View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17304_high_4 (Length: 425)

Name: NF17304_high_4
Description: NF17304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17304_high_4
NF17304_high_4
[»] chr8 (14 HSPs)
chr8 (19-425)||(5843113-5843518)
chr8 (19-425)||(5849855-5850260)
chr8 (43-229)||(5887493-5887678)
chr8 (335-425)||(5921224-5921314)
chr8 (335-425)||(5960381-5960471)
chr8 (335-425)||(5887252-5887342)
chr8 (335-425)||(5949116-5949206)
chr8 (335-425)||(5984644-5984734)
chr8 (28-227)||(5960544-5960734)
chr8 (86-227)||(5921386-5921524)
chr8 (86-227)||(5984806-5984944)
chr8 (86-227)||(5949278-5949416)
chr8 (362-408)||(9621943-9621989)
chr8 (117-167)||(41351576-41351626)
[»] chr2 (2 HSPs)
chr2 (95-222)||(42789068-42789192)
chr2 (356-425)||(42788994-42789063)
[»] chr7 (1 HSPs)
chr7 (352-417)||(45676080-45676145)
[»] chr3 (2 HSPs)
chr3 (357-417)||(34626700-34626760)
chr3 (362-412)||(44674039-44674089)
[»] chr5 (1 HSPs)
chr5 (117-174)||(2590612-2590669)


Alignment Details
Target: chr8 (Bit Score: 333; Significance: 0; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 19 - 425
Target Start/End: Complemental strand, 5843518 - 5843113
Alignment:
Q  19 attagatatatatttgtaattttgagacttattgatcaaactaaggagaaaagaaaacaagacatcaatcatggcacatcactcttgctgtagcaaggag 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5843518 attagatatatatttgtaattttgagacttattgatcaaactaaggagaaaagaaaacaagacatcaatcatggcacatcactcttgctgtagcaaggag 5843419  T
Q  119 aaggtcaacagaggactatggtcacctgaagaagatgaaaaactcatcaaatacatcacaacttatggacaagattgctgctggagttctgtcccaaaac 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5843418 aaggtcaacagaggactatggtcacctgaagaagatgaaaaactcatcaaatacatcacaacttatggacaagattgctgctggagttctgtcccaaaac 5843319  T
Q  219 ttgctggtactnnnnnnnttcttaaccactttac-nnnnnnnnnaagtgcactttactatttcattaagtatatatagttccctaaaaaatatatcttat 317  Q
    |||||||||||       ||||||||||||||||          |||||||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  5843318 ttgctggtactaaaaaaattcttaaccactttacttttttttttaagtgcactttactatttcattaag--tatatagttccctaaaaaatatatcttat 5843221  T
Q  318 tatatggttcatttatttatatcatgatgtgtctaggtctgcagagatgtgggaaaagttgtagattaagatggataaattatctaagacctgatttgaa 417  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||    
T  5843220 tatatggttcatttatttatatcatgatgtgtctaggtctgcagagatgtggaaaaagttgtagattaagatggataaattatctaagacctgatttaaa 5843121  T
Q  418 acgtggaa 425  Q
    ||||||||    
T  5843120 acgtggaa 5843113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 19 - 425
Target Start/End: Complemental strand, 5850260 - 5849855
Alignment:
Q  19 attagatatatatttgtaattttgagacttattgatcaaactaaggagaaaagaaaacaagacatcaatcatggcacatcactcttgctgtagcaaggag 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5850260 attagatatatatttgtaattttgagacttattgatcaaactaaggagaaaagaaaacaagacatcaatcatggcacatcactcttgctgtagcaaggag 5850161  T
Q  119 aaggtcaacagaggactatggtcacctgaagaagatgaaaaactcatcaaatacatcacaacttatggacaagattgctgctggagttctgtcccaaaac 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5850160 aaggtcaacagaggactatggtcacctgaagaagatgaaaaactcatcaaatacatcacaacttatggacaagattgctgctggagttctgtcccaaaac 5850061  T
