaatttaattagtaacatttttcttgatttagttacattttttaattgtta 5498481  T
Q  134 ctaaatctcaactttgttgtag 155  Q
    ||||||||||| | ||||||||    
T  5498480 ctaaatctcaattatgttgtag 5498459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 12 - 139
Target Start/End: Original strand, 1627923 - 1628050
Alignment:
Q  12 ataatactataaaatgtaactgaaactctttagtaacataagctttacataacatttgtttaaatgtcactaaacttaattagtaacatttttcgtgatt 111  Q
    ||||||||||||||||||||| ||||||||| ||||||    |||||| ||||| ||||| || ||| |||||| ||||||||||| ||||||| |||||    
T  1627923 ataatactataaaatgtaactaaaactcttttgtaacacggactttacttaacaattgttcaagtgttactaaatttaattagtaatatttttcttgatt 1628022  T
Q  112 tagtttcatttttcaaatgttactaaat 139  Q
    ||||| || ||||||| |||||||||||    
T  1628023 tagttacaattttcaagtgttactaaat 1628050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 10 - 137
Target Start/End: Complemental strand, 1654702 - 1654575
Alignment:
Q  10 agataatactataaaatgtaactgaaactctttagtaacataagctttacataacatttgtttaaatgtcactaaacttaattagtaacatttttcgtga 109  Q
    ||||| ||||||||||||||||| |||| ||||| ||||| | ||||||| ||||| ||||| || |||  ||||| ||||||||||||||||||| |||    
T  1654702 agatagtactataaaatgtaactaaaacactttaataacacaggctttacttaacaattgttcaagtgttgctaaatttaattagtaacatttttcttga 1654603  T
Q  110 tttagtttcatttttcaaatgttactaa 137  Q
    ||||||| || ||||||| |||||||||    
T  1654602 tttagttacaattttcaattgttactaa 1654575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 16 - 134
Target Start/End: Complemental strand, 2550286 - 2550168
Alignment:
Q  16 tactataaaatgtaactgaaactctttagtaacataagctttacataacatttgtttaaatgtcactaaacttaattagtaacatttttcgtgatttagt 115  Q
    ||||||||||||||||| |||| ||||||||||| | ||||||| ||||| ||||| || |||  ||||| ||||||||||||||||||| |||||||||    
T  2550286 tactataaaatgtaactaaaacactttagtaacacaggctttacctaacaattgttcaagtgttgctaaatttaattagtaacatttttcttgatttagt 2550187  T
Q  116 ttcatttttcaaatgttac 134  Q
    | || ||||||| ||||||    
T  2550186 tacaattttcaagtgttac 2550168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 10 - 139
Target Start/End: Complemental strand, 13846118 - 13845989
Alignment:
Q  10 agataatactataaaatgtaactgaaactctttagtaacataagctttacataacatttgtttaaatgtcactaaacttaattagtaacatttttcgtga 109  Q
    ||||| ||||||||||||||||| |||| |||||||||||   ||||||| ||||| ||||| || |||  ||||| ||||||||||||||||||| |||    
T  13846118 agatagtactataaaatgtaactaaaacactttagtaacacgggctttacctaacaattgttcaagtgttgctaaatttaattagtaacatttttcttga 13846019  T
Q  110 tttagtttcatttttcaaatgttactaaat 139  Q
    ||||||| || ||||||| |||| ||||||    
T  13846018 tttagttacaattttcaagtgttgctaaat 13845989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 14 - 135
Target Start/End: Complemental strand, 26707981 - 26707860
Alignment:
Q  14 aatactataaaatgtaactgaaactctttagtaacataagctttacataacatttgtttaaatgtcactaaacttaattagtaacatttttcgtgattta 113  Q
    |||||||| |||||| |||||| ||||||||||||| |  |||||| ||||| ||||| |||||| |||||| ||||||||||||||||||| |||||||    
T  26707981 aatactatgaaatgttactgaacctctttagtaacagagactttacctaacaattgttcaaatgttactaaatttaattagtaacatttttcttgattta 26707882  T
Q  114 gtttcatttttcaaatgttact 135  Q
    ||  |  |||||||||||||||    
T  26707881 gtaaccattttcaaatgttact 26707860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 11 - 137
Target Start/End: Original strand, 7407729 - 7407855
Alignment:
Q  11 gataatactataaaatgtaactgaaactctttagtaacataagctttacataacatttgtttaaatgtcactaaacttaattagtaacatttttcgtgat 110  Q
    |||| ||||||||||||||||| |||| |||||||||||   ||||||| ||||| ||||| || |||  ||||| ||||||||||| ||||||| ||||    
T  7407729 gatagtactataaaatgtaactaaaacactttagtaacacgggctttacctaacaattgttcaagtgttgctaaatttaattagtaatatttttcttgat 7407828  T
Q  111 ttagtttcatttttcaaatgttactaa 137  Q
    |||||| || ||||||| |||||||||    
T  7407829 ttagttacaattttcaagtgttactaa 7407855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 132
Target Start/End: Original strand, 16457314 - 16457427
