View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17304_low_12 (Length: 369)
Name: NF17304_low_12
Description: NF17304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17304_low_12 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 20 - 359
Target Start/End: Original strand, 20872214 - 20872553
Alignment:
| Q |
20 |
tagctagcataccattaaaccaagtagaacgtgtatggctaaatcaacactattgggaattgaaaacatgataatttcaatgattttctcatctttgc-a |
118 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
20872214 |
tagctagcataccattaaaacaagtagaacgtgtatggctaaatcaacactattgggaaatgaaaacatgataatttcaatgattttctcatctttgcga |
20872313 |
T |
|
| Q |
119 |
tataatcaacaacctattaatttcagcccattgatattctccaacaagagggttatgatagaaaacctaatttctcatacaatacacttagatgcataca |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20872314 |
tataatcaacaacctattaatttcagcccattgatattctccaacaagagggttatgatagaaaacctaatttctcatacaatacacttagatgcataca |
20872413 |
T |
|
| Q |
219 |
tacccaattgctattgctattaaacaacaaatacatctctatataatcaaattcaagcttaaatagagaacccaccttgacaatttgtgagctacttttc |
318 |
Q |
| |
|
|| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20872414 |
taacca-ttgctattgctattaaacaacaaatacatctctatataatcaaattcaagcttaaatagagaacccaccttgacaatttgtgagctacttttc |
20872512 |
T |
|
| Q |
319 |
ctctaaatctcctttgttctttagcttcttcagtccctttg |
359 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
20872513 |
ctctaaatctcctttgttttttagcttcttcagtccctttg |
20872553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University