View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17303_low_9 (Length: 520)
Name: NF17303_low_9
Description: NF17303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17303_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 455; Significance: 0; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 18 - 517
Target Start/End: Complemental strand, 37217325 - 37216827
Alignment:
| Q |
18 |
gtaaagcactattaacccttacttttataaagaaaatggtataacaaaacatgttttaaatatgattgaaaatttaccaggttccagtgatgaacacttg |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37217325 |
gtaaagcactattaacccttacttttataaagaaaatggtataacaaaacatgttttaaatatgattgaaaatttaccaggttccagtgatgaacacttg |
37217226 |
T |
|
| Q |
118 |
ttaaaactttcagttcagaaagaaattctcttgttgcttgcatcttcatcttcttgattgcaattttctgtgtaattaaagacaccttacttaacnnnnn |
217 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37217225 |
ttaaaactttcagttcagagagaaattctcttgttgcttgcatcttcatcttcttgattgcaattttctgtgtaattaaagacaccttacttaacaaaaa |
37217126 |
T |
|
| Q |
218 |
nncataaaatttgaaacaggcacatggaatggattgataccaacaagaaaaaattattctctatactatcatactatgcttgttagaatgagtttaaaac |
317 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37217125 |
aacataaaatttgaaacaggcacatggaatggattgataccaacaagaaaaaattattctctatactatcatactatgcttgttagaatgagtttaaaac |
37217026 |
T |
|
| Q |
318 |
aaatttaatgaattctggttcatagcacctttcctgcatttggaatgattttaaatataccattcaaaaagaaagaaattacagtggaatgagtctctga |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37217025 |
aaatttaatgaattctggttcatagcacctttcctgcatttggaatgattttaaatataccattcaaaaagaaagaaattacagtggaatgagtctctga |
37216926 |
T |
|
| Q |
418 |
gggaatataaactccgcccccttgaggcacaccagacacttaccactagttgcaaagcaaaactaacaatgctatgattacaaacctggcctctctgctc |
517 |
Q |
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|||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
37216925 |
gggaatataaactccg-ccccttgaggcacgccagacacttaacactagttgcaaagcaaaactaacaatgctatgattacaaacctggcctctcagctc |
37216827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 90 - 399
Target Start/End: Complemental strand, 37223253 - 37222952
Alignment:
| Q |
90 |
tttaccaggttccagtgatgaacacttgttaaaactttcagttcagaaagaaattctcttgttgcttgcatcttcatcttcttgattgcaattttctgtg |
189 |
Q |
| |
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||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37223253 |
tttaccaggttccggtgatgaacacttgttaacactttcagttcagaaagaaattctcttgttgcttgcatcttcatcttcttgattgcaattttctgtg |
37223154 |
T |
|
| Q |
190 |
taattaaagacaccttacttaacnnnnnnncataaaatttgaaacaggcacatggaatggattgataccaacaagaaaaaattattctctatactatcat |
289 |
Q |
| |
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|||||||||||| |||||||||| |||||||||||||| ||||||||||||| |||| || ||||||||||||||||||| | | || |
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| T |
37223153 |
taattaaagacagcttacttaacaaacgaacataaaatttgaaataggcacatggaatttattgttagcaacaagaaaaaattattc-caa-------at |
37223062 |
T |
|
| Q |
290 |
actatgcttgttagaatgagtttaaaacaaatttaatgaattctggttcatagcacctttcctgcatttggaatgattttaaatataccattcaaaaaga |
389 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || ||| ||||||||| | |||| ||| ||| || |
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| T |
37223061 |
actatgcttgttagaatgagtttaaaacaaatttaatgaattctggtacatagcacctttcctgtatatggtatgattttatacatacaattgaaagtga |
37222962 |
T |
|
| Q |
390 |
aagaaattac |
399 |
Q |
| |
|
||||||||| |
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|
| T |
37222961 |
gagaaattac |
37222952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 77 - 407
Target Start/End: Complemental strand, 37232197 - 37231875
Alignment:
| Q |
77 |
atatgattgaaaatttaccaggttccagtgatgaacacttgttaaaactttcagttcagaaagaaattctcttgttgcttgcatcttcatcttcttgatt |
176 |
Q |
| |
|
||||| |||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
37232197 |
atatgtttgaaaatttaccaggtttaagtgacgaacacttgttaagactttcagttcagaaagaaattctcttgttgcttgcgtcttcatcttcttgatt |