Alignment:
Q  19 tataaaatgtaactgaaactctttagtaacataagctttacataacatttgtttaaatgtcactaaacttaattagtaacatttttcgtgatttagtttc 118  Q
    |||||||||| |||||| || ||||||||||  |||||||| ||||| ||| | |||||| |||||| ||||||||||||||||||| |||||||||| |    
T  16457314 tataaaatgttactgaagctttttagtaacacgagctttacctaacaattgctcaaatgttactaaatttaattagtaacatttttcttgatttagttac 16457413  T
Q  119 atttttcaaatgtt 132  Q
    | ||||||| ||||    
T  16457414 aattttcaattgtt 16457427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 10 - 113
Target Start/End: Original strand, 2943188 - 2943291
Alignment:
Q  10 agataatactataaaatgtaactgaaactctttagtaacataagctttacataacatttgtttaaatgtcactaaacttaattagtaacatttttcgtga 109  Q
    ||||||||||||||||||||||| |||| |||||||||||   |||| || ||||| |||||  ||||| |||||| ||||||||||||||||||| |||    
T  2943188 agataatactataaaatgtaactaaaacactttagtaacacgggcttaacctaacaattgttcgaatgttactaaatttaattagtaacatttttcttga 2943287  T
Q  110 ttta 113  Q
    ||||    
T  2943288 ttta 2943291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 12 - 144
Target Start/End: Original strand, 27713415 - 27713544
Alignment:
Q  12 ataatactataaaatgtaactgaaactctttagtaacataagctttacataacatttgtttaaatgtcactaaacttaattagtaacatttttcgtgatt 111  Q
    ||||||||||||||| |  || ||||| |||||||||||| | ||| | ||||| || ||||||||| |||||| |||||||||||| ||||   ||| |    
T  27713415 ataatactataaaatattgctaaaactatttagtaacataggttttgcctaacaattatttaaatgttactaaatttaattagtaacttttt---tgaat 27713511  T
Q  112 tagtttcatttttcaaatgttactaaatctcaa 144  Q
    ||||| ||||||| |||||||||||||||||||    
T  27713512 tagttacattttttaaatgttactaaatctcaa 27713544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 12 - 115
Target Start/End: Complemental strand, 36035413 - 36035310
Alignment:
Q  12 ataatactataaaatgtaactgaaactctttagtaacataagctttacataacatttgtttaaatgtcactaaacttaattagtaacatttttcgtgatt 111  Q
    ||||||||||||||||||||| || |||||||||||||  |||||||| ||||| ||||  || ||| |||||| ||||||||||  ||||||| |||||    
T  36035413 ataatactataaaatgtaactaaagctctttagtaacacgagctttacctaacaattgtacaattgttactaaatttaattagtattatttttcttgatt 36035314  T
Q  112 tagt 115  Q
    ||||    
T  36035313 tagt 36035310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 31 - 141
Target Start/End: Original strand, 1613208 - 1613318
Alignment:
Q  31 ctgaaactctttagtaacataagctttacataacatttgtttaaatgtcactaaacttaattagtaacatttttcgtgatttagtttcatttttcaaatg 130  Q
    ||||| || ||||||||||   ||||||| ||| | ||| | || ||| |||||| ||| ||||||||||||||| |||||||||| |||||||||| ||    
T  1613208 ctgaagctatttagtaacaggggctttacctaaaaattggtcaactgttactaaatttatttagtaacatttttcttgatttagttacatttttcaactg 1613307  T
Q  131 ttactaaatct 141  Q
    |||||||||||    
T  1613308 ttactaaatct 1613318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 67 - 155
Target Start/End: Original strand, 27259476 - 27259564
Alignment:
Q  67 ttgtttaaatgtcactaaacttaattagtaacatttttcgtgatttagtttcatttttcaaatgttactaaatctcaactttgttgtag 155  Q
    ||||| |||||| |||||| ||||||||||||||||| | |||||||||   | ||||||| |||||||||||||||| | ||||||||    
T  27259476 ttgttcaaatgttactaaatttaattagtaacattttgcttgatttagtaatagttttcaattgttactaaatctcaattatgttgtag 27259564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 65
Target Start/End: Complemental strand, 28745099 - 28745046
Alignment:
Q  12 ataatactataaaatgtaactgaaactctttagtaacataagctttacataaca 65  Q
    |||||||| |||||||||||| |||||||||||||||||  ||||||| |||||    
T  28745099 ataatactctaaaatgtaactaaaactctttagtaacatgtgctttacctaaca 28745046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 69
Target Start/End: Complemental strand, 36035588 - 36035531
Alignment:
Q  12 ataatactataaaatgtaactgaaactctttagtaacataagctttacataacatttg 69  Q
    |||||||||||||||||| || |||||||| | ||||||  ||||||| |||||||||    
T  36035588 ataatactataaaatgtagctaaaactcttaaataacatgggctttacctaacatttg 36035531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 6e-27; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 10 - 139
