View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17304_high_16 (Length: 273)

Name: NF17304_high_16
Description: NF17304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17304_high_16
NF17304_high_16
[»] chr5 (6 HSPs)
chr5 (13-258)||(6784457-6784713)
chr5 (72-255)||(6782507-6782690)
chr5 (13-52)||(6775572-6775611)
chr5 (13-52)||(17491386-17491425)
chr5 (13-45)||(18915753-18915785)
chr5 (13-45)||(34367077-34367109)
[»] chr8 (1 HSPs)
chr8 (13-47)||(33863616-33863650)
[»] chr4 (3 HSPs)
chr4 (13-45)||(32116342-32116374)
chr4 (13-45)||(41128265-41128297)
chr4 (13-45)||(55048404-55048436)
[»] chr3 (2 HSPs)
chr3 (13-45)||(33161758-33161790)
chr3 (13-45)||(41876081-41876113)
[»] chr2 (2 HSPs)
chr2 (13-45)||(7962257-7962289)
chr2 (13-45)||(12793941-12793973)
[»] chr1 (1 HSPs)
chr1 (13-45)||(29579117-29579149)


Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 13 - 258
Target Start/End: Complemental strand, 6784713 - 6784457
Alignment:
Q  13 agaaggttgcgtgttcgattcacgtcaggttcacaatttggttttttattccca---------atttttcttgaaagtaatatgggaaaatatattttga 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||    
T  6784713 agaaggttgcgtgttcgattcacgtcaggttcacaatttggttttttattcccattattccctatttttcttgaaagtaatatgggaaaatatattttga 6784614  T
Q  104 ctattgaaaccttctaaactatagagaattttgataaaaactcataagcatctccctaatagtttaatcatcat--acactcaattgtcattgtcctctt 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  6784613 ctattgaaaccttctaaactatagagaattttgataaaaactcataagcatctccctaatagtttaatcatcatacacactcaattgtcattgtcctctt 6784514  T
Q  202 taagtgtgatagatagttgattgttggaaaaatctagtgttcatgacttcatgtact 258  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  6784513 taagtgtgatagatagttgattgttggaaaaatctagtgttcatgatttcatgtact 6784457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 72 - 255
Target Start/End: Original strand, 6782507 - 6782690
Alignment:
Q  72 tcttgaaagtaatatgggaaaatatattttgactattgaaaccttctaaactatagagaattttgataaaaactcataagcatctccctaatagtttaat 171  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  6782507 tcttgaaagtaatatgggaaaatatattttgactattgaaaccttctaaactatagagaattttgataaaaactcataagcttctccctaatagtttaat 6782606  T
Q  172 catcatacactcaattgtcattgtcctctttaagtgtgatagatagttgattgttggaaaaatctagtgttcatgacttcatgt 255  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  6782607 catcatacactcaattgtcattgtcctctttaagtgtgatagatagttgattgttgaaaaaatctagtgttcatgacttcatgt 6782690  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 52
Target Start/End: Complemental strand, 6775611 - 6775572
Alignment:
Q  13 agaaggttgcgtgttcgattcacgtcaggttcacaatttg 52  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  6775611 agaaggttgcgtgttcgattcacgtcaggttcacattttg 6775572  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 52
Target Start/End: Original strand, 17491386 - 17491425
Alignment:
Q  13 agaaggttgcgtgttcgattcacgtcaggttcacaatttg 52  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  17491386 agaaggttgcgtgttcgattcacgtcaggttcacattttg 17491425  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 18915753 - 18915785
Alignment:
Q  13 agaaggttgcgtgttcgattcacgtcaggttca 45  Q
    |||||||||||||||||||||||||| ||||||    
T  18915753 agaaggttgcgtgttcgattcacgtcgggttca 18915785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 34367109 - 34367077
Alignment:
Q  13 agaaggttgcgtgttcgattcacgtcaggttca 45  Q
    ||||||||||||||||||||||| |||||||||    
T  34367109 agaaggttgcgtgttcgattcacatcaggttca 34367077  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 47
Target Start/End: Original strand, 33863616 - 33863650
Alignment:
Q  13 agaaggttgcgtgttcgattcacgtcaggttcaca 47  Q
    |||||||||||||||||||||||||||||||||||    
T  33863616 agaaggttgcgtgttcgattcacgtcaggttcaca 33863650  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 32116342 - 32116374
Alignment:
Q  13 agaaggttgcgtgttcgattcacgtcaggttca 45  Q
    |||||||||||||||||||||||||||||||||    
T  32116342 agaaggttgcgtgttcgattcacgtcaggttca 32116374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 41128297 - 41128265
Alignment:
Q  13 agaaggttgcgtgttcgattcacgtcaggttca 45  Q
    |||||||||||||||||||||||||| ||||||    
T  41128297 agaaggttgcgtgttcgattcacgtcgggttca 41128265  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 55048436 - 55048404
Alignment:
Q  13 agaaggttgcgtgttcgattcacgtcaggttca 45  Q
    |||||||||||||||||||||||||| ||||||    
T  55048436 agaaggttgcgtgttcgattcacgtcgggttca 55048404  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 33161758 - 33161790
Alignment:
Q  13 agaaggttgcgtgttcgattcacgtcaggttca 45  Q
    |||||||||||||||||||||||||||||||||    
T  33161758 agaaggttgcgtgttcgattcacgtcaggttca 33161790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 41876113 - 41876081
Alignment:
Q  13 agaaggttgcgtgttcgattcacgtcaggttca 45  Q
    |||||||||||||||||||||| ||||||||||    
T  41876113 agaaggttgcgtgttcgattcatgtcaggttca 41876081  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 7962289 - 7962257
Alignment:
Q  13 agaaggttgcgtgttcgattcacgtcaggttca 45  Q
    |||||||||||||||||||||||||||||||||    
T  7962289 agaaggttgcgtgttcgattcacgtcaggttca 7962257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 12793941 - 12793973
Alignment:
Q  13 agaaggttgcgtgttcgattcacgtcaggttca 45  Q
    |||||||||||||||||||||||||||||||||    
T  12793941 agaaggttgcgtgttcgattcacgtcaggttca 12793973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 29579149 - 29579117
Alignment:
Q  13 agaaggttgcgtgttcgattcacgtcaggttca 45  Q
    |||||||||||||||||||||||||||||||||    
T  29579149 agaaggttgcgtgttcgattcacgtcaggttca 29579117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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