View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17303_low_64 (Length: 212)

Name: NF17303_low_64
Description: NF17303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17303_low_64
NF17303_low_64
[»] chr5 (22 HSPs)
chr5 (18-83)||(969859-969924)
chr5 (83-175)||(40145406-40145501)
chr5 (84-171)||(3921275-3921365)
chr5 (84-171)||(2252178-2252268)
chr5 (129-177)||(21370052-21370100)
chr5 (101-175)||(18520890-18520967)
chr5 (129-175)||(13811700-13811746)
chr5 (127-173)||(31132390-31132436)
chr5 (83-175)||(28177774-28177869)
chr5 (129-177)||(6679746-6679794)
chr5 (84-175)||(31008988-31009082)
chr5 (129-175)||(2740322-2740368)
chr5 (129-175)||(36732948-36732994)
chr5 (129-175)||(42414308-42414354)
chr5 (84-167)||(39688911-39688997)
chr5 (129-175)||(14831862-14831908)
chr5 (129-175)||(15409616-15409662)
chr5 (129-175)||(33149644-33149690)
chr5 (83-175)||(26720515-26720610)
chr5 (83-175)||(26990264-26990359)
chr5 (135-172)||(41470425-41470462)
chr5 (124-164)||(39557534-39557574)
[»] chr3 (23 HSPs)
chr3 (101-177)||(26754712-26754791)
chr3 (84-177)||(11907371-11907467)
chr3 (84-177)||(48375710-48375806)
chr3 (83-175)||(26141538-26141633)
chr3 (83-175)||(53982010-53982105)
chr3 (82-171)||(45058563-45058654)
chr3 (129-175)||(33644248-33644294)
chr3 (84-175)||(8076393-8076487)
chr3 (84-175)||(17470405-17470499)
chr3 (88-175)||(52629304-52629394)
chr3 (78-175)||(13898061-13898161)
chr3 (129-175)||(27714897-27714943)
chr3 (129-175)||(31456737-31456783)
chr3 (80-175)||(20764921-20765019)
chr3 (84-175)||(49607414-49607508)
chr3 (84-175)||(54868901-54868995)
chr3 (124-175)||(51419366-51419417)
chr3 (125-175)||(11347928-11347978)
chr3 (129-171)||(36331339-36331381)
chr3 (129-177)||(1758460-1758508)
chr3 (104-175)||(14623845-14623919)
chr3 (129-177)||(30801737-30801785)
chr3 (84-175)||(47531865-47531959)
[»] chr1 (26 HSPs)
chr1 (118-177)||(48489337-48489396)
chr1 (78-175)||(48716288-48716388)
chr1 (84-175)||(38632327-38632421)
chr1 (83-177)||(6260869-6260966)
chr1 (81-171)||(50591010-50591103)
chr1 (84-175)||(32813247-32813341)
chr1 (84-175)||(2581915-2582009)
chr1 (84-175)||(3000319-3000413)
chr1 (84-171)||(5959010-5959100)
chr1 (82-175)||(9474882-9474978)
chr1 (78-171)||(41608503-41608599)
chr1 (129-175)||(44548382-44548428)
chr1 (129-175)||(50630506-50630552)
chr1 (84-175)||(38595154-38595248)
chr1 (129-175)||(43180-43226)
chr1 (129-175)||(8346394-8346440)
chr1 (129-175)||(27564741-27564787)
chr1 (129-175)||(44454027-44454073)
chr1 (129-175)||(51898689-51898735)
chr1 (125-174)||(11152385-11152434)
chr1 (129-177)||(13414809-13414857)
chr1 (83-171)||(47748442-47748532)
chr1 (129-175)||(37649246-37649292)
chr1 (129-175)||(41758853-41758899)
chr1 (129-175)||(47452326-47452372)
chr1 (133-177)||(45044564-45044608)
[»] chr2 (29 HSPs)
chr2 (84-177)||(26891508-26891604)
chr2 (101-177)||(3439996-3440075)
chr2 (129-177)||(3737991-3738039)
chr2 (83-171)||(43490120-43490211)
chr2 (84-171)||(38732354-38732444)
chr2 (101-175)||(28863472-28863549)
chr2 (129-175)||(10249388-10249434)
chr2 (129-175)||(13438391-13438437)
chr2 (129-175)||(32505654-32505700)
chr2 (81-177)||(17820008-17820107)
chr2 (83-175)||(40613908-40614003)
chr2 (84-175)||(9058480-9058574)
chr2 (84-175)||(33436106-33436200)
chr2 (80-175)||(40701474-40701572)
chr2 (84-171)||(45097745-45097835)
chr2 (101-175)||(19930826-19930903)
chr2 (84-164)||(38882831-38882913)
chr2 (102-171)||(2997497-2997569)
chr2 (129-175)||(7465741-7465787)
chr2 (129-175)||(17473068-17473114)
chr2 (125-175)||(27864748-27864798)
chr2 (78-175)||(28381661-28381761)
chr2 (131-171)||(3034993-3035033)
chr2 (131-175)||(20700865-20700909)
chr2 (125-175)||(4060729-4060779)
chr2 (129-175)||(5574494-5574540)
chr2 (129-175)||(30915511-30915557)
chr2 (129-175)||(42257241-42257287)
chr2 (129-173)||(36168884-36168928)
[»] scaffold0316 (1 HSPs)
scaffold0316 (125-177)||(17098-17150)
[»] chr4 (28 HSPs)
chr4 (84-171)||(47986208-47986298)
chr4 (75-175)||(11511468-11511571)
chr4 (84-175)||(41236347-41236441)
chr4 (84-175)||(42044373-42044467)
chr4 (82-175)||(6034042-6034138)
chr4 (84-171)||(19670726-19670816)
chr4 (129-175)||(48183055-48183101)
chr4 (129-175)||(50052434-50052480)
chr4 (84-154)||(44536773-44536845)
chr4 (84-175)||(29239886-29239980)
chr4 (84-171)||(50813902-50813992)
chr4 (80-175)||(54473539-54473637)
chr4 (132-175)||(29234251-29234294)
chr4 (124-175)||(41823925-41823976)
chr4 (129-175)||(480453-480499)
chr4 (102-171)||(17983753-17983825)
chr4 (129-174)||(50526178-50526223)
chr4 (129-177)||(24995111-24995159)
chr4 (84-151)||(29547989-29548059)
chr4 (84-171)||(32766958-32767048)
chr4 (124-175)||(48647732-48647783)
chr4 (129-175)||(3481702-3481748)
chr4 (83-151)||(18924525-18924596)
chr4 (130-175)||(28480274-28480319)
chr4 (130-175)||(28481149-28481194)
chr4 (130-175)||(28482024-28482069)
chr4 (107-175)||(29977908-29977979)
chr4 (125-154)||(56300192-56300221)
[»] chr6 (14 HSPs)
chr6 (81-171)||(15508034-15508127)
chr6 (84-171)||(15990052-15990142)
chr6 (84-171)||(30341370-30341460)
chr6 (84-175)||(31976248-31976342)
chr6 (101-175)||(32869695-32869772)
chr6 (129-175)||(17598602-17598648)
chr6 (101-175)||(22880664-22880741)
chr6 (129-175)||(11427666-11427712)
chr6 (135-177)||(30870068-30870110)
chr6 (78-167)||(31109414-31109506)
chr6 (129-175)||(23128133-23128179)
chr6 (130-175)||(6209471-6209516)
chr6 (83-175)||(31953036-31953131)
chr6 (89-175)||(28536494-28536581)
[»] chr8 (24 HSPs)
chr8 (119-177)||(15258933-15258991)
chr8 (84-171)||(16383377-16383467)
chr8 (77-175)||(40423949-40424050)
chr8 (84-151)||(32032725-32032794)
chr8 (83-175)||(504127-504222)
chr8 (84-171)||(24307803-24307893)
chr8 (84-171)||(34307216-34307306)
chr8 (101-175)||(14547939-14548016)
chr8 (83-177)||(38229428-38229524)
chr8 (129-175)||(9122233-9122279)
chr8 (129-175)||(12831095-12831141)
chr8 (129-175)||(15197381-15197427)
chr8 (129-175)||(8841438-8841484)
chr8 (129-175)||(10284637-10284683)
chr8 (129-175)||(23122603-23122649)
chr8 (129-175)||(37038527-37038573)
chr8 (84-173)||(44507095-44507187)
chr8 (84-164)||(14055609-14055692)
chr8 (84-171)||(16056411-16056501)
chr8 (129-175)||(5957878-5957924)
chr8 (129-175)||(15048188-15048234)
chr8 (129-175)||(34012302-34012348)
chr8 (129-175)||(43414587-43414633)
chr8 (130-170)||(17443874-17443914)
[»] chr7 (29 HSPs)
chr7 (84-171)||(38044197-38044287)
chr7 (84-177)||(36208173-36208269)
chr7 (84-175)||(7389389-7389483)
chr7 (84-171)||(22343361-22343451)
chr7 (84-175)||(38837217-38837311)
chr7 (84-171)||(41915741-41915831)
chr7 (124-175)||(32951499-32951550)
chr7 (84-177)||(12310906-12311000)
chr7 (129-175)||(38267088-38267134)
chr7 (84-176)||(46374807-46374902)
chr7 (84-171)||(7727906-7727996)
chr7 (79-170)||(32564437-32564531)
chr7 (84-175)||(36361919-36362013)
chr7 (84-170)||(40846124-40846213)
chr7 (129-175)||(3784043-3784089)
chr7 (83-171)||(8238211-8238303)
chr7 (125-175)||(16374830-16374880)
chr7 (129-175)||(19329890-19329936)
chr7 (129-175)||(36362074-36362120)
chr7 (83-175)||(35137532-35137627)
chr7 (135-175)||(8080389-8080429)
chr7 (129-177)||(27744313-27744361)
chr7 (124-175)||(3694410-3694461)
chr7 (129-163)||(2318261-2318295)
chr7 (129-175)||(3434610-3434656)
chr7 (129-175)||(4999520-4999566)
chr7 (129-175)||(19436193-19436239)
chr7 (129-175)||(40957755-40957801)
chr7 (131-173)||(41423732-41423774)
[»] scaffold0321 (1 HSPs)
scaffold0321 (84-175)||(10115-10209)
[»] scaffold1268 (1 HSPs)
scaffold1268 (124-175)||(935-986)
[»] scaffold1267 (1 HSPs)
scaffold1267 (124-175)||(935-986)
[»] scaffold0018 (1 HSPs)
scaffold0018 (101-170)||(152515-152587)


Alignment Details
Target: chr5 (Bit Score: 58; Significance: 1e-24; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 969859 - 969924
Alignment:
Q  18 cgttggtcttgggagctttgattcattgctcaatgctcatgaccttcggttttcctttaatttttt 83  Q
    |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  969859 cgttggtcttgggagctttgattcattgctcagtgctcacgaccttcggttttcctttaatttttt 969924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 83 - 175
Target Start/End: Original strand, 40145406 - 40145501
Alignment:
Q  83 tgagttatgatagataagcacccttaggtggcaataccc---tgaacatccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcaca 175  Q
    ||||| |||||| |||  ||||||||||||||||||| |   | ||||||||||||||||||||||| || |||||||||||||||||||||||||    
T  40145406 tgagtaatgatacatagacacccttaggtggcaatacaccctttaacatccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcaca 40145501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 84 - 171
Target Start/End: Complemental strand, 3921365 - 3921275
Alignment:
Q  84 gagttatgatagataagcacccttaggtggcaatac---cctgaacatccacacaaaaatctgacatgtggtcacgtggaccccgcacaag 171  Q
    ||||||||||| |||| |||||||||||||||||||   |||  ||| ||||||||||||||||||||||| ||  |||||||||||||||    
T  3921365 gagttatgatacataaacacccttaggtggcaatacaccccttgacacccacacaaaaatctgacatgtggccatatggaccccgcacaag 3921275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 84 - 171
Target Start/End: Complemental strand, 2252268 - 2252178
Alignment:
Q  84 gagttatgatagataagcacccttaggtggcaatac---cctgaacatccacacaaaaatctgacatgtggtcacgtggaccccgcacaag 171  Q
    ||||||||||| |||| || ||||||||||||||||   |||  ||| ||||||||||||||||||||||| ||  |||||||||||||||    
T  2252268 gagttatgatacataaacatccttaggtggcaatacaccccttgacacccacacaaaaatctgacatgtggccatatggaccccgcacaag 2252178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 129 - 177
Target Start/End: Original strand, 21370052 - 21370100
Alignment:
Q  129 ccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcacatt 177  Q
    |||| ||||||||||||||||||||||||||||||||||||| ||||||    
T  21370052 ccactcaaaaatctgacatgtggtcacgtggaccccgcacaaacacatt 21370100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 101 - 175
Target Start/End: Complemental strand, 18520967 - 18520890
Alignment:
Q  101 cacccttaggtggcaataccc---tgaacatccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcaca 175  Q
    ||||||||||||||||||| |   |  ||| |||||||||||||||||| || |||||||||||||||||||||||||    
T  18520967 cacccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcaca 18520890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 129 - 175
Target Start/End: Original strand, 13811700 - 13811746
Alignment:
Q  129 ccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcaca 175  Q
    |||||||||||||||||| || |||||||||||||||||||||||||    
T  13811700 ccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcaca 13811746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 127 - 173
Target Start/End: Original strand, 31132390 - 31132436
Alignment:
Q  127 atccacacaaaaatctgacatgtggtcacgtggaccccgcacaagca 173  Q
    |||||||||||||||||||| || |||||||||||||||||||||||    
T  31132390 atccacacaaaaatctgacaagtagtcacgtggaccccgcacaagca 31132436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 83 - 175
Target Start/End: Original strand, 28177774 - 28177869
Alignment:
