View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17304_high_13 (Length: 326)
Name: NF17304_high_13
Description: NF17304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17304_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 10 - 311
Target Start/End: Complemental strand, 40220428 - 40220127
Alignment:
| Q |
10 |
acatcatcatgacacttttagtttaaacatacatacatatagtaattgtaaataagaagagaaaagagtatataccttgctgctgcagattgtgatgata |
109 |
Q |
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| T |
40220428 |
acatcatcatgacacttttagtttacacatacatacatatagtaagtgtaaataagaagagaaaagagtatataccttgctgccgcagattgtgatgata |
40220329 |
T |
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| Q |
110 |
ttgtgaaaataaatcattgccaccatgaatgcggtttaaggaaggagttatagttgaagtgttgttaggagaagtagtagggactgggactggtcttgga |
209 |
Q |
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| T |
40220328 |
ttgtgaaaataaatcattgccaccatgaatgcggtttaaggaaggagttatagttgaagtgttgttaggagaagtagtagggactaggactggtcttggc |
40220229 |
T |
|
| Q |
210 |
atgagaggccttagtttccttccactgaatggataatcagccatgttgaactcaccaccttcattgtaacccaccatccacatgttgtcaactagggctt |
309 |
Q |
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| T |
40220228 |
atgagaggccttagtttccttccacagaatggataatcagccatgttgaactcaccaccttcattgtaacccaccatccacatgttgtcaactaggcctt |
40220129 |
T |
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| Q |
310 |
tt |
311 |
Q |
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| T |
40220128 |
tt |
40220127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 15 - 311
Target Start/End: Original strand, 45305089 - 45305381
Alignment:
| Q |
15 |
atcatgacacttttagtttaaacatacatacatatagtaattgtaaataagaagagaaaagagtatataccttgctgctgcagattgtgatgatattgtg |
114 |
Q |
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| T |
45305089 |
atcatgacacttttagtttaaacat----acatatagtaagtgtaaataagaagagaaaagagtatataccttgctgctgcagattatgatgatactgtg |
45305184 |
T |
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| Q |
115 |
aaaataaatcattgccaccatgaatgcggtttaaggaaggagttatagttgaagtgttgttaggagaagtagtagggactgggactggtcttggaatgag |
214 |
Q |
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| T |
45305185 |
aaaataaatcattgccaccatgaatgcggtttaaggaaggagttatagttgaagtgttgttaggagaagtagtagggactgggactggtcttggaatgag |
45305284 |
T |
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| Q |
215 |
aggccttagtttccttccactgaatggataatcagccatgttgaactcaccaccttcattgtaacccaccatccacatgttgtcaactagggctttt |
311 |
Q |
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| T |
45305285 |
aggccttagtttccttccactgaatggataatcagccatgttgaactcaccaccttcattgtaacccaccatccacatgttgtcaactagggctttt |
45305381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 10 - 311
Target Start/End: Original strand, 40005118 - 40005425
Alignment:
| Q |
10 |
acatcatcatgacacttttagtttaaacatacatacatatagtaattgtaaataagaagagaaaagagtatataccttgctgctgcagattgtgatgata |
109 |
Q |
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||||||||||||||||||||||||| |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40005118 |
acatcatcatgacacttttagtttacacatacatacatatggtaagtgtaaataagaagagaaaagagtatataccttgctgctgcagattgtgatgata |
40005217 |
T |
|
| Q |
110 |
ttgtgaaaataaatcattgccaccatgaatgcggtttaaggaaggagttatagttgaagtgttgttaggagaagtagtagggac------tgggactggt |
203 |
Q |
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| T |
40005218 |
ttgtgaaaataaatcattgccaccatgaatgcggtttaaggaaggagttatagttgaagtgttgttaggagaagtagtagggactgggattgggactggt |
40005317 |
T |
|
| Q |
204 |
cttggaatgagaggccttagtttccttccactgaatggataatcagccatgttgaactcaccaccttcattgtaacccaccatccacatgttgtcaacta |
303 |
Q |
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|||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
40005318 |
cttgacatgagaggccttagtttccttccacataatggataatcagccatgttgaactcaccaccttcactgtaacccaccatccacatgttgtcaacta |
40005417 |
T |
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| Q |
304 |
gggctttt |
311 |
Q |
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|| ||||| |
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| T |
40005418 |
ggcctttt |
40005425 |
T |
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