Target Start/End: Complemental strand, 10022250 - 10022121
Alignment:
Q  10 agataatactataaaatgtaactgaaactctttagtaacataagctttacataacatttgtttaaatgtcactaaacttaattagtaacatttttcgtga 109  Q
    ||||| || |||||||||||||| ||| ||||||||||||  |||||||| ||||| ||||| |  ||| |||||||||||||||||||||||||  |||    
T  10022250 agatagtaatataaaatgtaactaaaattctttagtaacacgagctttacctaacaattgttcatgtgttactaaacttaattagtaacattttttctga 10022151  T
Q  110 tttagtttcatttttcaaatgttactaaat 139  Q
    ||||||| || ||||||| |||||||||||    
T  10022150 tttagttacaattttcaattgttactaaat 10022121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 9 - 139
Target Start/End: Original strand, 9242457 - 9242587
Alignment:
Q  9 tagataatactataaaatgtaactgaaactctttagtaacataagctttacataacatttgtttaaatgtcactaaacttaattagtaacatttttcgtg 108  Q
    |||||||||||||||||||||||| |||||||||||||||||   |||||  ||||| ||||| || ||| || ||| ||||||||||||| ||||| ||    
T  9242457 tagataatactataaaatgtaactaaaactctttagtaacatggactttatctaacaattgttcaagtgttacaaaatttaattagtaacaattttcttg 9242556  T
Q  109 atttagtttcatttttcaaatgttactaaat 139  Q
    |||||||| || ||||||| |||| ||||||    
T  9242557 atttagttacaattttcaagtgttgctaaat 9242587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 12 - 157
Target Start/End: Complemental strand, 30089859 - 30089714
Alignment:
Q  12 ataatactataaaatgtaactgaaactctttagtaacataagctttacataacatttgtttaaatgtcactaaacttaattagtaacatttttcgtgatt 111  Q
    ||||||||||||||||||||| || ||||||||||||||  ||||| | ||||| ||||| |||||| ||||||  |||| ||||||||||||| |||||    
T  30089859 ataatactataaaatgtaactaaagctctttagtaacatgggcttttcctaacaattgttcaaatgttactaaatataatcagtaacatttttcttgatt 30089760  T
Q  112 tagtttcatttttcaaatgttactaaatctcaactttgttgtagcg 157  Q
    ||||  || ||||||| |||||||| || |||| | | ||||||||    
T  30089759 tagtaacagttttcaagtgttactagatgtcaattattttgtagcg 30089714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 10 - 136
Target Start/End: Original strand, 20277334 - 20277460
Alignment:
Q  10 agataatactataaaatgtaactgaaactctttagtaacataagctttacataacatttgtttaaatgtcactaaacttaattagtaacatttttcgtga 109  Q
    ||||||||||||| ||||||||| || |||||||||||||   ||||||| ||||| |||||||||||| |||||| ||||||| ||| ||||||  |||    
T  20277334 agataatactatataatgtaactaaagctctttagtaacaggtgctttacctaacaattgtttaaatgttactaaatttaattaataatattttttttga 20277433  T
Q  110 tttagtttcatttttcaaatgttacta 136  Q
    ||||||| || ||||| | ||||||||    
T  20277434 tttagttacaattttcgagtgttacta 20277460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 9 - 155
Target Start/End: Original strand, 26608512 - 26608658
Alignment:
Q  9 tagataatactataaaatgtaactgaaactctttagtaacataagctttacataacatttgtttaaatgtcactaaacttaattagtaacatttttcgtg 108  Q
    |||||| |||||||||||| |||| || ||||||||||||||  ||||||  ||||| ||||| |||||| |||||| ||||| ||||||||||||| ||    
T  26608512 tagatagtactataaaatgcaactaaagctctttagtaacatgggctttatctaacaattgttcaaatgttactaaatttaatcagtaacatttttcttg 26608611  T
Q  109 atttagtttcatttttcaaatgttactaaatctcaactttgttgtag 155  Q
    ||||  |  || |||||||||||||||| || |||| | ||||||||    
T  26608612 atttcataacaattttcaaatgttactagatgtcaattatgttgtag 26608658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 10 - 137
Target Start/End: Original strand, 4685377 - 4685504
Alignment:
Q  10 agataatactataaaatgtaactgaaactctttagtaacataagctttacataacatttgtttaaatgtcactaaacttaattagtaacatttttcgtga 109  Q
    ||||| ||||||||||||||||| |||| ||||||||| |   ||||||| ||||| ||||| || |||  ||||| ||||||| ||||||||||| |||    
T  4685377 agatagtactataaaatgtaactaaaacactttagtaatacgggctttacctaacaattgttcaagtgttgctaaatttaattactaacatttttcttga 4685476  T
Q  110 tttagtttcatttttcaaatgttactaa 137  Q
    ||||||| || ||||||| |||||||||    
T  4685477 tttagttacaattttcaagtgttactaa 4685504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 10 - 136