Q  83 tgagttatgatagataagcacccttaggtggcaataccc---tgaacatccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcaca 175  Q
    |||||||||||| |||  || |||||||||||||||| |   |  ||| |||||||||||||||||| |||||||| |||||||||||||| ||||    
T  28177774 tgagttatgatacatagacatccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtggtcacatggaccccgcacaaacaca 28177869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 129 - 177
Target Start/End: Original strand, 6679746 - 6679794
Alignment:
Q  129 ccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcacatt 177  Q
    |||||||||||||||||| |||||||| |||||||||||||| ||||||    
T  6679746 ccacacaaaaatctgacacgtggtcacatggaccccgcacaaacacatt 6679794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 84 - 175
Target Start/End: Original strand, 31008988 - 31009082
Alignment:
Q  84 gagttatgatagataagcacccttaggtggcaatac---cctgaacatccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcaca 175  Q
    ||||||||||| |||| || ||||||||| ||||||   | |  ||| |||||||||||||||||| || |||||||||| ||||||||||||||    
T  31008988 gagttatgatacataaacatccttaggtgacaatacattcttccacacccacacaaaaatctgacacgtagtcacgtggatcccgcacaagcaca 31009082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 129 - 175
Target Start/End: Original strand, 2740322 - 2740368
Alignment:
Q  129 ccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcaca 175  Q
    |||||||||||||||||| || |||||||||| ||||||||||||||    
T  2740322 ccacacaaaaatctgacacgtagtcacgtggatcccgcacaagcaca 2740368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 129 - 175
Target Start/End: Complemental strand, 36732994 - 36732948
Alignment:
Q  129 ccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcaca 175  Q
    ||||||||||||||||||  | |||||||||||||||||||||||||    
T  36732994 ccacacaaaaatctgacacatagtcacgtggaccccgcacaagcaca 36732948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 129 - 175
Target Start/End: Complemental strand, 42414354 - 42414308
Alignment:
Q  129 ccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcaca 175  Q
    |||||||||||||||||| || |||| ||||||||||||||||||||    
T  42414354 ccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcaca 42414308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 167
Target Start/End: Complemental strand, 39688997 - 39688911
Alignment:
Q  84 gagttatgatagataagcacccttaggtggcaata---ccctgaacatccacacaaaaatctgacatgtggtcacgtggaccccgca 167  Q
    ||||||||||| |||| |||||||| |||||||||   ||||  ||| |||||||||||||||| |||||||||  || ||||||||    
T  39688997 gagttatgatacataaacacccttaagtggcaatacatcccttgacacccacacaaaaatctgatatgtggtcatatgaaccccgca 39688911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 175
Target Start/End: Original strand, 14831862 - 14831908
Alignment:
Q  129 ccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcaca 175  Q
    ||||| |||||||||||| || |||||||||| ||||||||||||||    
T  14831862 ccacataaaaatctgacacgtagtcacgtggatcccgcacaagcaca 14831908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 175
Target Start/End: Complemental strand, 15409662 - 15409616
Alignment:
Q  129 ccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcaca 175  Q
    |||||||||||||||||| || | ||| |||||||||||||||||||    
T  15409662 ccacacaaaaatctgacacgtagccacatggaccccgcacaagcaca 15409616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 175
Target Start/End: Complemental strand, 33149690 - 33149644
Alignment:
Q  129 ccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcaca 175  Q
    |||||||||||| ||||| || |||||||||| ||||||||||||||    
T  33149690 ccacacaaaaatttgacacgtagtcacgtggatcccgcacaagcaca 33149644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 83 - 175
Target Start/End: Original strand, 26720515 - 26720610
Alignment:
Q  83 tgagttatgatagataagcacccttaggtggcaataccc---tgaacatccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcaca 175  Q
    |||||||||||| |||  || |||||||||||||||| |   | |||| | ||| |||||||||||| |||| ||| |||| ||||||||||||||    
T  26720515 tgagttatgatacatagacatccttaggtggcaatacaccctttaacacctacaaaaaaatctgacacgtggccacatggatcccgcacaagcaca 26720610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 83 - 175
Target Start/End: Original strand, 26990264 - 26990359
Alignment:
Q  83 tgagttatgatagataagcacccttaggtggcaataccc---tgaacatccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcaca 175  Q
    |||||||||||| |||  || |||||||||||||||| |   | |||| | ||| |||||||||||| |||| ||| |||| ||||||||||||||    
T  26990264 tgagttatgatacatagacatccttaggtggcaatacaccctttaacacctacaaaaaaatctgacacgtggccacatggatcccgcacaagcaca 26990359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 135 - 172
Target Start/End: Complemental strand, 41470462 - 41470425
Alignment:
Q  135 aaaaatctgacatgtggtcacgtggaccccgcacaagc 172  Q
    |||||||||||| || ||||||||||||||||||||||    
T  41470462 aaaaatctgacacgtagtcacgtggaccccgcacaagc 41470425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 164
Target Start/End: Complemental strand, 39557574 - 39557534
Alignment:
Q  124 aacatccacacaaaaatctgacatgtggtcacgtggacccc 164  Q
    ||||||||||||||||||||||| ||| |||| ||||||||    
T  39557574 aacatccacacaaaaatctgacacgtgatcacatggacccc 39557534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 3e-22; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 101 - 177
Target Start/End: Original strand, 26754712 - 26754791
Alignment:
Q  101 cacccttaggtggcaataccc---tgaacatccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcacatt 177  Q
    ||||||||||||||||||| |   || ||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  26754712 cacccttaggtggcaatacacccttggacatccacacaaaaatctgacatgtggtcacatggaccccgcacaagcacatt 26754791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 84 - 177
Target Start/End: Original strand, 11907371 - 11907467
Alignment:
Q  84 gagttatgatagataagcacccttaggtggcaatac---cctgaacatccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcacatt 177  Q
    ||||||||||| |||  |||||||||||| ||||||   ||||||||  |||||||||||||||||||||||||  |||||||||||||||||||||    
T  11907371 gagttatgatacatagacacccttaggtgacaatacacacctgaacactcacacaaaaatctgacatgtggtcatatggaccccgcacaagcacatt 11907467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 84 - 177
Target Start/End: Complemental strand, 48375806 - 48375710
Alignment:
Q  84 gagttatgatagataagcacccttaggtggcaatac---cctgaacatccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcacatt 177  Q
    ||||||||||  |||  |||||||||||| ||||||   |||||| ||||| ||||||||||||| ||||||||| |||||||||||||||||||||    
T  48375806 gagttatgattcatagacacccttaggtgacaatacacccctgaaaatccatacaaaaatctgacgtgtggtcacatggaccccgcacaagcacatt 48375710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 83 - 175
Target Start/End: Complemental strand, 26141633 - 26141538
Alignment:
Q  83 tgagttatgatagataagcacccttaggtggcaataccc---tgaacatccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcaca 175  Q
    |||||||||||| |||  || |||||||||||||||| |   | |||| |||||||||||||||||| |||||||| |||||||| ||||||||||    
T  26141633 tgagttatgatacatagacatccttaggtggcaatacaccctttaacacccacacaaaaatctgacacgtggtcacatggaccccacacaagcaca 26141538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 83 - 175
Target Start/End: Original strand, 53982010 - 53982105
Alignment:
Q  83 tgagttatgatagataagcacccttaggtggcaataccc---tgaacatccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcaca 175  Q
    ||||| |||||| |||  ||||||||||||||||||| |   |  ||| |||||||||||||||||| || |||||||||||||||||||||||||    
T  53982010 tgagtaatgatacatagacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcaca 53982105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 82 - 171
Target Start/End: Complemental strand, 45058654 - 45058563
Alignment:
Q  82 ttgagttatgatagataagcacccttaggtggcaat--accctgaacatccacacaaaaatctgacatgtggtcacgtggaccccgcacaag 171  Q
    ||||||||||||| |||| |||||||||||||||||  |||||  ||| ||||| ||||||||||||||||  ||  |||||||||||||||    
T  45058654 ttgagttatgatacataaacacccttaggtggcaatacacccttgacacccacataaaaatctgacatgtgaccatatggaccccgcacaag 45058563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 129 - 175
Target Start/End: Original strand, 33644248 - 33644294
Alignment:
Q  129 ccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcaca 175  Q
    |||||||||||||||||| || |||||||||||||||||||||||||    
T  33644248 ccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcaca 33644294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 84 - 175
Target Start/End: Original strand, 8076393 - 8076487
Alignment:
Q  84 gagttatgatagataagcacccttaggtggcaataccc---tgaacatccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcaca 175  Q
    |||| |||||| |||| ||||||||||||||| ||| |   |  ||| |||||||||||||| ||| || |||||||||||||||||||||||||    
T  8076393 gagtaatgatacataaacacccttaggtggcagtacaccctttgacacccacacaaaaatctaacacgtagtcacgtggaccccgcacaagcaca 8076487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 84 - 175
Target Start/End: Original strand, 17470405 - 17470499
Alignment:
Q  84 gagttatgatagataagcacccttaggtggcaataccc---tgaacatccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcaca 175  Q
    |||| |||||| |||  |||| |||||||||||||| |   | |||| |||||||||||||||||| || |||||||||||||| ||||||||||    
T  17470405 gagtaatgatacatagacacctttaggtggcaatacaccttttaacacccacacaaaaatctgacacgtagtcacgtggaccccacacaagcaca 17470499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 88 - 175
Target Start/End: Original strand, 52629304 - 52629394
Alignment:
Q  88 tatgatagataagcacccttaggtggcaataccc---tgaacatccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcaca 175  Q
    ||||||| |||  ||||||||||||||||||| |   |  ||| |||||||||||||||||| || ||||||||||||||| |||||||||    
T  52629304 tatgatacatagacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgtacaagcaca 52629394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 78 - 175
Target Start/End: Complemental strand, 13898161 - 13898061
Alignment:
Q  78 ttttttgagttatgatagataagcacccttaggtggcaata---ccctgaacatccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcac 174  Q
    |||||| ||| ||||||||||| || |||||||||||||||   ||||  ||| ||||| |||||||||||| ||| ||| ||||||| | |||||||||    
T  13898161 tttttttagtaatgatagataaacatccttaggtggcaatacaccccttgacacccacataaaaatctgacacgtgttcatgtggacctcacacaagcac 13898062  T
Q  175 a 175  Q
    |    
T  13898061 a 13898061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 129 - 175
Target Start/End: Complemental strand, 27714943 - 27714897
Alignment:
Q  129 ccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcaca 175  Q
    |||||||||||||||||| || |||| ||||||||||||||||||||    
T  27714943 ccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcaca 27714897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 129 - 175
Target Start/End: Original strand, 31456737 - 31456783
Alignment:
Q  129 ccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcaca 175  Q
    |||||||||||||||||| || |||| ||||||||||||||||||||    
T  31456737 ccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcaca 31456783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 175
