View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17304_low_10 (Length: 381)
Name: NF17304_low_10
Description: NF17304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17304_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 22 - 374
Target Start/End: Complemental strand, 31507996 - 31507644
Alignment:
| Q |
22 |
ggccaatgcacgttttggtcccaaaatatttcattgtctataaaatatcatacaaaatcannnnnnngacgttctcaaatgtaaaatttccacaataaat |
121 |
Q |
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| T |
31507996 |
ggccaatgcacgttttggtcccaaaatatttccttgtctataaaatatcatacagaatcatttttttaacgttctcaaatgtaaaatttccacaataaat |
31507897 |
T |
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| Q |
122 |
tttacaaaaaatgccttgaataatcatttaaaataaagttcatgtttcttgaagtctcaaatctcaagtatctaaagtgcacctcacctgcatgtaagag |
221 |
Q |
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| T |
31507896 |
tgtagaaaaaatgccttgaataatcatttaaaataaagttcatgtttcttgaagtctcaaatctcaagtatctaaagtgcacctcacctgcatgtaaggg |
31507797 |
T |
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| Q |
222 |
taatagagaaatgaataaagtgatagtggccggcaaagcagccacctagatagcattcaaatcagcccatataaatccaaatttttactcccttttctac |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31507796 |
taatagagaaatgaataaagtgatagtggccggcaaagcagccacctagatagcattcaaatcagcccatataaatccaaatttttactcccttttctac |
31507697 |
T |
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| Q |
322 |
aaggattagttgtagtcttctagttttgaaatcaataatttaactttgatgat |
374 |
Q |
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| T |
31507696 |
aaggattagttgtagtcttctagttttgaaatcaataatttaactttgatgat |
31507644 |
T |
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