View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17303_low_7 (Length: 563)
Name: NF17303_low_7
Description: NF17303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17303_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 466; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 18 - 549
Target Start/End: Complemental strand, 49975057 - 49974530
Alignment:
| Q |
18 |
cattaaaggttgccctaagaatgaaagattacgtttatacctgaaagaaaccgagacacagggcatagggtacgtatacattttgtgtagttattgattg |
117 |
Q |
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| T |
49975057 |
cattaaaggttgccctaagaatgaaagattacgtttatacctgaaagaaaccgagacacagggcatagggtacgtatacattttgtgtagttattgattg |
49974958 |
T |
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| Q |
118 |
tgctaaaaagagttgggaggggaaggttgagaacatgtgatgtatggtccacaatagcttaatacctccatcttgatgtaaaagtctacaaccccgtaac |
217 |
Q |
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| T |
49974957 |
tgctaaaaagagttgggaggggaaggtcgagaacatgtgatgtatggtccacaatagcttaatacctccatcttgatgtaaaagtctacaaccccgtaac |
49974858 |
T |
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| Q |
218 |
ttagacttatagcaccaacgatacgttgctatcattagggttttataatctataagctgagatgagatagtctcaacctcatatgtgttgcnnnnnnnnc |
317 |
Q |
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| T |
49974857 |
ttagacttatagcaccaacgatacgttgctatcattagggttttataatctataagctg-----agatagtctcaacctcatatgtgttgc-tttttttc |
49974764 |
T |
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| Q |
318 |
tttgaaatttggtatatctcatagatgacatatacatagtccttttcaaaaaa--tatacattgatcagagaaacggatttgaatttcattattatttca |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49974763 |
tttgaaatttggtatatctcatagatgacatatacatagtccttttcaaaaaaattatacattgatcagagaaacggatttgaatttcattattatttca |
49974664 |
T |
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| Q |
416 |
ttctctgtcattacttgatatatgcttagatgtatttctcgcaaagaatcgacctctaatgactactttatatggttgcttagtgttatccgtatatata |
515 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49974663 |
ttctctgtcattacttgatatatgctgagatgtatttctcgcaaagaatcgacctctaatgactactttatatggttgcttagtgttatccgtatatata |
49974564 |
T |
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| Q |
516 |
tgcagattgcagaagcaactattcattactactt |
549 |
Q |
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| T |
49974563 |
tgcagattgcagaagcaactattcattactactt |
49974530 |
T |
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