Target Start/End: Complemental strand, 20765019 - 20764921
Alignment:
Q  80 ttttgagttatgatagataagcacccttaggtggcaataccctg---aacatccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcaca 175  Q
    ||||||||||||| | |||  || |||||||||| ||||| ||    |||| |||||||||||||||||| |||| ||| ||||||||| |||||||||    
T  20765019 ttttgagttatgagacatagacatccttaggtggtaatacactctttaacacccacacaaaaatctgacacgtggccacatggaccccgtacaagcaca 20764921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 175
Target Start/End: Original strand, 49607414 - 49607508
Alignment:
Q  84 gagttatgatagataagcacccttaggtggcaataccc---tgaacatccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcaca 175  Q
    |||| |||||| |||  ||||||||||||||||||| |   |  ||| |||||||||||||||||| || |||||||||| ||| ||||||||||    
T  49607414 gagtaatgatacatagacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggatcccacacaagcaca 49607508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 175
Target Start/End: Complemental strand, 54868995 - 54868901
Alignment:
Q  84 gagttatgatagataagcacccttaggtggcaataccc---tgaacatccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcaca 175  Q
    |||| |||||| |||  ||||||||||||||||||| |   |  ||| |||||||||||||||||| || || ||||||||||||||||| ||||    
T  54868995 gagtaatgatacatagacacccttaggtggcaatacaccttttgacacccacacaaaaatctgacacgtagttacgtggaccccgcacaatcaca 54868901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 124 - 175
Target Start/End: Complemental strand, 51419417 - 51419366
Alignment:
Q  124 aacatccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcaca 175  Q
    |||| |||||||||||||||||| |||| ||| | |||||||||||||||||    
T  51419417 aacacccacacaaaaatctgacacgtggccacatagaccccgcacaagcaca 51419366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 175
Target Start/End: Complemental strand, 11347978 - 11347928
Alignment:
Q  125 acatccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcaca 175  Q
    |||||||||||||||||||||| |||| ||| ||||||| ||| |||||||    
T  11347978 acatccacacaaaaatctgacacgtggccacatggaccctgcataagcaca 11347928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 171
Target Start/End: Complemental strand, 36331381 - 36331339
Alignment:
Q  129 ccacacaaaaatctgacatgtggtcacgtggaccccgcacaag 171  Q
    ||||||||||||||||||||||| ||  |||||||||||||||    
T  36331381 ccacacaaaaatctgacatgtggccatatggaccccgcacaag 36331339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 177
Target Start/End: Complemental strand, 1758508 - 1758460
Alignment:
Q  129 ccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcacatt 177  Q
    ||||||||||||||||||| |||| |||||||| || ||||| ||||||    
T  1758508 ccacacaaaaatctgacatatggttacgtggactccacacaaacacatt 1758460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 175
Target Start/End: Complemental strand, 14623919 - 14623845
Alignment:
Q  104 ccttaggtggcaatac---cctgaacatccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcaca 175  Q
    ||||||||||||||||   |||  ||| ||||| |||||||||||||||| ||| ||||||| | ||||||||||    
T  14623919 ccttaggtggcaatacaccccttgacacccacataaaaatctgacatgtgttcatgtggacctcacacaagcaca 14623845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 177
Target Start/End: Complemental strand, 30801785 - 30801737
Alignment:
Q  129 ccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcacatt 177  Q
    |||||||||||| |||||||| ||||  |||||||| ||||||||||||    
T  30801785 ccacacaaaaatatgacatgtagtcatatggaccccacacaagcacatt 30801737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 175
Target Start/End: Original strand, 47531865 - 47531959
Alignment:
Q  84 gagttatgatagataagcacccttaggtggcaataccc---tgaacatccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcaca 175  Q
    ||||||||||| |||  || |||||| ||||||||| |   | ||||||||||||| ||||||||| |||| ||  || ||||||||||||||||    
T  47531865 gagttatgatacatagacatccttagatggcaatacaccttttaacatccacacaagaatctgacacgtggccatatgaaccccgcacaagcaca 47531959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 5e-21; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 118 - 177
Target Start/End: Original strand, 48489337 - 48489396
Alignment:
Q  118 accctgaacatccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcacatt 177  Q
    |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  48489337 accctggacatccacacaaaaatctgacatgtggtcacgtggatcccgcacaagcacatt 48489396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 78 - 175
Target Start/End: Complemental strand, 48716388 - 48716288
Alignment:
Q  78 ttttttgagttatgatagataagcacccttaggtggcaataccc---tgaacatccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcac 174  Q
    |||||||||| |||||| |||  ||||||||||||||||||| |   |  |||||||||||||||||||||| || ||||||||||||||||||||||||    
T  48716388 ttttttgagtaatgatacatagacacccttaggtggcaatacaccatttgacatccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcac 48716289  T
Q  175 a 175  Q
    |    
T  48716288 a 48716288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 84 - 175
Target Start/End: Complemental strand, 38632421 - 38632327
Alignment:
Q  84 gagttatgatagataagcacccttaggtggcaataccc---tgaacatccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcaca 175  Q
    |||| |||||| |||  ||||||||||||||||||| |   | ||||||||||||||||||||||| || |||||||||||||||||||||||||    
T  38632421 gagtaatgatacatagacacccttaggtggcaatacaccttttaacatccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcaca 38632327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 83 - 177
Target Start/End: Original strand, 6260869 - 6260966
Alignment:
Q  83 tgagttatgatagataagcacccttaggtggcaatac---cctgaacatccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcacatt 177  Q
    ||||||||||||||||   | |||||||||| |||||   |||||||| ||||| |||||||| |||||||||||||||||||||||| |||||||||    
T  6260869 tgagttatgatagatagatatccttaggtggtaatacacccctgaacacccacataaaaatctaacatgtggtcacgtggaccccgcataagcacatt 6260966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 81 - 171
Target Start/End: Complemental strand, 50591103 - 50591010
Alignment:
Q  81 tttgagttatgatagataagcacccttaggtggcaatac---cctgaacatccacacaaaaatctgacatgtggtcacgtggaccccgcacaag 171  Q
    |||||||||||||| |||| |||||||||||||||||||   |||  ||| ||||||||||||||||||||||| ||  |||||||||||||||    
T  50591103 tttgagttatgatacataaacacccttaggtggcaatacaccccttgacacccacacaaaaatctgacatgtggccatatggaccccgcacaag 50591010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 84 - 175
Target Start/End: Original strand, 32813247 - 32813341
Alignment:
Q  84 gagttatgatagataagcacccttaggtggcaataccc---tgaacatccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcaca 175  Q
    ||||||||||| |||  || |||||||||||||||| |   | |||| |||||||||||||||||| |||||||| |||||||||||||||||||    
T  32813247 gagttatgatacatagacatccttaggtggcaatacaccctttaacacccacacaaaaatctgacacgtggtcacatggaccccgcacaagcaca 32813341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 84 - 175
Target Start/End: Original strand, 2581915 - 2582009
Alignment:
Q  84 gagttatgatagataagcacccttaggtggcaataccc---tgaacatccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcaca 175  Q
    |||| |||||| |||  ||||||||||||||||||| |   |  ||| |||||||||||||||||| || |||||||||||||||||||||||||    
T  2581915 gagtaatgatacatagacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcaca 2582009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 84 - 175
Target Start/End: Original strand, 3000319 - 3000413
Alignment:
Q  84 gagttatgatagataagcacccttaggtggcaataccc---tgaacatccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcaca 175  Q
    |||| |||||| |||| ||||||||||||||||||| |   |  ||| |||||||||||||||||| || ||||||||||||||| |||||||||    
T  3000319 gagtaatgatacataaacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgtacaagcaca 3000413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 84 - 171
Target Start/End: Complemental strand, 5959100 - 5959010
Alignment:
Q  84 gagttatgatagataagcacccttaggtggcaataccc---tgaacatccacacaaaaatctgacatgtggtcacgtggaccccgcacaag 171  Q
    ||||||||||| |||| |||||||| |||||||||| |   |  ||| ||||||||||||||||||||||||||  |||||||||||||||    
T  5959100 gagttatgatacataaacacccttaagtggcaatacacctcttgacacccacacaaaaatctgacatgtggtcatatggaccccgcacaag 5959010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 82 - 175
Target Start/End: Complemental strand, 9474978 - 9474882
Alignment:
Q  82 ttgagttatgatagataagcacccttaggtggcaataccc---tgaacatccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcaca 175  Q
    |||||| |||||| |||  ||||||||||||||||||| |   |  ||| |||||||||||||||||| || |||||||||||||||||||| ||||    
T  9474978 ttgagtaatgatacatagacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaaacaca 9474882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 78 - 171
Target Start/End: Complemental strand, 41608599 - 41608503
Alignment:
Q  78 ttttttgagttatgatagataagcacccttaggtggcaata---ccctgaacatccacacaaaaatctgacatgtggtcacgtggaccccgcacaag 171  Q
    ||||||||||||||||| |||| || |||||||||||||||   ||||  |||  |||||||||||||||||||||| ||  ||||||||| |||||    
T  41608599 ttttttgagttatgatacataaacatccttaggtggcaatacaccccttgacactcacacaaaaatctgacatgtggccatatggaccccgtacaag 41608503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 129 - 175
Target Start/End: Complemental strand, 44548428 - 44548382
Alignment:
Q  129 ccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcaca 175  Q
    |||||||||||||||||| || |||||||||||||||||||||||||    
T  44548428 ccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcaca 44548382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 129 - 175
Target Start/End: Original strand, 50630506 - 50630552
Alignment:
Q  129 ccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcaca 175  Q
    |||||||||||||||||| || |||||||||||||||||||||||||    
T  50630506 ccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcaca 50630552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 84 - 175
Target Start/End: Original strand, 38595154 - 38595248
Alignment:
Q  84 gagttatgatagataagcacccttaggtggcaataccc---tgaacatccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcaca 175  Q
    |||| |||||| |||| |||| |||||||||||||| |   |  ||| |||||||||||||||||| || ||||||||||||||| |||||||||    
T  38595154 gagtaatgatacataaacacctttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgtacaagcaca 38595248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 129 - 175
Target Start/End: Original strand, 43180 - 43226
Alignment:
Q  129 ccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcaca 175  Q
    |||||||||||||||||| || ||||||||||| |||||||||||||    
T  43180 ccacacaaaaatctgacacgtagtcacgtggactccgcacaagcaca 43226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 129 - 175
Target Start/End: Complemental strand, 8346440 - 8346394
Alignment:
Q  129 ccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcaca 175  Q
    |||||||||||||||||| || ||||||||||||| |||||||||||    
T  8346440 ccacacaaaaatctgacacgtagtcacgtggaccctgcacaagcaca 8346394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 129 - 175