Q  219 ttgctggtactnnnnnnnttcttaaccactttac-nnnnnnnnnaagtgcactttactatttcattaagtatatatagttccctaaaaaatatatcttat 317  Q
    |||||||||||       ||||||||||||||||          |||||||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  5850060 ttgctggtactaaaaaaattcttaaccactttacttttttttttaagtgcactttactatttcattaag--tatatagttccctaaaaaatatatcttat 5849963  T
Q  318 tatatggttcatttatttatatcatgatgtgtctaggtctgcagagatgtgggaaaagttgtagattaagatggataaattatctaagacctgatttgaa 417  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  5849962 tatatggttcatttatttatatcatgatatgtctaggtctgcagagatgtggaaaaagttgtagattaagatggataaattatctaagacctgatttgaa 5849863  T
Q  418 acgtggaa 425  Q
    ||||||||    
T  5849862 acgtggaa 5849855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 43 - 229
Target Start/End: Complemental strand, 5887678 - 5887493
Alignment:
Q  43 agacttattgatcaaactaaggagaaaagaaaacaagacatcaatcatggcacatcactcttgctgtagcaaggagaaggtcaacagaggactatggtca 142  Q
    ||||||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  5887678 agacttattcatcaaactaaggagaaaagaaa-caagacatcaatcatgggacatcactcttgctgtaacaaggagaaggtcaacagaggactatggtca 5887580  T
Q  143 cctgaagaagatgaaaaactcatcaaatacatcacaacttatggacaagattgctgctggagttctgtcccaaaacttgctggtact 229  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||    
T  5887579 cctgaagaagatgaaaagctcatcaaatacatcacaacttatggacaagattgctgctggagctctgtaccaaaacttgctggtact 5887493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 335 - 425
Target Start/End: Complemental strand, 5921314 - 5921224
Alignment:
Q  335 tatatcatgatgtgtctaggtctgcagagatgtgggaaaagttgtagattaagatggataaattatctaagacctgatttgaaacgtggaa 425  Q
    ||||||||||||||| ||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  5921314 tatatcatgatgtgtgtaggtctgcagagatgtggaaagagttgcagattaagatggataaattatctaagacctgatttgaaacgtggaa 5921224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 335 - 425
Target Start/End: Complemental strand, 5960471 - 5960381
Alignment:
Q  335 tatatcatgatgtgtctaggtctgcagagatgtgggaaaagttgtagattaagatggataaattatctaagacctgatttgaaacgtggaa 425  Q
    ||||||||||||||| |||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5960471 tatatcatgatgtgtgtaggtctggagagatgtggaaagagttgtagattaagatggataaattatctaagacctgatttgaaacgtggaa 5960381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 335 - 425
Target Start/End: Complemental strand, 5887342 - 5887252
Alignment:
Q  335 tatatcatgatgtgtctaggtctgcagagatgtgggaaaagttgtagattaagatggataaattatctaagacctgatttgaaacgtggaa 425  Q
    ||||||||||||||| |||||||||||||||| || || ||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  5887342 tatatcatgatgtgtgtaggtctgcagagatgcggaaagagttgcagattaagatggataaattatctaagacctgatttgaaacgtggaa 5887252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 335 - 425
Target Start/End: Complemental strand, 5949206 - 5949116
Alignment:
Q  335 tatatcatgatgtgtctaggtctgcagagatgtgggaaaagttgtagattaagatggataaattatctaagacctgatttgaaacgtggaa 425  Q
    ||||||||||| ||| ||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  5949206 tatatcatgatatgtgtaggtctgcagagatgtggaaagagttgaagattaagatggataaattatctaagacctgatttgaaacgtggaa 5949116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 335 - 425