Target Start/End: Original strand, 26621065 - 26621191
Alignment:
Q  10 agataatactataaaatgtaactgaaactctttagtaacataagctttacataacatttgtttaaatgtcactaaacttaattagtaacatttttcgtga 109  Q
    ||||||||||||||||||||||| || ||||||||||||||    ||||  ||||| ||||||||||||  ||||| ||||| ||||||||||||| | |    
T  26621065 agataatactataaaatgtaactaaagctctttagtaacatggcttttatctaacaattgtttaaatgttgctaaatttaatcagtaacatttttcttaa 26621164  T
Q  110 tttagtttcatttttcaaatgttacta 136  Q
    ||||||  || ||||||| ||||||||    
T  26621165 tttagtaacaattttcaagtgttacta 26621191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 19 - 139
Target Start/End: Original strand, 26224961 - 26225081
Alignment:
Q  19 tataaaatgtaactgaaactctttagtaacataagctttacataacatttgtttaaatgtcactaaacttaattagtaacatttttcgtgatttagtttc 118  Q
    ||||||||| |||| ||||||||||||||||   ||||||| ||| | ||||| || ||| |||||| |||||||||| |||||||| |||||||||| |    
T  26224961 tataaaatgaaactaaaactctttagtaacaccggctttacctaataattgttcaagtgttactaaatttaattagtatcatttttcttgatttagttac 26225060  T
Q  119 atttttcaaatgttactaaat 139  Q
    | ||||||| ||||| |||||    
T  26225061 aattttcaagtgttattaaat 26225081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 16 - 139
Target Start/End: Original strand, 26205395 - 26205518
Alignment:
Q  16 tactataaaatgtaactgaaactctttagtaacataagctttacataacatttgtttaaatgtcactaaacttaattagtaacatttttcgtgatttagt 115  Q
    |||||| ||||| |||| ||||||||||||||||  |||||||| || || || || || ||| |||||| ||||||||||||||||||| |||||||||    
T  26205395 tactatcaaatgaaactaaaactctttagtaacaccagctttacctaccaatttttcaagtgttactaaatttaattagtaacatttttcttgatttagt 26205494  T
Q  116 ttcatttttcaaatgttactaaat 139  Q
    |  | ||||||| ||| |||||||    
T  26205495 tataattttcaagtgtcactaaat 26205518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 12 - 113
Target Start/End: Complemental strand, 16086611 - 16086510
Alignment:
Q  12 ataatactataaaatgtaactgaaactctttagtaacataagctttacataacatttgtttaaatgtcactaaacttaattagtaacatttttcgtgatt 111  Q
    ||||||||||||||||| |||||| || || |||||||| |||||||| ||||| || || |||||| | |||| ||||||||||||| ||||  |||||    
T  16086611 ataatactataaaatgttactgaagctattaagtaacatgagctttacctaacaattattcaaatgttattaaatttaattagtaacagtttttctgatt 16086512  T
Q  112 ta 113  Q
    ||    
T  16086511 ta 16086510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 12 - 115
Target Start/End: Original strand, 26619080 - 26619182
Alignment:
Q  12 ataatactataaaatgtaactgaaactctttagtaacataagctttacataacatttgtttaaatgtcactaaacttaattagtaacatttttcgtgatt 111  Q
    |||||||||| |||||||||| ||  |||||||||||||| | ||||| || || ||||| |||||| | |||| ||||| ||||||||||||| |||||    
T  26619080 ataatactatcaaatgtaactaaagttctttagtaacataggatttaccta-caattgttcaaatgttaataaatttaatcagtaacatttttcttgatt 26619178  T
Q  112 tagt 115  Q
    ||||    
T  26619179 tagt 26619182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 55 - 139
Target Start/End: Complemental strand, 16170352 - 16170268
Alignment:
Q  55 tttacataacatttgtttaaatgtcactaaacttaattagtaacatttttcgtgatttagtttcatttttcaaatgttactaaat 139  Q
    ||||| ||||| |||||||| ||| |||||| ||||||||||||| |||| ||||||| ||| || ||||||| |||| ||||||    
T  16170352 tttacctaacaattgtttaagtgttactaaatttaattagtaacactttttgtgatttggttacaattttcaagtgttgctaaat 16170268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 141
Target Start/End: Complemental strand, 3234390 - 3234322
Alignment:
Q  73 aaatgtcactaaacttaattagtaacatttttcgtgatttagtttcatttttcaaatgttactaaatct 141  Q
    |||||| |||||| | | |||||| |||||||  | |||||||| |||||||||| |||||||||||||    
T  3234390 aaatgttactaaattaatttagtaccatttttttttatttagttacatttttcaactgttactaaatct 3234322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 155
Target Start/End: Original strand, 29932407 - 29932467
Alignment:
Q  95 taacatttttcgtgatttagtttcatttttcaaatgttactaaatctcaactttgttgtag 155  Q
    |||||||||||| ||||||||   |||||||||||||||||||| | ||| | ||||||||    