Target Start/End: Complemental strand, 27564787 - 27564741
Alignment:
Q  129 ccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcaca 175  Q
    |||||||||||||||||| ||  ||||||||||||||||||||||||    
T  27564787 ccacacaaaaatctgacacgtaatcacgtggaccccgcacaagcaca 27564741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 129 - 175
Target Start/End: Original strand, 44454027 - 44454073
Alignment:
Q  129 ccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcaca 175  Q
    |||||||||||||||||||||||| ||||||| ||| ||||||||||    
T  44454027 ccacacaaaaatctgacatgtggttacgtggatcccacacaagcaca 44454073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 129 - 175
Target Start/End: Complemental strand, 51898735 - 51898689
Alignment:
Q  129 ccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcaca 175  Q
    |||||||||||||||||| || |||||||||| ||||||||||||||    
T  51898735 ccacacaaaaatctgacacgtagtcacgtggatcccgcacaagcaca 51898689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 174
Target Start/End: Complemental strand, 11152434 - 11152385
Alignment:
Q  125 acatccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcac 174  Q
    |||||||||||||||||||||| || |||| || ||||||||||||||||    
T  11152434 acatccacacaaaaatctgacacgtagtcatgtagaccccgcacaagcac 11152385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 177
Target Start/End: Original strand, 13414809 - 13414857
Alignment:
Q  129 ccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcacatt 177  Q
    |||||||||||||| ||| || |||||||||||||| ||||||||||||    
T  13414809 ccacacaaaaatctaacacgtagtcacgtggaccccacacaagcacatt 13414857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 171
Target Start/End: Original strand, 47748442 - 47748532
Alignment:
Q  83 tgagttatgatagataagcacccttaggtggcaat--accctgaacatccacacaaaaatctgacatgtggtcacgtggaccccgcacaag 171  Q
    |||||||||||| ||||  ||||||||||||||||  |||||  ||| ||| | ||||||||||||||||| ||  |||| ||||||||||    
T  47748442 tgagttatgatacataaatacccttaggtggcaatacacccttgacacccatataaaaatctgacatgtggccatatggatcccgcacaag 47748532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 175
Target Start/End: Original strand, 37649246 - 37649292
Alignment:
Q  129 ccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcaca 175  Q
    |||||||||||||||||| ||||||||||| |  |||||||||||||    
T  37649246 ccacacaaaaatctgacacgtggtcacgtgaattccgcacaagcaca 37649292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 175
Target Start/End: Original strand, 41758853 - 41758899
Alignment:
Q  129 ccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcaca 175  Q
    |||||||||||||||||| || ||||| |||||||||||||| ||||    
T  41758853 ccacacaaaaatctgacacgtagtcacatggaccccgcacaaacaca 41758899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 175
Target Start/End: Complemental strand, 47452372 - 47452326
Alignment:
Q  129 ccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcaca 175  Q
    |||||||||||||| ||| || |||||||||| ||||||||||||||    
T  47452372 ccacacaaaaatctaacacgtagtcacgtggatcccgcacaagcaca 47452326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 177
Target Start/End: Complemental strand, 45044608 - 45044564
Alignment:
Q  133 acaaaaatctgacatgtggtcacgtggaccccgcacaagcacatt 177  Q
    ||||||||||||||||| | ||| |||||||||||||| ||||||    
T  45044608 acaaaaatctgacatgtagccacatggaccccgcacaaacacatt 45044564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 84 - 177
Target Start/End: Complemental strand, 26891604 - 26891508
Alignment:
Q  84 gagttatgatagataagcacccttaggtggcaatac---cctgaacatccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcacatt 177  Q
    ||||||||||| |||  |||||||||||||||||||   |||  ||| |||||||||||||||||||||||||||||||||| || |||||||||||    
T  26891604 gagttatgatacatagccacccttaggtggcaatacacccctagacacccacacaaaaatctgacatgtggtcacgtggacctcgaacaagcacatt 26891508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 101 - 177
Target Start/End: Original strand, 3439996 - 3440075
Alignment:
Q  101 cacccttaggtggcaatac---cctgaacatccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcacatt 177  Q
    |||||||||||||||||||   |||| ||| |||||||||||||| ||||||| | ||||||||||||||||||||||||    
T  3439996 cacccttaggtggcaatacactcctggacacccacacaaaaatctaacatgtgattacgtggaccccgcacaagcacatt 3440075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 129 - 177
Target Start/End: Original strand, 3737991 - 3738039
Alignment:
Q  129 ccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcacatt 177  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  3737991 ccacacaaaaatctgacatgtggtcatgtggaccccgcacaagcacatt 3738039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 83 - 171
Target Start/End: Original strand, 43490120 - 43490211
Alignment:
Q  83 tgagttatgatagataagcacccttaggtggcaatac---cctgaacatccacacaaaaatctgacatgtggtcacgtggaccccgcacaag 171  Q
    |||||||||||| |||| |||||||||||| ||||||   |||  ||| ||||||||||||||||||||||| ||  |||||||||||||||    
T  43490120 tgagttatgatacataaacacccttaggtgacaatacaccccttgacacccacacaaaaatctgacatgtggccatatggaccccgcacaag 43490211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 84 - 171
Target Start/End: Original strand, 38732354 - 38732444
Alignment:
Q  84 gagttatgatagataagcacccttaggtggcaatac---cctgaacatccacacaaaaatctgacatgtggtcacgtggaccccgcacaag 171  Q
    ||||||||||| |||| |||||||| ||| ||||||   |||  ||| ||||||||||||||||||||||||||  |||||||||||||||    
T  38732354 gagttatgatacataaacacccttatgtgacaatacatcccttgacacccacacaaaaatctgacatgtggtcatatggaccccgcacaag 38732444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 101 - 175
Target Start/End: Original strand, 28863472 - 28863549
Alignment:
Q  101 cacccttaggtggcaataccc---tgaacatccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcaca 175  Q
    ||||||||||||||||||| |   |  ||| |||||||||||||||||| || |||||||||||||||||||||||||    
T  28863472 cacccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcaca 28863549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 129 - 175
Target Start/End: Complemental strand, 10249434 - 10249388
Alignment:
Q  129 ccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcaca 175  Q
    |||||||||||||||||| || |||||||||||||||||||||||||    
T  10249434 ccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcaca 10249388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 129 - 175
Target Start/End: Original strand, 13438391 - 13438437
Alignment:
Q  129 ccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcaca 175  Q
    |||||||||||||||||| || |||||||||||||||||||||||||    
T  13438391 ccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcaca 13438437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 129 - 175
Target Start/End: Complemental strand, 32505700 - 32505654
Alignment:
Q  129 ccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcaca 175  Q
    |||||||||||||||||| || |||||||||||||||||||||||||    
T  32505700 ccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcaca 32505654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 81 - 177
Target Start/End: Complemental strand, 17820107 - 17820008
Alignment:
Q  81 tttgagttatgatagataagcacccttaggtggcaatac---cctgaacatccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcacatt 177  Q
    |||||||||||||| |||  || |  |||||||||||||   |||  ||| |||||||||||||||||||||||| ||||||||||| ||||| ||||||    
T  17820107 tttgagttatgatacatagacaactataggtggcaatacaccccttgacacccacacaaaaatctgacatgtggttacgtggaccccacacaaacacatt 17820008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 83 - 175
Target Start/End: Complemental strand, 40614003 - 40613908
Alignment:
Q  83 tgagttatgatagataagcacccttaggtggcaataccc---tgaacatccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcaca 175  Q
    |||||||||||| |||  || |||||||||||||||| |   |  ||| |||||||||||||||||| |||| ||| |||||||||||||||||||    
T  40614003 tgagttatgatacatagacatccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtggccacatggaccccgcacaagcaca 40613908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 84 - 175
Target Start/End: Original strand, 9058480 - 9058574
Alignment:
Q  84 gagttatgatagataagcacccttaggtggcaataccc---tgaacatccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcaca 175  Q
    |||| |||||| |||  ||||||||||||||||||| |   |  ||| |||||||||||||||||| || |||| ||||||||||||||||||||    
T  9058480 gagtaatgatacatagacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcaca 9058574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 84 - 175
Target Start/End: Complemental strand, 33436200 - 33436106
Alignment:
Q  84 gagttatgatagataagcacccttaggtggcaataccc---tgaacatccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcaca 175  Q
    |||| |||||| |||  ||||||||||||||||||| |   |  ||| |||||||||||||| ||| || |||||||||||||||||||||||||    
T  33436200 gagtaatgatacatagacacccttaggtggcaatacaccctttgacacccacacaaaaatctaacacgtagtcacgtggaccccgcacaagcaca 33436106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 80 - 175
Target Start/End: Original strand, 40701474 - 40701572
Alignment:
Q  80 ttttgagttatgatagataagcacccttaggtggcaataccc---tgaacatccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcaca 175  Q
    |||||||| |||||| |||  ||||||||||||||||||| |   |  ||| |||||||||||||||||| || || ||||||||||||||||| ||||    
T  40701474 ttttgagtaatgatacatagacacccttaggtggcaatacaccttttgacacccacacaaaaatctgacacgtagttacgtggaccccgcacaatcaca 40701572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 84 - 171
Target Start/End: Complemental strand, 45097835 - 45097745
Alignment:
Q  84 gagttatgatagataagcacccttaggtggcaatac---cctgaacatccacacaaaaatctgacatgtggtcacgtggaccccgcacaag 171  Q
    ||||||||||| |||| || ||||||||||||||||   |||  ||| ||| ||||||||||||||||||| ||  |||||||||||||||    
T  45097835 gagttatgatacataaacatccttaggtggcaatacatcccttgacacccatacaaaaatctgacatgtggccatatggaccccgcacaag 45097745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 101 - 175
Target Start/End: Complemental strand, 19930903 - 19930826
Alignment:
Q  101 cacccttaggtggcaataccc---tgaacatccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcaca 175  Q
    ||||||||||||||||||| |   |  |||||||||||||||||||||| || |||| ||||||||||||||| ||||    
T  19930903 cacccttaggtggcaatacaccctttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaaacaca 19930826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 164
Target Start/End: Complemental strand, 38882913 - 38882831
Alignment:
Q  84 gagttatgatagataagcacccttaggtggcaataccc--tgaacatccacacaaaaatctgacatgtggtcacgtggacccc 164  Q
    |||| |||||| |||  |||||||||||||||||| ||  |  |||||||||||||||||||||| || ||||||||||||||    
T  38882913 gagtaatgatacatagacacccttaggtggcaataaccctttgacatccacacaaaaatctgacacgtagtcacgtggacccc 38882831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 102 - 171
Target Start/End: Complemental strand, 2997569 - 2997497
Alignment:
Q  102 acccttaggtggcaatac---cctgaacatccacacaaaaatctgacatgtggtcacgtggaccccgcacaag 171  Q
    ||||||||||||||||||   |||  ||| ||||||||||||||||||||||| ||  |||||||||||||||    