Target Start/End: Complemental strand, 5984734 - 5984644
Alignment:
Q  335 tatatcatgatgtgtctaggtctgcagagatgtgggaaaagttgtagattaagatggataaattatctaagacctgatttgaaacgtggaa 425  Q
    ||||||||||| ||| ||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  5984734 tatatcatgatatgtgtaggtctgcagagatgtggaaagagttgcagattaagatggataaattatctaagacctgatttgaaacgtggaa 5984644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 28 - 227
Target Start/End: Complemental strand, 5960734 - 5960544
Alignment:
Q  28 atatttgtaattttgagacttattgatcaaactaaggagaaaagaaaacaagacatcaatcatggcacatcactcttgctgtagcaaggagaaggtcaac 127  Q
    |||||||||||||  |||||| ||||||||||||||||||||||||| | ||||||||    ||  |||||| ||||| || | |||  ||||||| ||     
T  5960734 atatttgtaatttc-agactttttgatcaaactaaggagaaaagaaa-ctagacatca----tgagacatcattcttgttgcaacaaacagaaggttaaa 5960641  T
Q  128 agaggactatggtcacctgaagaagatgaaaaactcatcaaatacatcacaacttatggacaagattgctgctggagttctgtcccaaaacttgctggta 227  Q
    |||||| ||||||||||||||||||||||||||||||||||||| || ||||| |||||||   || | || ||||||||||| ||||||||||||||||    
T  5960640 agaggattatggtcacctgaagaagatgaaaaactcatcaaatatattacaacatatggac---atggttgttggagttctgttccaaaacttgctggta 5960544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 86 - 227
Target Start/End: Complemental strand, 5921524 - 5921386
Alignment:
Q  86 atcatggcacatcactcttgctgtagcaaggagaaggtcaacagaggactatggtcacctgaagaagatgaaaaactcatcaaatacatcacaacttatg 185  Q
    ||||||| |||||||||||| || | |||  ||||||| || |||||| ||||||||||||||||||||||||||||||||||||| || ||||| ||||    
T  5921524 atcatgggacatcactcttgttgcaacaaacagaaggttaaaagaggattatggtcacctgaagaagatgaaaaactcatcaaatatattacaacatatg 5921425  T
Q  186 gacaagattgctgctggagttctgtcccaaaacttgctggta 227  Q
    |||   || | || ||||||||||| ||||||||||||||||    
T  5921424 gac---atggttgttggagttctgttccaaaacttgctggta 5921386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 86 - 227
Target Start/End: Complemental strand, 5984944 - 5984806
Alignment:
Q  86 atcatggcacatcactcttgctgtagcaaggagaaggtcaacagaggactatggtcacctgaagaagatgaaaaactcatcaaatacatcacaacttatg 185  Q
    ||||||| |||||||||||| || | |||  ||||||| || |||||| ||||||||||||||||||||||||||||||||||||| || ||||| ||||    
T  5984944 atcatgggacatcactcttgttgcaacaaacagaaggttaaaagaggattatggtcacctgaagaagatgaaaaactcatcaaatatattacaacatatg 5984845  T
Q  186 gacaagattgctgctggagttctgtcccaaaacttgctggta 227  Q
    |||   || | || ||||||||||| ||||||||||||||||    
T  5984844 gac---atggttgttggagttctgttccaaaacttgctggta 5984806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 86 - 227
Target Start/End: Complemental strand, 5949416 - 5949278
Alignment:
Q  86 atcatggcacatcactcttgctgtagcaaggagaaggtcaacagaggactatggtcacctgaagaagatgaaaaactcatcaaatacatcacaacttatg 185  Q
    ||||||| |||||||||||| || | |||  ||||||| || |||||| ||||||||||||||||||||||||||||||||||||| |  ||||| ||||    
T  5949416 atcatgggacatcactcttgttgcaacaaacagaaggttaaaagaggattatggtcacctgaagaagatgaaaaactcatcaaatatagtacaacatatg 5949317  T
Q  186 gacaagattgctgctggagttctgtcccaaaacttgctggta 227  Q
    |||   || | || ||||||||||| ||||||||||||||||    
T  5949316 gac---atggttgttggagttctgttccaaaacttgctggta 5949278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 362 - 408