T  29932407 taacatttttcgcgatttagtaatatttttcaaatgttactaaaacgcaattatgttgtag 29932467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 6e-27; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 11 - 144
Target Start/End: Original strand, 24558970 - 24559103
Alignment:
Q  11 gataatactataaaatgtaactgaaactctttagtaacataagctttacataacatttgtttaaatgtcactaaacttaattagtaacatttttcgtgat 110  Q
    |||||||||||||||| | ||| ||| |||||||||||| |  | |||| ||||| | ||| |||||| |||||| ||||||||||||||||||| ||||    
T  24558970 gataatactataaaatatcactaaaattctttagtaacacagccgttacctaacaatcgttcaaatgttactaaatttaattagtaacatttttcttgat 24559069  T
Q  111 ttagtttcatttttcaaatgttactaaatctcaa 144  Q
    |||||| ||||||| || ||||||||||||||||    
T  24559070 ttagttacattttttaattgttactaaatctcaa 24559103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 11 - 139
Target Start/End: Original strand, 47066009 - 47066137
Alignment:
Q  11 gataatactataaaatgtaactgaaactctttagtaacataagctttacataacatttgtttaaatgtcactaaacttaattagtaacatttttcgtgat 110  Q
    |||| ||||||||||||||||| ||||||||| ||||||   ||||||| ||||| ||||| |  ||| |||||| ||||||| ||||||||||| ||||    
T  47066009 gatagtactataaaatgtaactaaaactctttggtaacacgggctttacctaacaattgttcaggtgttactaaatttaattactaacatttttcttgat 47066108  T
Q  111 ttagtttcatttttcaaatgttactaaat 139  Q
    |||||| || ||||||| |||||||||||    
T  47066109 ttagttacaattttcaagtgttactaaat 47066137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 10 - 134
Target Start/End: Complemental strand, 43600393 - 43600269
Alignment:
Q  10 agataatactataaaatgtaactgaaactctttagtaacataagctttacataacatttgtttaaatgtcactaaacttaattagtaacatttttcgtga 109  Q
    ||||| ||||||||||||||||| |||| |||||||||||   ||||||| ||||| ||||| || | |  ||||| ||||||||||||||||||| |||    
T  43600393 agatagtactataaaatgtaactaaaacactttagtaacacgggctttacctaacaattgttcaagttttgctaaatttaattagtaacatttttcttga 43600294  T
Q  110 tttagtttcatttttcaaatgttac 134  Q
    ||||||| || ||||||| ||||||    
T  43600293 tttagttacaattttcaagtgttac 43600269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 11 - 139
Target Start/End: Complemental strand, 53300476 - 53300348
Alignment:
Q  11 gataatactataaaatgtaactgaaactctttagtaacataagctttacataacatttgtttaaatgtcactaaacttaattagtaacatttttcgtgat 110  Q
    |||| ||| ||||||||||||| ||||||||| ||||||   ||||||| ||||| |||||||  ||| |||||| ||||||| ||||||||||| ||||    
T  53300476 gatagtacgataaaatgtaactaaaactctttggtaacacgggctttacctaacaattgtttaggtgttactaaatttaattactaacatttttcttgat 53300377  T
Q  111 ttagtttcatttttcaaatgttactaaat 139  Q
    ||| || || ||||||| |||||||||||    
T  53300376 ttaattacaattttcaagtgttactaaat 53300348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 10 - 139
Target Start/End: Original strand, 1684926 - 1685055
Alignment:
Q  10 agataatactataaaatgtaactgaaactctttagtaacataagctttacataacatttgtttaaatgtcactaaacttaattagtaacatttttcgtga 109  Q
    ||||||||||||||| ||||||| ||||||||||||||||    |||||  ||||| |||||  | |||  | ||| ||||||||||||||||||| |||    
T  1684926 agataatactataaattgtaactaaaactctttagtaacacggactttatctaacaattgttcgagtgttgcaaaatttaattagtaacatttttcttga 1685025  T
Q  110 tttagtttcatttttcaaatgttactaaat 139  Q
    ||||||| || ||||||| |||| ||||||    
T  1685026 tttagttacaattttcaagtgttgctaaat 1685055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 10 - 139
Target Start/End: Complemental strand, 1152170 - 1152041
Alignment:
Q  10 agataatactataaaatgtaactgaaactctttagtaacataagctttacataacatttgtttaaatgtcactaaacttaattagtaacatttttcgtga 109  Q
    |||||||| |||||| ||||||| ||||||||||||||||    |||||  ||||| |||||| | |||  | ||| ||||||||||||||||||| | |    
T  1152170 agataatattataaactgtaactaaaactctttagtaacacggactttatctaacaattgtttgagtgttgcaaaatttaattagtaacatttttcttaa 1152071  T
Q  110 tttagtttcatttttcaaatgttactaaat 139  Q
    ||||||| || ||||||| |||| ||||||    
T  1152070 tttagttacaattttcaagtgttgctaaat 1152041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 11 - 116
