View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17303_low_63 (Length: 213)
Name: NF17303_low_63
Description: NF17303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17303_low_63 |
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Alignment Details
Target: chr6 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 34686990 - 34687189
Alignment:
| Q |
1 |
ccaaacaccaacatttcaactagccgcgccattctccgaccaccgtaaccgtccctcgccggaccaccgtaactgtctctgcattctcgccggcgaagcc |
100 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34686990 |
ccaaacaccaacatttcaactaaccgcgccattctccgaccaccgtaaccgtccctcgccggaccaccgtaactgtctctgcattctcgccggcgaagcc |
34687089 |
T |
|
| Q |
101 |
aacatcattcttctcagagcactggtatttccgattgtttttctgtgttttcagtaacataacagtgtgcaattcttgatattgcaatgaatcgcgtttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34687090 |
aacatcattcttctcagagcactggtatttccgattgtttttctgtgttttcagtaacataacagtgtgcaattcttgatattgcaatgaatcgcgtttt |
34687189 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 171; Significance: 5e-92; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 26984935 - 26985138
Alignment:
| Q |
1 |
ccaaacaccaacatttcaactagccgcgccattctccgaccaccgtaaccgtccctcgccggaccaccgtaactgtctctgcattctcgccggcgaagcc |
100 |
Q |
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|
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
26984935 |
ccaaacaccaacaattcaactaaccgcgccattctccgaccaccgtaaccgtccctcgccggaccaccgtaactgtctctgcattctcgccggagaagcc |
26985034 |
T |
|
| Q |
101 |
aacatcattcttctcagagcactggtatttccgattgtttttctgtgttttcagtaacataacagtgtgcaatt----cttgatattgcaatgaatcgcg |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |
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| T |
26985035 |
aacatcattcttctcagagcactggtatttccgattgtttttctgtgttttcagtaacataacagtgtgcaattcttgcttgatattgcaatgaattgcg |
26985134 |
T |
|
| Q |
197 |
tttt |
200 |
Q |
| |
|
|||| |
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|
| T |
26985135 |
tttt |
26985138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 38 - 200
Target Start/End: Original strand, 27024793 - 27024952
Alignment:
| Q |
38 |
gaccaccgtaaccgtccctcgccggaccaccgtaactgtctctgcattctcgccggcgaagccaacatcattcttctcagagcactggtatttccgattg |
137 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27024793 |
gaccaccgtaaccgtccctcaccggaccaccgtaactgtctctccattctcgccggagaagccaacatcattcttctcagagcactggtatttccgattg |
27024892 |
T |
|
| Q |
138 |
tttttc--tgtgttttcagtaacataacagtgtgcaattcttgatattgcaatgaatcgcgtttt |
200 |
Q |
| |
|
|||||| || || |||| |||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
27024893 |
tttttctttgcgtgatcag-----taactgtgtgcaattcttgatattgcaatgaatcgcgtttt |
27024952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 73
Target Start/End: Original strand, 27024735 - 27024804
Alignment:
| Q |
4 |
aacaccaacatttcaactagccgcgccattctccgaccaccgtaaccgtccctcgccggaccaccgtaac |
73 |
Q |
| |
|
|||| ||||| |||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
27024735 |
aacatcaacacttcaactaaccgcgttattctccgaccaccgtaaccgtccctcaccggaccaccgtaac |
27024804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 119 - 200
Target Start/End: Complemental strand, 27080383 - 27080304
Alignment:
| Q |
119 |
gcactggtatttccgattgttttt---ctgtgttttcagtaacataacagtgtgcaattcttgatattgcaatgaatcgcgtttt |
200 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||||||||| || ||||||||||||||||||| ||||||||| |||||| |
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| T |
27080383 |
gcactggtatttccgatttttttttctctgtgttttcagtacca-----gtgtgcaattcttgatattacaatgaatcacgtttt |
27080304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 30227375 - 30227484
Alignment:
| Q |
1 |
ccaaacaccaacatttcaactagccgcgccattctccgaccaccgtaaccgtccctcgccggaccaccgtaactgtctctgcattctcgccggcgaagcc |
100 |
Q |
| |
|
||||||||||||| |||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |||||| |
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| T |
30227375 |
ccaaacaccaacacttcaactaaccgcgccattctccgaccaccgtaaccgtctctcgccggaccaccgtaaccgtctctgcattctcgccggagaagcc |
30227474 |
T |
|
| Q |
101 |
aacatcattc |
110 |
Q |
| |
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|||||||||| |
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|
| T |
30227475 |
aacatcattc |
30227484 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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