Target Start/End: Original strand, 9621943 - 9621989
Alignment:
Q  362 agatgtgggaaaagttgtagattaagatggataaattatctaagacc 408  Q
    ||||||||||||||||||||| | |||||||| |||||||| |||||    
T  9621943 agatgtgggaaaagttgtagacttagatggatgaattatcttagacc 9621989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 117 - 167
Target Start/End: Complemental strand, 41351626 - 41351576
Alignment:
Q  117 agaaggtcaacagaggactatggtcacctgaagaagatgaaaaactcatca 167  Q
    ||||||| || ||||| || ||||| |||||||||||||||||||||||||    
T  41351626 agaaggttaagagaggtctttggtcccctgaagaagatgaaaaactcatca 41351576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 95 - 222
Target Start/End: Complemental strand, 42789192 - 42789068
Alignment:
Q  95 catcactcttgctgtagcaaggagaaggtcaacagaggactatggtcacctgaagaagatgaaaaactcatcaaatacatcacaacttatggacaagatt 194  Q
    |||||||||||||| |  ||  ||||||| || ||||||||||||||||| ||||||||||||||||||||||| |||||||| | ||||||||   ||     
T  42789192 catcactcttgctgcaataaacagaaggtgaaaagaggactatggtcaccagaagaagatgaaaaactcatcaactacatcactaattatggac---atg 42789096  T
Q  195 gctgctggagttctgtcccaaaacttgc 222  Q
    | || |||||||||||||| ||||||||    
T  42789095 gttgttggagttctgtccctaaacttgc 42789068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 356 - 425
Target Start/End: Complemental strand, 42789063 - 42788994
Alignment:
Q  356 ctgcagagatgtgggaaaagttgtagattaagatggataaattatctaagacctgatttgaaacgtggaa 425  Q
    |||||||||||||| |||||||| || || ||||||||||||||| ||||||||||||||||||||||||    
T  42789063 ctgcagagatgtggaaaaagttgcaggttgagatggataaattatttaagacctgatttgaaacgtggaa 42788994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 352 - 417
Target Start/End: Complemental strand, 45676145 - 45676080
Alignment:
Q  352 aggtctgcagagatgtgggaaaagttgtagattaagatggataaattatctaagacctgatttgaa 417  Q
    |||| ||||||| |||||||| ||||||||||| |||||||||||||||||||| |||||||||||    
T  45676145 aggtttgcagaggtgtgggaagagttgtagattgagatggataaattatctaaggcctgatttgaa 45676080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 357 - 417
Target Start/End: Complemental strand, 34626760 - 34626700
Alignment:
Q  357 tgcagagatgtgggaaaagttgtagattaagatggataaattatctaagacctgatttgaa 417  Q
    |||| |||||||| || ||||||||||| |||||||| || ||||| ||||||||||||||    
T  34626760 tgcaaagatgtggaaagagttgtagattgagatggatcaactatctgagacctgatttgaa 34626700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 362 - 412
Target Start/End: Original strand, 44674039 - 44674089
Alignment:
Q  362 agatgtgggaaaagttgtagattaagatggataaattatctaagacctgat 412  Q
    |||||||| || ||||| ||||| |||||||||||||| ||||||||||||    
T  44674039 agatgtggcaagagttgcagattgagatggataaattacctaagacctgat 44674089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 174
Target Start/End: Original strand, 2590612 - 2590669
Alignment:
Q  117 agaaggtcaacagaggactatggtcacctgaagaagatgaaaaactcatcaaatacat 174  Q
    ||||||| || ||||| || |||||||||||||||||||| |||||||| | ||||||    
T  2590612 agaaggttaagagaggcctttggtcacctgaagaagatgagaaactcattagatacat 2590669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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