View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17304_high_19 (Length: 250)
Name: NF17304_high_19
Description: NF17304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17304_high_19 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 38 - 250
Target Start/End: Original strand, 8038601 - 8038813
Alignment:
| Q |
38 |
aagttattaggtaaaatacttggatgaaggcctccaatgattatgtgttacctttctatagtgtctcaataagttcttcacaaaaagatgagtaaaagaa |
137 |
Q |
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| T |
8038601 |
aagttattaggtaaaatacttagatgaaggcctccaatgattatgtgttacctttctatagtgtctcaataagttcttcacaaaaagatgagtaaaagaa |
8038700 |
T |
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| Q |
138 |
gagctcaatgcataagaaatgaatccaatgatacttggaaaaaagctcctaaaattctctatagctttttctttattagtctattggaaattcttttgga |
237 |
Q |
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| T |
8038701 |
gagctcaatgcataagaaatgaatccaatgatacttggaaaaaagctcctaaaattctctatagctttttctttattagtctattggaaattcttctgga |
8038800 |
T |
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| Q |
238 |
catcgtatttaat |
250 |
Q |
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||||||||||||| |
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| T |
8038801 |
catcgtatttaat |
8038813 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 135 - 212
Target Start/End: Complemental strand, 8414416 - 8414340
Alignment:
| Q |
135 |
gaagagctcaatgcataagaaatgaatccaatgatacttggaaaaaagctcctaaaattctctatagctttttcttta |
212 |
Q |
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| T |
8414416 |
gaagagctcaatgcataagaaatgaatccaatgatactt-gaaaaaaactcctaaaattctccatagctttttcttta |
8414340 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 118 - 232
Target Start/End: Complemental strand, 31495901 - 31495789
Alignment:
| Q |
118 |
caaaaagatgagtaaaagaagagctcaatgcataagaaatgaatccaatgatacttggaaaaaagctcctaaaattctctatagctttttctttattagt |
217 |
Q |
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| T |
31495901 |
caaaaagatgattgaaagaagagctgcttgcataagaaatgaatcccataatacttgaaaaaaa--tcctaaaattctccattgatttttctgtattagt |
31495804 |
T |
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| Q |
218 |
ctattggaaattctt |
232 |
Q |
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| T |
31495803 |
ctattggaaattctt |
31495789 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 132 - 250
Target Start/End: Complemental strand, 40844350 - 40844234
Alignment:
| Q |
132 |
aaagaagagctcaatgcataagaaatgaatccaatgatacttggaaaaaagctcctaaaattctctatagctttttctttattagtctattggaaattct |
231 |
Q |
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||||||||||| |||||||||||| |||||||||||||||||| |||||| |||||| |||||| | | ||| || ||||||||||||||||||||| |
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| T |
40844350 |
aaagaagagctgaatgcataagaagtgaatccaatgatacttgaaaaaaa--tcctaatattctccagtgatttatcagtattagtctattggaaattct |
40844253 |
T |
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| Q |
232 |
tttggacatcgtatttaat |
250 |
Q |
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| ||| ||| ||| ||||| |
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| T |
40844252 |
tatgggcatagtacttaat |
40844234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 132 - 236
Target Start/End: Original strand, 31325229 - 31325331
Alignment:
| Q |
132 |
aaagaagagctcaatgcataagaaatgaatccaatgatacttggaaaaaagctcctaaaattctctatagctttttctttattagtctattggaaattct |
231 |
Q |
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||||||||||| |||||||||||||||| |||||||||||||| |||||| ||| ||||||| || ||||| ||| || |||||||||||||||| |
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| T |
31325229 |
aaagaagagcttaatgcataagaaatgagtccaatgatacttgataaaaag-tcc-gaaattcttcattgctttatctgaatatgtctattggaaattct |
31325326 |
T |
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| Q |
232 |
tttgg |
236 |
Q |
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||||| |
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| T |
31325327 |
tttgg |
31325331 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 132 - 174
Target Start/End: Original strand, 31372660 - 31372702
Alignment:
| Q |
132 |
aaagaagagctcaatgcataagaaatgaatccaatgatacttg |
174 |
Q |
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| T |
31372660 |
aaagaagagcttaatgcataagaaatgagtccaatgatacttg |
31372702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 181
Target Start/End: Complemental strand, 31477131 - 31477069
Alignment:
| Q |
119 |
aaaaagatgagtaaaagaagagctcaatgcataagaaatgaatccaatgatacttggaaaaaa |
181 |
Q |
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|||||||||| ||||||||||||| | |||||||||| ||||| |||||||||| |||||| |
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| T |
31477131 |
aaaaagatgattaaaagaagagctacttacataagaaatcaatccgatgatacttgaaaaaaa |
31477069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 114
Target Start/End: Complemental strand, 31496609 - 31496566
Alignment:
| Q |
70 |
tccaatgattatgtgttacctttctatagtgtctcaataagttct |
114 |
Q |
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| T |
31496609 |
tccaatgattatgtgt-acctttgtatagtgtctcaataacttct |
31496566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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