Target Start/End: Original strand, 21539247 - 21539351
Alignment:
Q  11 gataatactataaaatgtaactgaaactctttagtaacataagctttacataacatttgtttaaatgtcactaaacttaattagtaacatttttcgtgat 110  Q
    |||||||||| ||||||||||| || ||||||||||||| | |  |||  ||||| |||||||||||| |||||| ||||| ||||||||||| | ||||    
T  21539247 gataatactaaaaaatgtaactaaatctctttagtaaca-aggacttatctaacaattgtttaaatgttactaaatttaatcagtaacattttccttgat 21539345  T
Q  111 ttagtt 116  Q
    ||||||    
T  21539346 ttagtt 21539351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 21 - 115
Target Start/End: Original strand, 4904125 - 4904219
Alignment:
Q  21 taaaatgtaactgaaactctttagtaacataagctttacataacatttgtttaaatgtcactaaacttaattagtaacatttttcgtgatttagt 115  Q
    |||||||||||| || | |||||||||||   ||||||| ||||| ||||  |||||| |||||| ||||| ||||||||||||| |||||||||    
T  4904125 taaaatgtaactaaagcactttagtaacaagtgctttacctaacaattgtacaaatgttactaaatttaatcagtaacatttttcatgatttagt 4904219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 135
Target Start/End: Original strand, 37750963 - 37751088
Alignment:
Q  9 tagataatactataaaatgtaactgaaactctttagtaacataagctttacataacatttgtttaaatgtcactaaacttaattagtaacatttttcgtg 108  Q
    |||||||||||||||||||||||| || ||  ||||||||||  ||||||  ||||| |||   |||||| ||| |  ||||||||||||||||||  ||    
T  37750963 tagataatactataaaatgtaactaaagcttcttagtaacattggctttatctaacaattgcgcaaatgttactgattttaattagtaacattttt-ttg 37751061  T
Q  109 atttagtttcatttttcaaatgttact 135  Q
    |||||||  || |||||| ||||||||    
T  37751062 atttagtgacaattttcatatgttact 37751088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 65
Target Start/End: Original strand, 27739749 - 27739804
Alignment:
Q  10 agataatactataaaatgtaactgaaactctttagtaacataagctttacataaca 65  Q
    ||||||||||||||||||||||| || ||||| ||||||||  ||||||| |||||    
T  27739749 agataatactataaaatgtaactaaagctcttcagtaacatgggctttacctaaca 27739804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 49
Target Start/End: Complemental strand, 48465498 - 48465460
Alignment:
Q  11 gataatactataaaatgtaactgaaactctttagtaaca 49  Q
    |||||||||||||||||| ||||||||| ||||||||||    
T  48465498 gataatactataaaatgttactgaaactttttagtaaca 48465460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 6e-27; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 10 - 139
Target Start/End: Complemental strand, 51758879 - 51758750
Alignment:
Q  10 agataatactataaaatgtaactgaaactctttagtaacataagctttacataacatttgtttaaatgtcactaaacttaattagtaacatttttcgtga 109  Q
    ||||||||||||||||||||||| |||||||||||||| |  |||||||| ||| | |||||  | |||  ||||| ||||||| ||||||||||| |||    
T  51758879 agataatactataaaatgtaactaaaactctttagtaatacgagctttacctaataattgttcgagtgttgctaaatttaattactaacatttttcttga 51758780  T
Q  110 tttagtttcatttttcaaatgttactaaat 139  Q
    ||||||| || |||||||||||||||||||    
T  51758779 tttagttacaattttcaaatgttactaaat 51758750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 12 - 155
Target Start/End: Complemental strand, 12190076 - 12189933
Alignment:
Q  12 ataatactataaaatgtaactgaaactctttagtaacataagctttacataacatttgtttaaatgtcactaaacttaattagtaacatttttcgtgatt 111  Q
    ||||||||||||||  | ||| ||||||||||||||||   ||||||| ||||| ||||| |||||| |||||| ||||||||||| ||||||| |||||    
T  12190076 ataatactataaaaaattactaaaactctttagtaacacgggctttacctaacaattgttcaaatgttactaaatttaattagtaatatttttcttgatt 12189977  T
Q  112 tagtttcatttttcaaatgttactaaatctcaactttgttgtag 155  Q
    ||||| ||||||| || |||| |||| |||||| | ||||||||    
T  12189976 tagttacattttttaattgtttctaattctcaattatgttgtag 12189933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 8 - 155
Target Start/End: Complemental strand, 28637031 - 28636884
Alignment:
Q  8 gtagataatactataaaatgtaactgaaactctttagtaacataagctttacataacatttgtttaaatgtcactaaacttaattagtaacatttttcgt 107  Q
    ||||||| ||||||||||||||||| || |||||||| ||||    |||||| ||||| || || |||||| |||||| | ||||||||||||||||| |    
