View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17304_high_22 (Length: 237)
Name: NF17304_high_22
Description: NF17304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17304_high_22 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 23 - 221
Target Start/End: Complemental strand, 3592342 - 3592144
Alignment:
| Q |
23 |
gactcctccattattttaaactcttcatcaccatagttatatccattagttgaccttaaagtgcttgagtttgagaatgggaatataaagctttggtttt |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3592342 |
gactcctccattattttaaactcttcatcaccatagttatatccattatttgaccttaaagtgcttgagtttgagaatgggaatataaagctttggtttt |
3592243 |
T |
|
| Q |
123 |
gatgaaagggcatagatgaactcagaaacatgccattaccaataccaaactcttcattattaccttctgattgatctttggtactgattagaatctgtg |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
3592242 |
gatgaaagggcatagatgaactcagaaacatgccattaccaataccaaactcttcattattaccttctgattgatctttggtactgattagattctgtg |
3592144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University