T  2997569 acccttaggtggcaatacaccccttgacacccacacaaaaatctgacatgtggccatatggaccccgcacaag 2997497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 129 - 175
Target Start/End: Complemental strand, 7465787 - 7465741
Alignment:
Q  129 ccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcaca 175  Q
    |||||||||||||||||| || |||||||||||||| ||||||||||    
T  7465787 ccacacaaaaatctgacacgtagtcacgtggaccccacacaagcaca 7465741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 129 - 175
Target Start/End: Original strand, 17473068 - 17473114
Alignment:
Q  129 ccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcaca 175  Q
    |||||||||||||||||| || |||||||||| ||||||||||||||    
T  17473068 ccacacaaaaatctgacacgtagtcacgtggatcccgcacaagcaca 17473114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 125 - 175
Target Start/End: Original strand, 27864748 - 27864798
Alignment:
Q  125 acatccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcaca 175  Q
    |||||||||||||||||||||| ||  |||||||||||||||| |||||||    
T  27864748 acatccacacaaaaatctgacacgtaatcacgtggaccccgcaaaagcaca 27864798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 78 - 175
Target Start/End: Complemental strand, 28381761 - 28381661
Alignment:
Q  78 ttttttgagttatgatagataagcacccttaggtggcaataccc---tgaacatccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcac 174  Q
    |||| ||||| |||||| |||  ||||||||||||||||||| |   |  ||| |||||||||||||||||| || ||||| ||||| ||||||||||||    
T  28381761 ttttatgagtaatgatacatagacacccttaggtggcaatacacctttcgacacccacacaaaaatctgacacgtagtcacatggactccgcacaagcac 28381662  T
Q  175 a 175  Q
    |    
T  28381661 a 28381661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 171
Target Start/End: Complemental strand, 3035033 - 3034993
Alignment:
Q  131 acacaaaaatctgacatgtggtcacgtggaccccgcacaag 171  Q
    ||||||||||||||||||||||||  |||||||||||||||    
T  3035033 acacaaaaatctgacatgtggtcatatggaccccgcacaag 3034993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 175
Target Start/End: Original strand, 20700865 - 20700909
Alignment:
Q  131 acacaaaaatctgacatgtggtcacgtggaccccgcacaagcaca 175  Q
    |||||||||||||||| || ||||||||||||||||| |||||||    
T  20700865 acacaaaaatctgacacgtagtcacgtggaccccgcataagcaca 20700909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 175
Target Start/End: Original strand, 4060729 - 4060779
Alignment:
Q  125 acatccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcaca 175  Q
    |||||||||||||||||||||| || || ||||||| |||||| |||||||    
T  4060729 acatccacacaaaaatctgacacgtagttacgtggatcccgcataagcaca 4060779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 175
Target Start/End: Complemental strand, 5574540 - 5574494
Alignment:
Q  129 ccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcaca 175  Q
    ||||| |||||||||||| || |||||||||| ||||||||||||||    
T  5574540 ccacataaaaatctgacacgtagtcacgtggatcccgcacaagcaca 5574494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 175
Target Start/End: Original strand, 30915511 - 30915557
Alignment:
Q  129 ccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcaca 175  Q
    ||||| |||||||||||| || ||||||||||||||| |||||||||    
T  30915511 ccacataaaaatctgacacgtagtcacgtggaccccgtacaagcaca 30915557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 175
Target Start/End: Original strand, 42257241 - 42257287
Alignment:
Q  129 ccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcaca 175  Q
    ||||| |||||||||||| |||| ||| |||||||||||||||||||    
T  42257241 ccacataaaaatctgacacgtggccacatggaccccgcacaagcaca 42257287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 173
Target Start/End: Original strand, 36168884 - 36168928
Alignment:
Q  129 ccacacaaaaatctgacatgtggtcacgtggaccccgcacaagca 173  Q
    |||||||||||| ||||| |||| ||| |||||||||||||||||    
T  36168884 ccacacaaaaatttgacacgtggccacatggaccccgcacaagca 36168928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0316 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 125 - 177
Target Start/End: Original strand, 17098 - 17150
Alignment:
Q  125 acatccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcacatt 177  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  17098 acatccacacaaaaatctgacatgtggtcacatggaccccgcacaagcacatt 17150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 3e-19; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 84 - 171
Target Start/End: Original strand, 47986208 - 47986298
Alignment:
Q  84 gagttatgatagataagcacccttaggtggcaatac---cctgaacatccacacaaaaatctgacatgtggtcacgtggaccccgcacaag 171  Q
    ||||||||||| |||| |||||||||||||||||||   |||  ||||||||||||||||||||||||||| ||  |||||||||||||||    
T  47986208 gagttatgatacataaacacccttaggtggcaatacatcccttgacatccacacaaaaatctgacatgtggccatatggaccccgcacaag 47986298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 75 - 175
Target Start/End: Complemental strand, 11511571 - 11511468
Alignment:
Q  75 taattttttgagttatgatagataagcacccttaggtggcaataccc---tgaacatccacacaaaaatctgacatgtggtcacgtggaccccgcacaag 171  Q
    ||||||||||||| |||||| |||  ||||||||||||||||||| |   |  ||| ||||| |||||||||||| || |||||||||||||||||||||    
T  11511571 taattttttgagtaatgatacatagacacccttaggtggcaatacaccctttgacacccacataaaaatctgacacgtagtcacgtggaccccgcacaag 11511472  T
Q  172 caca 175  Q
    ||||    
T  11511471 caca 11511468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 84 - 175
Target Start/End: Original strand, 41236347 - 41236441
Alignment:
Q  84 gagttatgatagataagcacccttaggtggcaataccc---tgaacatccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcaca 175  Q
    |||| |||||| |||  ||||||||||||||||||| |   |  |||||||||||||||||||||| || |||||||||||||||||||||||||    
T  41236347 gagtaatgatacatagacacccttaggtggcaatacaccttttgacatccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcaca 41236441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 84 - 175
Target Start/End: Complemental strand, 42044467 - 42044373
Alignment:
Q  84 gagttatgatagataagcacccttaggtggcaatac---cctgaacatccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcaca 175  Q
    |||| |||||| |||  |||||||||||||||||||   | || ||| |||||||||||||||||| || |||||||||||||||||||||||||    
T  42044467 gagtaatgatacatagacacccttaggtggcaatacatccttgtacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcaca 42044373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 82 - 175
Target Start/End: Original strand, 6034042 - 6034138
Alignment:
Q  82 ttgagttatgatagataagcacccttaggtggcaataccc---tgaacatccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcaca 175  Q
    |||||| |||||| |||  ||||||||||||||||||| |   |  ||| ||||||||||||||||||||| |||||||||| ||||||||||||||    
T  6034042 ttgagtaatgatacatagacacccttaggtggcaatacaccctttgacacccacacaaaaatctgacatgtagtcacgtggatcccgcacaagcaca 6034138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 84 - 171
Target Start/End: Complemental strand, 19670816 - 19670726
Alignment:
Q  84 gagttatgatagataagcacccttaggtggcaatac---cctgaacatccacacaaaaatctgacatgtggtcacgtggaccccgcacaag 171  Q
    ||||||||||| |||| |||||||||||||||||||   |||  |||  |||||||||||||||||||||| ||  |||||||||||||||    
T  19670816 gagttatgatacataaacacccttaggtggcaatacaccccttgacactcacacaaaaatctgacatgtggccatatggaccccgcacaag 19670726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 129 - 175
Target Start/End: Complemental strand, 48183101 - 48183055
Alignment:
Q  129 ccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcaca 175  Q
    |||||||||||||||||| || |||||||||||||||||||||||||    
T  48183101 ccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcaca 48183055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 129 - 175
Target Start/End: Complemental strand, 50052480 - 50052434
Alignment:
Q  129 ccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcaca 175  Q
    |||||||||||||||||| || |||||||||||||||||||||||||    
T  50052480 ccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcaca 50052434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 84 - 154
Target Start/End: Complemental strand, 44536845 - 44536773
Alignment:
Q  84 gagttatgatagataagcacccttaggtggcaatac--cctgaacatccacacaaaaatctgacatgtggtca 154  Q
    ||||||||||| |||| |||  ||||||||||||||  |||  ||||||||||||||||||||||||||||||    
T  44536845 gagttatgatacataaacacttttaggtggcaatacacccttgacatccacacaaaaatctgacatgtggtca 44536773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 84 - 175
Target Start/End: Original strand, 29239886 - 29239980
Alignment:
Q  84 gagttatgatagataagcacccttaggtggcaataccc---tgaacatccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcaca 175  Q
    |||| |||||| |||  ||||||||||||||||||| |   |  |||||||||||||||||| ||| || |||||||||||||| ||||||||||    
T  29239886 gagtaatgatacatagacacccttaggtggcaatacaccatttgacatccacacaaaaatctaacacgtagtcacgtggaccccacacaagcaca 29239980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 84 - 171
Target Start/End: Complemental strand, 50813992 - 50813902
Alignment:
Q  84 gagttatgatagataagcacccttaggtggcaatac---cctgaacatccacacaaaaatctgacatgtggtcacgtggaccccgcacaag 171  Q
    ||||||||||| |||| ||| ||||||||| |||||   |||  ||| ||||||||||||||||||||||||||  || ||||||||||||    
T  50813992 gagttatgatacataaacactcttaggtggtaatacaccccttgacacccacacaaaaatctgacatgtggtcatatgaaccccgcacaag 50813902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 80 - 175
Target Start/End: Complemental strand, 54473637 - 54473539
Alignment:
Q  80 ttttgagttatgatagataagcacccttaggtggcaataccc---tgaacatccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcaca 175  Q
    |||||||| |||||| |||  |||||||||||| |||||| |   |  ||| |||||||||||||| ||| || |||||||||||||||||||||||||    
T  54473637 ttttgagtaatgatacatagacacccttaggtgacaatacaccatttgacacccacacaaaaatctaacacgtagtcacgtggaccccgcacaagcaca 54473539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 175
Target Start/End: Complemental strand, 29234294 - 29234251
Alignment:
Q  132 cacaaaaatctgacatgtggtcacgtggaccccgcacaagcaca 175  Q
    ||||||||||||||| || |||||||||||||||||||||||||    
T  29234294 cacaaaaatctgacacgtagtcacgtggaccccgcacaagcaca 29234251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 124 - 175
Target Start/End: Original strand, 41823925 - 41823976
Alignment:
Q  124 aacatccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcaca 175  Q
    |||| |||||||||||||||||| || ||||| |||||||||||||||||||    
T  41823925 aacacccacacaaaaatctgacacgtagtcacatggaccccgcacaagcaca 41823976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 129 - 175
Target Start/End: Complemental strand, 480499 - 480453
Alignment:
Q  129 ccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcaca 175  Q
    |||||||||||||||||| || ||||||||||||||| |||||||||    
T  480499 ccacacaaaaatctgacacgtagtcacgtggaccccgtacaagcaca 480453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 102 - 171
Target Start/End: Complemental strand, 17983825 - 17983753
Alignment:
Q  102 acccttaggtggcaatac---cctgaacatccacacaaaaatctgacatgtggtcacgtggaccccgcacaag 171  Q