T  28637031 gtagatattactataaaatgtaactaaatctctttagcaacagtgactttacctaacaattattcaaatgttactaaattgaattagtaacatttttctt 28636932  T
Q  108 gatttagtttcatttttcaaatgttactaaatctcaactttgttgtag 155  Q
    ||||||||| || |||| ||||||||||| |||| || | ||||||||    
T  28636931 gatttagttacaatttttaaatgttactagatcttaattatgttgtag 28636884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 11 - 126
Target Start/End: Original strand, 39368614 - 39368730
Alignment:
Q  11 gataatactataaaa-tgtaactgaaactctttagtaacataagctttacataacatttgtttaaatgtcactaaacttaattagtaacatttttcgtga 109  Q
    ||||||||||||||| |||||||||| |||||||||| |||  ||||| | ||||| |||| ||||||| |||||  ||||||||||||||||||| |||    
T  39368614 gataatactataaaaatgtaactgaagctctttagtagcatgtgctttgcctaacaattgtataaatgtgactaattttaattagtaacatttttcttga 39368713  T
Q  110 tttagtttcatttttca 126  Q
    ||||||  |||||||||    
T  39368714 tttagtaacatttttca 39368730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 34 - 139
Target Start/End: Complemental strand, 16222880 - 16222775
Alignment:
Q  34 aaactctttagtaacataagctttacataacatttgtttaaatgtcactaaacttaattagtaacatttttcgtgatttagtttcatttttcaaatgtta 133  Q
    ||||||||||||||||   ||||||| ||||| || || || ||| |||||| || |||||||||||||||| |||||||||| || |||||||||||||    
T  16222880 aaactctttagtaacacgggctttacctaacaattattcaagtgttactaaattttattagtaacatttttcttgatttagttacaattttcaaatgtta 16222781  T
Q  134 ctaaat 139  Q
    ||||||    
T  16222780 ctaaat 16222775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 116
Target Start/End: Complemental strand, 3399740 - 3399642
Alignment:
Q  18 ctataaaatgtaactgaaactctttagtaacataagctttacataacatttgtttaaatgtcactaaacttaattagtaacatttttcgtgatttagtt 116  Q
    ||||||| ||| || ||| || ||||||||||||   ||||| ||||| ||||| |||||| |||||| ||||||||||||||||||| ||||||||||    
T  3399740 ctataaagtgttaccgaagctatttagtaacatagattttacctaacaattgttcaaatgttactaaatttaattagtaacatttttcatgatttagtt 3399642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 14 - 136
Target Start/End: Complemental strand, 18308270 - 18308148
Alignment:
Q  14 aatactataaaatgtaactgaaactctttagtaacataagctttacataacatttgtttaaatgtcactaaacttaattagtaacatttttcgtgattta 113  Q
    ||||||||||||||||||| || | ||| ||||||| | ||||||| ||||| ||||  |||||| | |||   ||||  |||||||||||| |||||||    
T  18308270 aatactataaaatgtaactaaagcccttcagtaacacaggctttacctaacaattgtagaaatgttaataattgtaatctgtaacatttttcttgattta 18308171  T
Q  114 gtttcatttttcaaatgttacta 136  Q
    ||  || ||||||||||||||||    
T  18308170 gtaacaattttcaaatgttacta 18308148  T

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Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 62 - 139
Target Start/End: Complemental strand, 15214401 - 15214324
Alignment:
Q  62 aacatttgtttaaatgtcactaaacttaattagtaacatttttcgtgatttagtttcatttttcaaatgttactaaat 139  Q
    |||| ||||| |||| | |||||| ||||||||||| ||||||| |||||||||| || ||||||| |||||||||||    
T  15214401 aacaattgttcaaatattactaaatttaattagtaaaatttttcttgatttagttgcaattttcaagtgttactaaat 15214324  T

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Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 155
Target Start/End: Complemental strand, 897571 - 897436
Alignment:
Q  19 tataaaatgtaactgaaactctttagtaacataagctttacataacatttgtttaaatgtcactaaacttaattagtaacatttttcgtgatttagtttc 118  Q
    ||||||||||||||  | |||||||||||||| | | |||| ||||| ||||| || ||| |||||| |||||||| |||||||||| | |||||||  |    
T  897571 tataaaatgtaactatagctctttagtaacatgaac-ttacctaacaattgttcaattgttactaaatttaattaggaacatttttcttcatttagtaac 897473  T
Q  119 atttttcaaatgttactaaatctcaactttgttgtag 155  Q
    | ||||||| ||| |||| |||| || | ||||||||    
T  897472 aattttcaactgtaactatatcttaattatgttgtag 897436  T

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Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 67 - 139
Target Start/End: Original strand, 37097371 - 37097443
Alignment:
