View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17304_high_11 (Length: 379)
Name: NF17304_high_11
Description: NF17304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17304_high_11 |
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Alignment Details
Target: chr8 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 11 - 266
Target Start/End: Complemental strand, 35967779 - 35967488
Alignment:
| Q |
11 |
gagatgaatggaggaatagagatgtgaaatgaaaattaaaattataaggtatct----------------acttaaattagtggtcattttcaaccatta |
94 |
Q |
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| T |
35967779 |
gagatgaatggaggaatagagatgtgaaatgaaaattaaaattataaggtatcttaaatgtgtggcaactacttaaattagtggtcattttcaaccatta |
35967680 |
T |
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| Q |
95 |
atagagggata--------------------tttttccagtatatgtatgtaagagagaaaaggaattttgttgtgtttgaaaaatattgtgacagaaga |
174 |
Q |
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| T |
35967679 |
atagagggatagaaatcccctcccgtcactatttttccagtatatgtatgtaagagagagaaggaattttgttgtgtttgaaaaatattgtgacagaaga |
35967580 |
T |
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| Q |
175 |
gaagatgcaaccacaaccagactcatgtgctacttttctctaaaataaagtttttattataataaactctaattgcaatttatcacgtgact |
266 |
Q |
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| T |
35967579 |
gaagatgcaaccacaaccagactgatgtgctacttttctcaaacataaagtttttattataataaactctaattgcaatttgtcacgtgact |
35967488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 277 - 373
Target Start/End: Complemental strand, 35967280 - 35967184
Alignment:
| Q |
277 |
atgcacgtggaaaatgttgaatgatcaatcaataaacacacattccataactacagcctttcgctttcagctttgtattctttttcttgtgttataa |
373 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35967280 |
atgcacgtggaaaatgttgaatgatcaatcaataaacacacattccaaaactacagcctttcgctttcagctttgtattctttttcttgtgttataa |
35967184 |
T |
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