    ||||||||||||||||||   |||  ||| ||||||||||||||||||||||| ||  |||||||||||||||    
T  17983825 acccttaggtggcaatacaccccttgacacccacacaaaaatctgacatgtggccatatggaccccgcacaag 17983753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 129 - 174
Target Start/End: Complemental strand, 50526223 - 50526178
Alignment:
Q  129 ccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcac 174  Q
    |||||||||||||||||| |||||||||||||  ||||||||||||    
T  50526223 ccacacaaaaatctgacacgtggtcacgtggattccgcacaagcac 50526178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 177
Target Start/End: Complemental strand, 24995159 - 24995111
Alignment:
Q  129 ccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcacatt 177  Q
    ||||| |||||| ||||| || |||||||||||||||||||||||||||    
T  24995159 ccacataaaaatttgacacgtagtcacgtggaccccgcacaagcacatt 24995111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 151
Target Start/End: Complemental strand, 29548059 - 29547989
Alignment:
Q  84 gagttatgatagataagcacccttaggtggcaata---ccctgaacatccacacaaaaatctgacatgtgg 151  Q
    ||||||||||| |||| || |||||||||||||||   ||||  ||| |||||||||||||||||||||||    
T  29548059 gagttatgatacataaacatccttaggtggcaatacatcccttgacacccacacaaaaatctgacatgtgg 29547989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 171
Target Start/End: Original strand, 32766958 - 32767048
Alignment:
Q  84 gagttatgatagataagcacccttaggtggcaata---ccctgaacatccacacaaaaatctgacatgtggtcacgtggaccccgcacaag 171  Q
    ||||||||||| |||| ||| ||||||||||||||   ||||  ||| ||| ||||||||||||||||||| ||  ||||||| |||||||    
T  32766958 gagttatgatacataaacactcttaggtggcaatacaccccttgacacccatacaaaaatctgacatgtggccatatggaccctgcacaag 32767048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 124 - 175
Target Start/End: Complemental strand, 48647783 - 48647732
Alignment:
Q  124 aacatccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcaca 175  Q
    |||| ||||| |||||||| ||| |||||||||||||| |||||||||||||    
T  48647783 aacacccacataaaaatctaacacgtggtcacgtggactccgcacaagcaca 48647732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 175
Target Start/End: Original strand, 3481702 - 3481748
Alignment:
Q  129 ccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcaca 175  Q
    ||||||||||||||||||  | |||||||||||||| ||||||||||    
T  3481702 ccacacaaaaatctgacacatagtcacgtggaccccacacaagcaca 3481748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 83 - 151
Target Start/End: Complemental strand, 18924596 - 18924525
Alignment:
Q  83 tgagttatgatagataagcacccttaggtggcaatac---cctgaacatccacacaaaaatctgacatgtgg 151  Q
    |||||||||||  ||||  ||||||||||||||||||   |||  | |||||||||||||||||||||||||    
T  18924596 tgagttatgatccataaatacccttaggtggcaatacaccccttgatatccacacaaaaatctgacatgtgg 18924525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 130 - 175
Target Start/End: Complemental strand, 28480319 - 28480274
Alignment:
Q  130 cacacaaaaatctgacatgtggtcacgtggaccccgcacaagcaca 175  Q
    |||||||||||||||||||| |||| ||||||||| ||||| ||||    
T  28480319 cacacaaaaatctgacatgtagtcatgtggaccccacacaaacaca 28480274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 130 - 175
Target Start/End: Complemental strand, 28481194 - 28481149
Alignment:
Q  130 cacacaaaaatctgacatgtggtcacgtggaccccgcacaagcaca 175  Q
    |||||||||||||||||||| |||| ||||||||| ||||| ||||    
T  28481194 cacacaaaaatctgacatgtagtcatgtggaccccacacaaacaca 28481149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 130 - 175
Target Start/End: Complemental strand, 28482069 - 28482024
Alignment:
Q  130 cacacaaaaatctgacatgtggtcacgtggaccccgcacaagcaca 175  Q
    |||||||||||||||||||| |||| ||||||||| ||||| ||||    
T  28482069 cacacaaaaatctgacatgtagtcatgtggaccccacacaaacaca 28482024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 107 - 175
Target Start/End: Original strand, 29977908 - 29977979
Alignment:
Q  107 taggtggcaatac---cctgaacatccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcaca 175  Q
    |||||||||||||   ||| |||| |||||||||||||||||| || ||||  |||||||| ||||||||||    
T  29977908 taggtggcaatacaccccttaacacccacacaaaaatctgacacgtagtcatatggaccccacacaagcaca 29977979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 125 - 154
Target Start/End: Complemental strand, 56300221 - 56300192
Alignment:
Q  125 acatccacacaaaaatctgacatgtggtca 154  Q
    ||||||||||||||||||||||||||||||    
T  56300221 acatccacacaaaaatctgacatgtggtca 56300192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 1e-18; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 81 - 171
Target Start/End: Complemental strand, 15508127 - 15508034
Alignment:
Q  81 tttgagttatgatagataagcacccttaggtggcaatac---cctgaacatccacacaaaaatctgacatgtggtcacgtggaccccgcacaag 171  Q
    |||||||||||||| |||| |||||||||||||||||||   |||  ||| ||||||||||||||||||||||| ||  |||||||||||||||    
T  15508127 tttgagttatgatacataaacacccttaggtggcaatacaccccttgacacccacacaaaaatctgacatgtggccatatggaccccgcacaag 15508034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 84 - 171
Target Start/End: Complemental strand, 15990142 - 15990052
Alignment:
Q  84 gagttatgatagataagcacccttaggtggcaatac---cctgaacatccacacaaaaatctgacatgtggtcacgtggaccccgcacaag 171  Q
    ||||||||||| |||| |||||||||||||||||||   |||  ||| ||||||||||||||||||||||| ||  |||||||||||||||    
T  15990142 gagttatgatacataaacacccttaggtggcaatacaccccttgacacccacacaaaaatctgacatgtggccatatggaccccgcacaag 15990052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 84 - 171
Target Start/End: Complemental strand, 30341460 - 30341370
Alignment:
Q  84 gagttatgatagataagcacccttaggtggcaatac---cctgaacatccacacaaaaatctgacatgtggtcacgtggaccccgcacaag 171  Q
    ||||||||||| |||| |||||||||||||||||||   |||  ||| ||||||||||||||||||||||| ||  |||||||||||||||    
T  30341460 gagttatgatacataaacacccttaggtggcaatacaccccttgacacccacacaaaaatctgacatgtggccatatggaccccgcacaag 30341370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 84 - 175
Target Start/End: Original strand, 31976248 - 31976342
Alignment:
Q  84 gagttatgatagataagcacccttaggtggcaata---ccctgaacatccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcaca 175  Q
    ||||||||||| |||  || |||||||||||||||   || | |||| |||||||||||||||||| |||||||| || ||||||||||||||||    
T  31976248 gagttatgatacatagacatccttaggtggcaatataccctttaacacccacacaaaaatctgacacgtggtcacatgaaccccgcacaagcaca 31976342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 101 - 175
Target Start/End: Original strand, 32869695 - 32869772
Alignment:
Q  101 cacccttaggtggcaataccc---tgaacatccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcaca 175  Q
    ||||||||||||||||||| |   |  ||| |||||||||||||||||| || |||||||||||||||||||||||||    
T  32869695 cacccttaggtggcaatacaccctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcaca 32869772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 129 - 175
Target Start/End: Original strand, 17598602 - 17598648
Alignment:
Q  129 ccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcaca 175  Q
    |||||||||||||||||| || |||||||||||||||||||||||||    
T  17598602 ccacacaaaaatctgacacgttgtcacgtggaccccgcacaagcaca 17598648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 101 - 175
Target Start/End: Complemental strand, 22880741 - 22880664
Alignment:
Q  101 cacccttaggtggcaataccc---tgaacatccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcaca 175  Q
    ||||||||||||||||||| |   |  ||| |||||||||| ||||||| || |||||||||||||||||||||||||    
T  22880741 cacccttaggtggcaatacaccctttgacacccacacaaaattctgacacgtagtcacgtggaccccgcacaagcaca 22880664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 129 - 175
Target Start/End: Original strand, 11427666 - 11427712
Alignment:
Q  129 ccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcaca 175  Q
    |||||||||||||||||| || |||||||||| ||||||||||||||    
T  11427666 ccacacaaaaatctgacacgtagtcacgtggatcccgcacaagcaca 11427712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 135 - 177
Target Start/End: Original strand, 30870068 - 30870110
Alignment:
Q  135 aaaaatctgacatgtggtcacgtggaccccgcacaagcacatt 177  Q
    |||||||| |||||||||||| |||||||||||||||||||||    
T  30870068 aaaaatctaacatgtggtcacatggaccccgcacaagcacatt 30870110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 78 - 167
Target Start/End: Complemental strand, 31109506 - 31109414
Alignment:
Q  78 ttttttgagttatgatagataagcacccttaggtggcaataccc---tgaacatccacacaaaaatctgacatgtggtcacgtggaccccgca 167  Q
    |||||||||| |||||  |||  ||||||||||||||||||| |   |  |||||||||||||||||||||| || ||||||| |||||||||    
T  31109506 ttttttgagtaatgattaatagacacccttaggtggcaatacaccctttgacatccacacaaaaatctgacacgtagtcacgtagaccccgca 31109414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 175
Target Start/End: Complemental strand, 23128179 - 23128133
Alignment:
Q  129 ccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcaca 175  Q
    |||||||||||||||||| || |||||||||| ||| ||||||||||    
T  23128179 ccacacaaaaatctgacacgtagtcacgtggatcccacacaagcaca 23128133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 130 - 175
Target Start/End: Complemental strand, 6209516 - 6209471
Alignment:
Q  130 cacacaaaaatctgacatgtggtcacgtggaccccgcacaagcaca 175  Q
    |||||||||||||| || || |||||||||||||||||| ||||||    
T  6209516 cacacaaaaatctgtcacgtagtcacgtggaccccgcactagcaca 6209471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 83 - 175
Target Start/End: Complemental strand, 31953131 - 31953036
Alignment:
Q  83 tgagttatgatagataagcacccttaggtggcaatac---cctgaacatccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcaca 175  Q
    ||||| ||||||||||  || ||||||||||||||||   |||  ||| ||||| |||||||||||||||| ||| ||||||| | ||||| ||||    
T  31953131 tgagtaatgatagatagacatccttaggtggcaatacaccccttgacacccacataaaaatctgacatgtgttcatgtggacctcacacaaacaca 31953036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 175
Target Start/End: Complemental strand, 28536581 - 28536494
Alignment:
Q  89 atgatagataagcacccttaggtggcaat---accctgaacatccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcaca 175  Q
    |||||| |||| || ||||||||||||||   |||||  ||| ||||||||||||||||||   ||||| ||||||||| ||||||||||    
T  28536581 atgatacataaacatccttaggtggcaatacaacccttgacacccacacaaaaatctgaca--cggtcatgtggaccccacacaagcaca 28536494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 5e-18; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 119 - 177
Target Start/End: Complemental strand, 15258991 - 15258933
Alignment:
Q  119 ccctgaacatccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcacatt 177  Q
    ||||| ||||||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  15258991 ccctggacatccacataaaaatctgacatgtggtcacgtggaccctgcacaagcacatt 15258933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 84 - 171
Target Start/End: Original strand, 16383377 - 16383467
Alignment:
Q  84 gagttatgatagataagcacccttaggtggcaatac---cctgaacatccacacaaaaatctgacatgtggtcacgtggaccccgcacaag 171  Q
    ||||||||||| |||| |||||||||||||||||||   |||  ||| ||||||||||||||||||||||| ||  |||||||||||||||    