Q  67 ttgtttaaatgtcactaaacttaattagtaacatttttcgtgatttagtttcatttttcaaatgttactaaat 139  Q
    ||||| |||||| |||||| || || ||||||||||||| |||||||||| || ||||||| |||||||||||    
T  37097371 ttgttcaaatgttactaaattttatcagtaacatttttcttgatttagttacaattttcaagtgttactaaat 37097443  T

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Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 136
Target Start/End: Original strand, 5911681 - 5911764
Alignment:
Q  53 gctttacataacatttgtttaaatgtcactaaacttaattagtaacatttttcgtgatttagtttcatttttcaaatgttacta 136  Q
    ||||||| ||||| ||||| || ||| |||||| ||||| ||||||||||||| ||||||||||  | ||||||| ||||||||    
T  5911681 gctttacctaacaattgttcaagtgttactaaatttaatcagtaacatttttcttgatttagttaaaattttcaagtgttacta 5911764  T

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Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 105
Target Start/End: Complemental strand, 1844078 - 1843983
Alignment:
Q  10 agataatactataaaatgtaactgaaactctttagtaacataagctttacataacatttgtttaaatgtcactaaacttaattagtaacatttttc 105  Q
    |||||||||||||||||| || | || | ||| ||||||||  | ||||| ||||| ||||| |||||| |||||| | ||| |||||||||||||    
T  1844078 agataatactataaaatgcaattaaagcccttcagtaacatggggtttacctaacaattgttcaaatgttactaaattcaatcagtaacatttttc 1843983  T

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Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 139
Target Start/End: Complemental strand, 15193973 - 15193916
Alignment:
Q  82 taaacttaattagtaacatttttcgtgatttagtttcatttttcaaatgttactaaat 139  Q
    |||| ||||||||||||||||||| |||||| ||| |  ||||||| |||||||||||    
T  15193973 taaatttaattagtaacatttttcttgatttcgttgctattttcaagtgttactaaat 15193916  T

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Target: scaffold0576 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0576
Description:

Target: scaffold0576; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 10 - 137
Target Start/End: Complemental strand, 6825 - 6698
Alignment:
Q  10 agataatactataaaatgtaactgaaactctttagtaacataagctttacataacatttgtttaaatgtcactaaacttaattagtaacatttttcgtga 109  Q
    ||||| ||||||||||||||||| ||||  ||||||||||   ||||||| ||||| ||||| || |||  ||||| ||||||||||||||||||| |||    
T  6825 agatagtactataaaatgtaactaaaacattttagtaacaccggctttacctaacaattgttcaagtgttgctaaatttaattagtaacatttttcttga 6726  T
Q  110 tttagtttcatttttcaaatgttactaa 137  Q
    ||||||| || |||| || |||||||||    
T  6725 tttagttacaatttttaagtgttactaa 6698  T

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Target: scaffold0684 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0684
Description:

Target: scaffold0684; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 9 - 139
Target Start/End: Original strand, 720 - 850
Alignment:
Q  9 tagataatactataaaatgtaactgaaactctttagtaacataagctttacataacatttgtttaaatgtcactaaacttaattagtaacatttttcgtg 108  Q
    |||||||||||||||||||||||| |||||||||||||||||   |||||  ||||| |||||  | |||  | ||| ||||||||||||| ||||| ||    
T  720 tagataatactataaaatgtaactaaaactctttagtaacatggactttatctaacaattgttcgagtgttgcaaaatttaattagtaacaattttcttg 819  T
Q  109 atttagtttcatttttcaaatgttactaaat 139  Q
    |||||||| || ||||||| |||| ||||||    
T  820 atttagttacaattttcaagtgttgctaaat 850  T

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Target: scaffold0069 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 10 - 127
Target Start/End: Original strand, 40672 - 40789
Alignment:
Q  10 agataatactataaaatgtaactgaaactctttagtaacataagctttacataacatttgtttaaatgtcactaaacttaattagtaacatttttcgtga 109  Q
    ||||||||||||||||||||||| |||||||||||||||||   |||||  ||||| |||||  | |||  | ||| ||||||||||||| ||||| |||    
T  40672 agataatactataaaatgtaactaaaactctttagtaacatggactttatctaacaattgttcgagtgttgcaaaatttaattagtaacaattttcttga 40771  T
Q  110 tttagtttcatttttcaa 127  Q
    ||||||| || |||||||    
T  40772 tttagttacaattttcaa 40789  T

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