37232098 |
T |
|
| Q |
177 |
gcaattttctgtgtaattaaagacaccttacttaacnnnnnnncataaaatttgaaacaggcacatggaatggattgataccaacaagaaaaaattattc |
276 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||| |||| || |||||| |||||| |||||||||||| ||| ||||||||||| | ||| |
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|
| T |
37232097 |
gcaactttctgtgtaattaaagatcgcttacttaatgaaataacatataagttgaaataggcacgtggaatggattgttacaaacaagaaaaagctcttc |
37231998 |
T |
|
| Q |
277 |
tctatactatcatactatgcttgttagaatgagtttaaaacaaatttaatgaattctggttcatagcacctttcctgcatttggaatgattttaaatata |
376 |
Q |
| |
|
|| ||||||||||||||||||| |||||| |||||||| ||||| |||||| |||||||||||||||| || ||| ||||||||| ||||| |
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| T |
37231997 |
act--------atactatgcttgttagaataagtttataacaaattcgatgaaatctggtgcatagcacctttcctgtatatggtatgattttatatata |
37231906 |
T |
|
| Q |
377 |
ccattcaaaaagaaagaaattacagtggaat |
407 |
Q |
| |
|
||||| |||| || ||||||||||||||||| |
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| T |
37231905 |
ccattgaaaatgagagaaattacagtggaat |
37231875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 83 - 199
Target Start/End: Original strand, 37385713 - 37385829
Alignment:
| Q |
83 |
ttgaaaatttaccaggttccagtgatgaacacttgttaaaactttcagttcagaaagaaattctcttgttgcttgcatcttcatcttcttgattgcaatt |
182 |
Q |
| |
|
|||||||||||||||||| ||||| ||||| |||||||| | ||||||||||| ||||||||| ||||||||||||||||||||||| || |||||| || |
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|
| T |
37385713 |
ttgaaaatttaccaggttgcagtggtgaactcttgttaagattttcagttcagcaagaaattcccttgttgcttgcatcttcatcttttttattgcagtt |
37385812 |
T |
|
| Q |
183 |
ttctgtgtaattaaaga |
199 |
Q |
| |
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|||||||||||| |||| |
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| T |
37385813 |
ttctgtgtaattgaaga |
37385829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 415 - 510
Target Start/End: Complemental strand, 37231850 - 37231756
Alignment:
| Q |
415 |
tgagggaatataaactccgcccccttgaggcacaccagacacttaccactagttgcaaagcaaaactaacaatgctatgattacaaacctggcctc |
510 |
Q |
| |
|
||||||||||| ||||||| ||| ||||||||| || ||| | |||||||| |||||||| ||||||||||| | |||||| |||||||| ||||| |
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| T |
37231850 |
tgagggaatatgaactccgtccc-ttgaggcacgcccgactcataccactaattgcaaagtaaaactaacaaagttatgataacaaaccttgcctc |
37231756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 470 - 512
Target Start/End: Complemental strand, 37222879 - 37222837
Alignment:
| Q |
470 |
caaagcaaaactaacaatgctatgattacaaacctggcctctc |
512 |
Q |
| |
|
||||| |||||||||||||||| |||||||||||||||||||| |
|
|
| T |
37222879 |
caaagtaaaactaacaatgctacgattacaaacctggcctctc |
37222837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 468 - 517
Target Start/End: Original strand, 37385918 - 37385967
Alignment:
| Q |
468 |
tgcaaagcaaaactaacaatgctatgattacaaacctggcctctctgctc |
517 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||||| ||||||| |||| |
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|
| T |
37385918 |
tgcaaagtaaaactaacaatgctatgataacaaaccttgcctctcggctc |
37385967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 91 - 195
Target Start/End: Complemental strand, 37198096 - 37197992
Alignment:
| Q |
91 |
ttaccaggttccagtgatgaacacttgttaaaactttcagttcagaaagaaattctcttgttgcttgcatcttcatcttcttgattgcaattttctgtgt |
190 |
Q |
| |
|
||||||||||| ||||||||||| || || || |||| |||| |||||||||| ||||||||| ||| | |||||| || |||||| ||||||||| |
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|
| T |
37198096 |
ttaccaggttcacgtgatgaacacgcgtcaacaccttcaactcagcaagaaattcttttgttgctttcatgtccatcttttttattgcagctttctgtgt |
37197997 |
T |
|
| Q |
191 |
aatta |
195 |
Q |
| |
|
||||| |
|
|
| T |
37197996 |
aatta |
37197992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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