T  16383377 gagttatgatacataaacacccttaggtggcaatacaccccttgacacccacacaaaaatctgacatgtggccatatggaccccgcacaag 16383467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 77 - 175
Target Start/End: Complemental strand, 40424050 - 40423949
Alignment:
Q  77 attttttgagttatgatagataagcacccttaggtggcaataccc---tgaacatccacacaaaaatctgacatgtggtcacgtggaccccgcacaagca 173  Q
    ||||||||||| |||||| |||   |||||||||||||||||| |   |  |||||||||||||||||||||| || |||| ||||||||||||||||||    
T  40424050 attttttgagtaatgatacatagatacccttaggtggcaatacaccctttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagca 40423951  T
Q  174 ca 175  Q
    ||    
T  40423950 ca 40423949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 84 - 151
Target Start/End: Original strand, 32032725 - 32032794
Alignment:
Q  84 gagttatgatagataagcacccttaggtggcaatac--cctgaacatccacacaaaaatctgacatgtgg 151  Q
    ||||||||||| |||| |||||||||||||||||||  |||  |||||||||||||||||||||||||||    
T  32032725 gagttatgatacataaacacccttaggtggcaatacatccttgacatccacacaaaaatctgacatgtgg 32032794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 83 - 175
Target Start/End: Complemental strand, 504222 - 504127
Alignment:
Q  83 tgagttatgatagataagcacccttaggtggcaataccc---tgaacatccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcaca 175  Q
    ||||| |||||| |||  ||||||||||||||||||| |   |  ||| |||||||||||||||||| || |||||||||||||||||||||||||    
T  504222 tgagtaatgatacatagacacccttaggtggcaatacaccttttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcaca 504127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 84 - 171
Target Start/End: Complemental strand, 24307893 - 24307803
Alignment:
Q  84 gagttatgatagataagcacccttaggtggcaata---ccctgaacatccacacaaaaatctgacatgtggtcacgtggaccccgcacaag 171  Q
    ||||||||||| |||| ||||||||||||||||||   ||||  ||| |||||||||||||||| |||||| ||  |||||||||||||||    
T  24307893 gagttatgatacataaacacccttaggtggcaatacatcccttgacacccacacaaaaatctgatatgtggccatatggaccccgcacaag 24307803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 84 - 171
Target Start/End: Original strand, 34307216 - 34307306
Alignment:
Q  84 gagttatgatagataagcacccttaggtggcaata---ccctgaacatccacacaaaaatctgacatgtggtcacgtggaccccgcacaag 171  Q
    ||||||||||| |||| ||||||||||||||||||   ||||  ||| ||||||||||||||||||||||| ||  || ||||||||||||    
T  34307216 gagttatgatacataaacacccttaggtggcaatacaccccttgacacccacacaaaaatctgacatgtggacatatgaaccccgcacaag 34307306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 101 - 175
Target Start/End: Original strand, 14547939 - 14548016
Alignment:
Q  101 cacccttaggtggcaataccc---tgaacatccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcaca 175  Q
    ||||||||||||||||||| |   |  ||| |||||||||||||||||| || |||||||||||||||||||||||||    
T  14547939 cacccttaggtggcaatacaccatttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcaca 14548016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 83 - 177
Target Start/End: Original strand, 38229428 - 38229524
Alignment:
Q  83 tgagttatgatagataagcacccttaggtggcaatac---cctgaacatccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcacatt 177  Q
    |||||||||||| || | ||| |||||||||||||||   ||||| || ||||||||||||||||||||||||||||||||  | | |||||||||||    
T  38229428 tgagttatgatacatgaacactcttaggtggcaatacgctcctga-cacccacacaaaaatctgacatgtggtcacgtggattctgtacaagcacatt 38229524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 129 - 175
Target Start/End: Original strand, 9122233 - 9122279
Alignment:
Q  129 ccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcaca 175  Q
    ||||||||||||||||||||| |||||||||| ||||||||||||||    
T  9122233 ccacacaaaaatctgacatgtagtcacgtggatcccgcacaagcaca 9122279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 129 - 175
Target Start/End: Original strand, 12831095 - 12831141
Alignment:
Q  129 ccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcaca 175  Q
    |||||||||||||||||| || |||||||||||||||||||||||||    
T  12831095 ccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcaca 12831141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 129 - 175
Target Start/End: Original strand, 15197381 - 15197427
Alignment:
Q  129 ccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcaca 175  Q
    |||||||||||||||||| || |||||||||||||||||||||||||    
T  15197381 ccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcaca 15197427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 129 - 175
Target Start/End: Complemental strand, 8841484 - 8841438
Alignment:
Q  129 ccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcaca 175  Q
    |||||||||||||| ||| || |||||||||||||||||||||||||    
T  8841484 ccacacaaaaatctaacacgtagtcacgtggaccccgcacaagcaca 8841438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 129 - 175
Target Start/End: Complemental strand, 10284683 - 10284637
Alignment:
Q  129 ccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcaca 175  Q
    |||||||||||| ||||| || |||||||||||||||||||||||||    
T  10284683 ccacacaaaaatttgacacgtagtcacgtggaccccgcacaagcaca 10284637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 129 - 175
Target Start/End: Complemental strand, 23122649 - 23122603
Alignment:
Q  129 ccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcaca 175  Q
    |||||||||||||||||| || ||||||||||||||||| |||||||    
T  23122649 ccacacaaaaatctgacacgtagtcacgtggaccccgcataagcaca 23122603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 129 - 175
Target Start/End: Original strand, 37038527 - 37038573
Alignment:
Q  129 ccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcaca 175  Q
    |||||||||||||||||| || |||||||||| ||||||||||||||    
T  37038527 ccacacaaaaatctgacacgtagtcacgtggatcccgcacaagcaca 37038573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 84 - 173
Target Start/End: Complemental strand, 44507187 - 44507095
Alignment:
Q  84 gagttatgatagataagcacccttaggtggcaataccctg---aacatccacacaaaaatctgacatgtggtcacgtggaccccgcacaagca 173  Q
    |||| |||||| |||  ||||||||||||| ||||| ||    |||| |||||||||||||||||| || ||||||||||||||| |||||||    
T  44507187 gagtaatgatacatagacacccttaggtggtaatacactctttaacacccacacaaaaatctgacacgtagtcacgtggaccccgtacaagca 44507095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 84 - 164
Target Start/End: Complemental strand, 14055692 - 14055609
Alignment:
Q  84 gagttatgatagataagcacccttaggtggcaatac---cctgaacatccacacaaaaatctgacatgtggtcacgtggacccc 164  Q
    ||||||||||| ||   |||||||||||| ||||||   |||  |||||||||||||||||| |||||| ||||||||||||||    
T  14055692 gagttatgatacattgacacccttaggtgacaatacactccttgacatccacacaaaaatcttacatgtagtcacgtggacccc 14055609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 171
Target Start/End: Complemental strand, 16056501 - 16056411
Alignment:
Q  84 gagttatgatagataagcacccttaggtggcaatac---cctgaacatccacacaaaaatctgacatgtggtcacgtggaccccgcacaag 171  Q
    ||||||||||| |||| || ||||| ||| ||||||   |||  ||| ||||||||||||||||||||||| ||  |||||||||||||||    
T  16056501 gagttatgatacataaacatccttatgtgacaatacatcccttgacacccacacaaaaatctgacatgtggccatatggaccccgcacaag 16056411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 175
Target Start/End: Original strand, 5957878 - 5957924
Alignment:
Q  129 ccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcaca 175  Q
    |||||||||||||||||| || |||||||||| ||||||||| ||||    
T  5957878 ccacacaaaaatctgacacgtagtcacgtggatcccgcacaatcaca 5957924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 175
Target Start/End: Complemental strand, 15048234 - 15048188
Alignment:
Q  129 ccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcaca 175  Q
    |||||||||||||||||| || | ||| |||||||||||||||||||    
T  15048234 ccacacaaaaatctgacacgtagccacatggaccccgcacaagcaca 15048188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 175
Target Start/End: Complemental strand, 34012348 - 34012302
Alignment:
Q  129 ccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcaca 175  Q
    |||||||||||| ||||| || |||||||||| ||||||||||||||    
T  34012348 ccacacaaaaatttgacacgtagtcacgtggatcccgcacaagcaca 34012302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 175
Target Start/End: Complemental strand, 43414633 - 43414587
Alignment:
Q  129 ccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcaca 175  Q
    |||||||||||||| ||| |||||||| |||| ||||||||||||||    
T  43414633 ccacacaaaaatctaacacgtggtcacatggatcccgcacaagcaca 43414587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 170
Target Start/End: Original strand, 17443874 - 17443914
Alignment:
Q  130 cacacaaaaatctgacatgtggtcacgtggaccccgcacaa 170  Q
    |||||||||||||||||||| |||| ||||||||| |||||    
T  17443874 cacacaaaaatctgacatgtagtcatgtggaccccacacaa 17443914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 8e-17; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 84 - 171
Target Start/End: Original strand, 38044197 - 38044287
Alignment:
Q  84 gagttatgatagataagcacccttaggtggcaatac---cctgaacatccacacaaaaatctgacatgtggtcacgtggaccccgcacaag 171  Q
    ||||||||||| |||| |||||||||||||||||||   |||  ||||||||||||||||||||||||| | ||  |||||||||||||||    
T  38044197 gagttatgatacataaacacccttaggtggcaatacaccccttgacatccacacaaaaatctgacatgtagccatatggaccccgcacaag 38044287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 84 - 177
Target Start/End: Original strand, 36208173 - 36208269
Alignment:
Q  84 gagttatgatagataagcacccttaggtggcaataccctga---acatccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcacatt 177  Q
    ||||||||||| |||  ||||||||||||| |||||  | |   ||| ||||||||||| ||||||||||||||||||||||| |||||||||||||    
T  36208173 gagttatgatacatagacacccttaggtggtaatacattcattgacacccacacaaaaagctgacatgtggtcacgtggaccctgcacaagcacatt 36208269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 84 - 175
Target Start/End: Original strand, 7389389 - 7389483
Alignment:
Q  84 gagttatgatagataagcacccttaggtggcaataccctga---acatccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcaca 175  Q
    |||| |||||| |||  ||||||||||||||||||| ||     ||| |||||||||||||||||| || |||||||||||||||||||||||||    
T  7389389 gagtaatgatacatagacacccttaggtggcaatacactctttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcaca 7389483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 84 - 171
Target Start/End: Original strand, 22343361 - 22343451
Alignment:
Q  84 gagttatgatagataagcacccttaggtggcaata---ccctgaacatccacacaaaaatctgacatgtggtcacgtggaccccgcacaag 171  Q
    ||||||||||| |||| ||||||||||||||||||   ||||  ||| ||||||||||||||||||||||  ||  |||||||||||||||    
T  22343361 gagttatgatacataaacacccttaggtggcaatacaccccttgacacccacacaaaaatctgacatgtgaccatatggaccccgcacaag 22343451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 84 - 175
Target Start/End: Original strand, 38837217 - 38837311
Alignment:
Q  84 gagttatgatagataagcacccttaggtggcaataccc---tgaacatccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcaca 175  Q
    |||| |||||| |||  ||||||||||||||||||| |   || ||| | |||||||||||||||| || |||||||||||||||||||||||||    
