View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17304_high_7 (Length: 401)
Name: NF17304_high_7
Description: NF17304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17304_high_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 17 - 384
Target Start/End: Complemental strand, 48922041 - 48921686
Alignment:
| Q |
17 |
taaagaatattaaactaaggcgcttggtgatgcaataatgtacacaattatactagcttatgttaattccagtgcagatgctttggcaaatatggattgt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48922041 |
taaagaatattaaactaaggcgcttggtgatgcaataatgtacacaattatactagcttatgttaattccagtgcagatgctttggcaaatatggattgt |
48921942 |
T |
|
| Q |
117 |
gttgtgttggaggtatgacttgtaatggaggctttcttttgattctatatgagtaataatatctcattcagattagttctttttatttaactaattgtta |
216 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48921941 |
gttgtgttggaggtatgacttgtgatggaggctttcttttgattctatatgagt---aatatctcattcagattagttctttttatttaactaattgtta |
48921845 |
T |
|
| Q |
217 |
agctttctttcttggttttggccctcatgtttgatnnnnnnnnnnnnnnnnnnnnnncatatttttatctataccattgtataaaaactcaaaagttgac |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48921844 |
agctttctttcttggttttggccctcatgtttgat---------aaaaaaaaaaaaacatatttttatctataccattgtataaaaactcaaaagttgac |
48921754 |
T |
|
| Q |
317 |
tactgataaaattacccttaacaatttaaattaattttaagcgaatggctaacaactgaaggagagta |
384 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48921753 |
tactgataaaattacccttaacaatttaaattaattttaagcgaatggctaacaactgaaggagagta |
48921686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 27 - 118
Target Start/End: Original strand, 48869556 - 48869648
Alignment:
| Q |
27 |
taaactaaggcgcttggtgatgcaataatgtacacaattatactagctt-atgttaattccagtgcagatgctttggcaaatatggattgtgt |
118 |
Q |
| |
|
|||| |||||| ||||||||||||||||||||||||||||||||||||| | ||||||| |||| ||||||||||| ||||||||| |||||| |
|
|
| T |
48869556 |
taaattaaggcacttggtgatgcaataatgtacacaattatactagcttaacgttaattacagttcagatgctttgacaaatatggcttgtgt |
48869648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 24777015 - 24776965
Alignment:
| Q |
20 |
agaatattaaactaaggcgcttggtgatgcaataatgtacacaattatact |
70 |
Q |
| |
|
||||||||||||| ||| |||||| ||| ||||||||||||||||||||| |
|
|
| T |
24777015 |
agaatattaaactgaggtacttggtaatgtaataatgtacacaattatact |
24776965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University