View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17304_high_1 (Length: 503)

Name: NF17304_high_1
Description: NF17304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17304_high_1
NF17304_high_1
[»] chr1 (8 HSPs)
chr1 (19-499)||(25431027-25431515)
chr1 (19-499)||(24969182-24969676)
chr1 (19-117)||(23899647-23899745)
chr1 (387-493)||(30097379-30097485)
chr1 (204-339)||(30097152-30097284)
chr1 (65-105)||(30094103-30094143)
chr1 (65-105)||(20013209-20013249)
chr1 (465-493)||(20013143-20013171)
[»] scaffold0046 (2 HSPs)
scaffold0046 (204-330)||(87545-87668)
scaffold0046 (380-493)||(87355-87471)


Alignment Details
Target: chr1 (Bit Score: 420; Significance: 0; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 19 - 499
Target Start/End: Complemental strand, 25431515 - 25431027
Alignment:
Q  19 ctcctacccataaccgtaatgatttaatgctcccaactacatcgagaactactctcgatggtcccttcatattgcaggtttcaattttgatcccgttccg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||     
T  25431515 ctcctacccataaccgtaatgatttaatgctcccaactacatcgataactactctcgatggtcccttcatattgcaggtttcaatttcgatcccgttcca 25431416  T
Q  119 ttccattcagttaattgattgtattcttcttttattattcacacccaaatgtattggcaggtcgatgaattttcgaatctcgttgctccacggaaaggta 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||    
T  25431415 ttccattcagttaattgattgtattcttcttttattattcacacccaaatgcattggcaggtcgatgaatttacgaatctcattgctccacggaaaggta 25431316  T
Q  219 ggatgttgacgttgtcaatgaccgatggtgttaataaagtctttggagtagagaactacttcaggcctattgaagacattcaaccttcttctgcgcctct 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25431315 ggatgttgacgttgtcaatgaccgatggtgttaataaagtctttggagtagagaactacttcaggcctattgaagacattcaaccttcttctgcgcctct 25431216  T
Q  319 tggattaaaggtttcttccatgtcatcttaatacatacatat--------atattcttattgaacttacagggatctattgctacttgtaggtcaaattc 410  Q
    |||||||||||||||||||||||||||| |||||||||||||        |||||||||||| |||||||||||||||||||||||||||||||||||||    
T  25431215 tggattaaaggtttcttccatgtcatctgaatacatacatatatatatatatattcttattggacttacagggatctattgctacttgtaggtcaaattc 25431116  T
Q  411 tctaatgtaaccgtgtccaaaggatgtttctggatgcttcctgaaaatactatagtattgggaggaggattagttgatgatgatgtcca 499  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  25431115 tctaatgtaaccgtgtccaaaggatgtttccggatgcttcctgaaaatactatagtattgggaggaggattagttgatgatgacgtcca 25431027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 19 - 499
Target Start/End: Original strand, 24969182 - 24969676
Alignment:
Q  19 ctcctacccataaccgtaatgatttaatgctcccaactacatcgagaactactctcgatggtcccttcatattgcaggtttcaattttgatcccgttccg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||     
T  24969182 ctcctacccataaccgtaatgatttaatgctcccaactacatcgataactactctcgatggtcccttcatattgcaggtttcaatttcgatcccgttcca 24969281  T
Q  119 ttccattcagttaattgattgtattcttcttttattattcacacccaaatgtattggcaggtcgatgaattttcgaatctcgttgctccacggaaaggta 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||    
T  24969282 ttccattcagttaattgattgtattcttcttttattattcacacccaaatgcattggcaggtcgatgaatttacgaatctcattgctccacggaaaggta 24969381  T
Q  219 ggatgttgacgttgtcaatgaccgatggtgttaataaagtctttggagtagagaactacttcaggcctattgaagacattcaaccttcttctgcgcctct 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24969382 ggatgttgacgttgtcaatgaccgatggtgttaataaagtctttggagtagagaactacttcaggcctattgaagacattcaaccttcttctgcgcctct 24969481  T
Q  319 tggattaaaggtttcttccatgtcatcttaatacatac--------------atatatattcttattgaacttacagggatctattgctacttgtaggtc 404  Q
    |||||||||||||||||||||||||||| |||||||||              |||||||||||||||| ||||||||||||||||||||||||| |||||    
T  24969482 tggattaaaggtttcttccatgtcatctgaatacatacatatatatatatatatatatattcttattggacttacagggatctattgctacttgcaggtc 24969581  T
Q  405 aaattctctaatgtaaccgtgtccaaaggatgtttctggatgcttcctgaaaatactatagtattgggaggaggattagttgatgatgatgtcca 499  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  24969582 aaattctctaatgtaaccgtgtccaaaggatgtttctggatgcttcctgaaaatactatagtattgggaggaggattagttgatgatgacgtcca 24969676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 19 - 117
Target Start/End: Complemental strand, 23899745 - 23899647
Alignment:
Q  19 ctcctacccataaccgtaatgatttaatgctcccaactacatcgagaactactctcgatggtcccttcatattgcaggtttcaattttgatcccgttcc 117  Q
    |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  23899745 ctcctagccataaccgtaatgatttcatgctcccaactacatcgagaactactctcgatggtcccttcatattgcaggtttcaatttcgatcccgttcc 23899647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 387 - 493
Target Start/End: Original strand, 30097379 - 30097485
Alignment:
Q  387 tattgctacttgtaggtcaaattctctaatgtaaccgtgtccaaaggatgtttctggatgcttcctgaaaatactatagtattgggaggaggattagttg 486  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||  ||||| | |||||||||||||||||||||||||||| |||||||||| ||    
T  30097379 tattgctacttgtaggtcaaattctctaatgtaagcgtgtccaaaggaattttctcgctgcttcctgaaaatactatagtattggggggaggattagctg 30097478  T
Q  487 atgatga 493  Q
    |||||||    
T  30097479 atgatga 30097485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 204 - 339
Target Start/End: Original strand, 30097152 - 30097284
Alignment:
Q  204 ctccacggaaaggtaggatgttgacgttgtcaatgaccgatggtgttaataaagtctttggagtagagaactacttcaggcctattgaagacattcaacc 303  Q
    |||||||| | |||| |||| ||| ||||||||||||||||||||||  |||||||| |||| |||||| ||||  ||||||||||  || ||||||||     
T  30097152 ctccacgggatggtacgatggtgatgttgtcaatgaccgatggtgttcgtaaagtctatggaatagagacctaccgcaggcctattcgaggcattcaac- 30097250  T
Q  304 ttcttctgcgcctcttggattaaaggtttcttccat 339  Q
      ||||||||||||||||||||||||||||||||||    
T  30097251 --cttctgcgcctcttggattaaaggtttcttccat 30097284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 65 - 105
Target Start/End: Original strand, 30094103 - 30094143
Alignment:
Q  65 aactactctcgatggtcccttcatattgcaggtttcaattt 105  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  30094103 aactactctcgatggttccttcatattgcaggtttcaattt 30094143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 65 - 105
Target Start/End: Complemental strand, 20013249 - 20013209
Alignment:
Q  65 aactactctcgatggtcccttcatattgcaggtttcaattt 105  Q
    |||||||||| | ||||||||||||||||||||||||||||    
T  20013249 aactactctcaaaggtcccttcatattgcaggtttcaattt 20013209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 465 - 493
Target Start/End: Complemental strand, 20013171 - 20013143
Alignment:
Q  465 gtattgggaggaggattagttgatgatga 493  Q
    |||||||||||||||||||||||||||||    
T  20013171 gtattgggaggaggattagttgatgatga 20013143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0046 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: scaffold0046
Description:

Target: scaffold0046; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 204 - 330
Target Start/End: Complemental strand, 87668 - 87545
Alignment:
Q  204 ctccacggaaaggtaggatgttgacgttgtcaatgaccgatggtgttaataaagtctttggagtagagaactacttcaggcctattgaagacattcaacc 303  Q
    |||||||| | ||||||||||||| ||||||||||||||||||||||  |||| ||| |||| |||||| ||||   |||||||||  || |||||||||    
T  87668 ctccacgggatggtaggatgttgatgttgtcaatgaccgatggtgttcgtaaaatctatggaatagagacctaccggaggcctattctagccattcaacc 87569  T
Q  304 ttcttctgcgcctcttggattaaaggt 330  Q
    |||||   |||||||||||||||||||    
T  87568 ttctt---cgcctcttggattaaaggt 87545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0046; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 380 - 493
Target Start/End: Complemental strand, 87471 - 87355
Alignment:
Q  380 agggatctattgctacttgtaggtcaaattctctaatgtaaccgtgtccaaaggatgtttctggatgcttcctgaaaatactatagtatt---gggagga 476  Q
    ||||||||||||||||||||||||||||||| |||||||||  | |  || ||||  ||||| | |||||| |||||||| |  ||||||   |||||||    
T  87471 agggatctattgctacttgtaggtcaaattcactaatgtaagtgcgcacacaggaattttcttgctgcttcgtgaaaatattgaagtattggggggagga 87372  T
Q  477 ggattagttgatgatga 493  Q
    |||||||||||||||||    
T  87371 ggattagttgatgatga 87355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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