T  38837217 gagtaatgatacatagacacccttaggtggcaatacacccttgtacacctacacaaaaatctgacacgtagtcacgtggaccccgcacaagcaca 38837311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 84 - 171
Target Start/End: Original strand, 41915741 - 41915831
Alignment:
Q  84 gagttatgatagataagcacccttaggtggcaatac---cctgaacatccacacaaaaatctgacatgtggtcacgtggaccccgcacaag 171  Q
    ||||||||||| |||| |||||||||||||||||||   |||  ||| | ||||||||||||||||||||| ||  |||||||||||||||    
T  41915741 gagttatgatacataaacacccttaggtggcaatacaccccttgacacctacacaaaaatctgacatgtggccatatggaccccgcacaag 41915831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 124 - 175
Target Start/End: Complemental strand, 32951550 - 32951499
Alignment:
Q  124 aacatccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcaca 175  Q
    ||||||||||||||||||| ||| || |||||||||||||||||||||||||    
T  32951550 aacatccacacaaaaatctaacacgtagtcacgtggaccccgcacaagcaca 32951499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 84 - 177
Target Start/End: Original strand, 12310906 - 12311000
Alignment:
Q  84 gagttatgatagataagcacccttaggtggcaatacc-ctgaacatccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcacatt 177  Q
    ||||||||||| |||  ||||||||||||| ||||   ||| | ||||| |||||||||||||||||||||||||||| || | |||||||||||    
T  12310906 gagttatgatacatagacacccttaggtggaaatatatctggatatccatacaaaaatctgacatgtggtcacgtggatcctgaacaagcacatt 12311000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 129 - 175
Target Start/End: Original strand, 38267088 - 38267134
Alignment:
Q  129 ccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcaca 175  Q
    |||||||||||||||||| || |||||||||||||||||||||||||    
T  38267088 ccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcaca 38267134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 84 - 176
Target Start/End: Complemental strand, 46374902 - 46374807
Alignment:
Q  84 gagttatgatagataagcacccttaggtggcaataccc---tgaacatccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcacat 176  Q
    ||||||||||| |||  || ||||||||||||| || |   | |||| |||||||||||||||||| |||| ||| ||||||||||||||||||||    
T  46374902 gagttatgatacatagacatccttaggtggcaacacaccctttaacacccacacaaaaatctgacacgtggccacatggaccccgcacaagcacat 46374807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 84 - 171
Target Start/End: Original strand, 7727906 - 7727996
Alignment:
Q  84 gagttatgatagataagcacccttaggtggcaataccc---tgaacatccacacaaaaatctgacatgtggtcacgtggaccccgcacaag 171  Q
    ||||||||||| |||| ||||||||||||| ||||| |   |  |||| |||| ||||||||||||||||||||  |||||||||||||||    
T  7727906 gagttatgatacataaacacccttaggtggtaatacacctcttgacattcacataaaaatctgacatgtggtcatatggaccccgcacaag 7727996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 79 - 170
Target Start/End: Complemental strand, 32564531 - 32564437
Alignment:
Q  79 tttttgagttatgatagataagcacccttaggtggcaatac---cctgaacatccacacaaaaatctgacatgtggtcacgtggaccccgcacaa 170  Q
    |||||||||||||||| |||| ||  |||||||||||||||   |||  ||| |||||||||||||||||||||||  |  ||||||||||||||    
T  32564531 tttttgagttatgatacataaacattcttaggtggcaatacaccccttgacacccacacaaaaatctgacatgtggctatatggaccccgcacaa 32564437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 84 - 175
Target Start/End: Complemental strand, 36362013 - 36361919
Alignment:
Q  84 gagttatgatagataagcacccttaggtggcaatac---cctgaacatccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcaca 175  Q
    |||| |||||| |||  |||||||||||||||||||   | |  ||| |||||||||||||||||| || |||||||||||||| ||||||||||    
T  36362013 gagtaatgatacatagacacccttaggtggcaatacatcctttgacacccacacaaaaatctgacacgtagtcacgtggaccccacacaagcaca 36361919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 170
Target Start/End: Complemental strand, 40846213 - 40846124
Alignment:
Q  84 gagttatgatagataagcacccttaggtggcaatac---cctgaacatccacacaaaaatctgacatgtggtcacgtggaccccgcacaa 170  Q
    ||||||||||| |||| || ||||||||||||||||   |||  |||||||||||||||||| |||||| || |  ||||||||||||||    
T  40846213 gagttatgatacataaacatccttaggtggcaatacaccccttgacatccacacaaaaatctaacatgtagttatatggaccccgcacaa 40846124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 129 - 175
Target Start/End: Original strand, 3784043 - 3784089
Alignment:
Q  129 ccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcaca 175  Q
    |||||||||||||||||| || |||||||||| ||||||||||||||    
T  3784043 ccacacaaaaatctgacacgtagtcacgtggatcccgcacaagcaca 3784089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 83 - 171
Target Start/End: Original strand, 8238211 - 8238303
Alignment:
Q  83 tgagttatgatagataagcaccct-taggtggcaataccc---tgaacatccacacaaaaatctgacatgtggtcacgtggaccccgcacaag 171  Q
    |||||||||||| |||| |||||| ||||||||||||| |   |  ||| ||||||||||||||||||||| ||||  |||||||||||||||    
T  8238211 tgagttatgatacataaacaccctgtaggtggcaatacaccctttgacacccacacaaaaatctgacatgtagtcatatggaccccgcacaag 8238303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 125 - 175
Target Start/End: Complemental strand, 16374880 - 16374830
Alignment:
Q  125 acatccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcaca 175  Q
    |||||||||||||||||||||| ||||||||||||| | | ||||||||||    
T  16374880 acatccacacaaaaatctgacacgtggtcacgtggatctcacacaagcaca 16374830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 129 - 175
Target Start/End: Original strand, 19329890 - 19329936
Alignment:
Q  129 ccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcaca 175  Q
    |||||||||||||||||| ||  ||||||||||||||||||||||||    
T  19329890 ccacacaaaaatctgacacgtaatcacgtggaccccgcacaagcaca 19329936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 129 - 175
Target Start/End: Original strand, 36362074 - 36362120
Alignment:
Q  129 ccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcaca 175  Q
    |||||||||||||||||| || |||||||||||||| ||||||||||    
T  36362074 ccacacaaaaatctgacacgtagtcacgtggaccccacacaagcaca 36362120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 175
Target Start/End: Original strand, 35137532 - 35137627
Alignment:
Q  83 tgagttatgatagataagcacccttaggtggcaataccc---tgaacatccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcaca 175  Q
    ||||| |||||| |||  ||||||||||||||||||| |   |  ||| |||||||||||||| ||| || |||||||||||||||||||| ||||    
T  35137532 tgagtaatgataaatagacacccttaggtggcaatacaccctttgacacccacacaaaaatctaacacgtagtcacgtggaccccgcacaaacaca 35137627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 175
Target Start/End: Complemental strand, 8080429 - 8080389
Alignment:
Q  135 aaaaatctgacatgtggtcacgtggaccccgcacaagcaca 175  Q
    |||||||||||| || |||||||||||||||||||||||||    
T  8080429 aaaaatctgacacgtagtcacgtggaccccgcacaagcaca 8080389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 177
Target Start/End: Complemental strand, 27744361 - 27744313
Alignment:
Q  129 ccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcacatt 177  Q
    ||||||||||||||||||||||| |||||||| ||| || |||||||||    
T  27744361 ccacacaaaaatctgacatgtggccacgtggatccctcataagcacatt 27744313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 124 - 175
Target Start/End: Original strand, 3694410 - 3694461
Alignment:
Q  124 aacatccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcaca 175  Q
    |||| |||||||||||||||||| || |||| ||||| ||||||||||||||    
T  3694410 aacacccacacaaaaatctgacacgtagtcatgtggatcccgcacaagcaca 3694461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 163
Target Start/End: Complemental strand, 2318295 - 2318261
Alignment:
Q  129 ccacacaaaaatctgacatgtggtcacgtggaccc 163  Q
    ||||||||||||||||| |||||||||||||||||    
T  2318295 ccacacaaaaatctgacgtgtggtcacgtggaccc 2318261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 175
Target Start/End: Original strand, 3434610 - 3434656
Alignment:
Q  129 ccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcaca 175  Q
    ||||||||||| |||||| || |||||||||| ||||||||||||||    
T  3434610 ccacacaaaaaactgacacgtagtcacgtggatcccgcacaagcaca 3434656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 175
Target Start/End: Complemental strand, 4999566 - 4999520
Alignment:
Q  129 ccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcaca 175  Q
    |||||||||||||||| | || |||||||||||||||||||| ||||    
T  4999566 ccacacaaaaatctgatacgtagtcacgtggaccccgcacaaacaca 4999520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 175
Target Start/End: Complemental strand, 19436239 - 19436193
Alignment:
Q  129 ccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcaca 175  Q
    |||||||||||||||||| || |||||||||| |||||| |||||||    
T  19436239 ccacacaaaaatctgacacgtagtcacgtggatcccgcataagcaca 19436193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 175
Target Start/End: Original strand, 40957755 - 40957801
Alignment:
Q  129 ccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcaca 175  Q
    |||||||||||||||||| || |||||||||| |||| |||||||||    
T  40957755 ccacacaaaaatctgacacgtagtcacgtggatcccgtacaagcaca 40957801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 173
Target Start/End: Original strand, 41423732 - 41423774
Alignment:
Q  131 acacaaaaatctgacatgtggtcacgtggaccccgcacaagca 173  Q
    ||||||||||||||||||||||||||| || |||| |||||||    
T  41423732 acacaaaaatctgacatgtggtcacgtagatcccgtacaagca 41423774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 175
Target Start/End: Complemental strand, 10209 - 10115
Alignment:
Q  84 gagttatgatagataagcacccttaggtggcaatac---cctgaacatccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcaca 175  Q
    ||||||||||| |||  |||| ||||||||||||||   | |  ||||||||| |||||||||||| || |||||||||||| || |||||||||    
T  10209 gagttatgatacatagacacctttaggtggcaatacatcctttgacatccacataaaaatctgacacgtagtcacgtggaccgcgtacaagcaca 10115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1268 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold1268
Description:

Target: scaffold1268; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 124 - 175
Target Start/End: Complemental strand, 986 - 935
Alignment:
Q  124 aacatccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcaca 175  Q
    |||||||||||||||| |||||| || |||||||| | ||||||||||||||    
T  986 aacatccacacaaaaaactgacacgtagtcacgtgaatcccgcacaagcaca 935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1267 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold1267
Description:

Target: scaffold1267; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 124 - 175
Target Start/End: Complemental strand, 986 - 935
Alignment:
Q  124 aacatccacacaaaaatctgacatgtggtcacgtggaccccgcacaagcaca 175  Q
    |||||||||||||||| |||||| || |||||||| | ||||||||||||||    
T  986 aacatccacacaaaaaactgacacgtagtcacgtgaatcccgcacaagcaca 935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 170
Target Start/End: Original strand, 152515 - 152587
Alignment:
Q  101 cacccttaggtggcaatac---cctgaacatccacacaaaaatctgacatgtggtcacgtggaccccgcacaa 170  Q
    ||||||| |||||||||||   |||  ||| ||||||||||||||||||||||||||  |||| |||||||||    
T  152515 cacccttgggtggcaatacaccccttgacacccacacaaaaatctgacatgtggtcatatggatcccgcacaa 152587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University