View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17304_low_15 (Length: 313)
Name: NF17304_low_15
Description: NF17304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17304_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 274; Significance: 1e-153; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 20 - 301
Target Start/End: Original strand, 2149699 - 2149980
Alignment:
| Q |
20 |
agaggtatatgaacaatataatgaagattgatataaaattgtagaaagatgcacaaagaggttaaccaaagcacatgcatcactctggcaaatttctaca |
119 |
Q |
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| T |
2149699 |
agaggtatatgaacaatataatgaagattgatataaaattgtagaaagatgcacaaagaggttaaccaaagcacatgcatcactcaggcaaatttctaca |
2149798 |
T |
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| Q |
120 |
taaagggcaagtagcattcatcttgagccaaacatctatacaatctgcatggaaatgatgattacattgaggtatacttcttaatgtctccattggtttg |
219 |
Q |
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| T |
2149799 |
taaagggcaagtagcattcatcttgagccaaacatctatacaatctgcatggaaatgatgattacattgaggtatacttcttaatgtctccattggtttg |
2149898 |
T |
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| Q |
220 |
tactcactaagacatatggaacaaacattgtcaatgaatttaggcaattgtccattctctgcaagttgaatctttggatatt |
301 |
Q |
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| T |
2149899 |
tactcactaagacatatggaacaaacattgtcaatgaattttggcaattgtccattctctgcaagttgaatctttggatatt |
2149980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 31 - 301
Target Start/End: Original strand, 2145236 - 2145505
Alignment:
| Q |
31 |
aacaatataatgaagattgatataaaattgtagaaagatgcacaaagaggttaaccaaagcacatgcatcactctggcaaatttctacataaagggcaag |
130 |
Q |
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| T |
2145236 |
aacattataatgaagattgatataaaattgtagagagatgcacaaagagat-aaccaaagcacatgcatcactcaggcaaatttctacataaagggcaag |
2145334 |
T |
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| Q |
131 |
tagcattcatcttgagccaaacatctatacaatctgcatggaaatgatgattacattgaggtatacttcttaatgtctccattggtttgtactcactaag |
230 |
Q |
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| T |
2145335 |
tagcattcatcttgagccaaacatctatacaatctgcatggaaatgatgattacattgaggtatactccttaatgtctccatgggtttgtactcaccaag |
2145434 |
T |
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| Q |
231 |
acatatggaacaaacattgtcaatgaatttaggcaattgtccattctctgcaagttgaatctttggatatt |
301 |
Q |
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||||||||||||||||||||||||| | ||||||||||||||| ||||| | ||||||||||||||||||| |
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| T |
2145435 |
acatatggaacaaacattgtcaatggacttaggcaattgtccactctctactagttgaatctttggatatt |
2145505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 29 - 301
Target Start/End: Original strand, 2140701 - 2140971
Alignment:
| Q |
29 |
tgaacaatataatgaagattgatataaaattgtagaaagatgcacaaagaggttaaccaaagcacatgcatcactctggcaaatttctacataaagggca |
128 |
Q |
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|||||| ||| ||||||||||||||||| ||||||||||| |||||||||| | ||||||||||| |||||||||| ||||||||| ||||||||||||| |
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| T |
2140701 |
tgaacattatgatgaagattgatataaa-ttgtagaaagaggcacaaagagat-aaccaaagcacgtgcatcactcaggcaaatttttacataaagggca |
2140798 |
T |
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| Q |
129 |
agtagcattcatcttgagccaaacatctatacaatctgcatggaaatgatgattacattgaggtatacttcttaatgtctccattggtttgtactcacta |
228 |
Q |
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| T |
2140799 |
agtagcattcatcttgagccaaacatctatacaatctgcatggaaatgatgattacattgaggtatacttcttaatgtctccattggtttgtactcacta |
2140898 |
T |
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| Q |
229 |
agacatatggaacaaacattgtcaatgaatttaggcaattgtccattctctgcaagttgaatctttggatatt |
301 |
Q |
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||||||||||||||||||||||||||| | ||||||||||||||| ||||||| ||||||||||||||||||| |
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| T |
2140899 |
agacatatggaacaaacattgtcaatggacttaggcaattgtccactctctgctagttgaatctttggatatt |
2140971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 163
Target Start/End: Complemental strand, 42004054 - 42003993
Alignment:
| Q |
102 |
ctctggcaaatttctacataaagggcaagtagcattcatcttgagccaaacatctatacaat |
163 |
Q |
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|||||| ||||||| ||| |||||||| |||||||| |||||||||| |||||||||||| |
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| T |
42004054 |
ctctggaaaatttcgacacaaagggcaggtagcatttgtcttgagccatccatctatacaat |
42003993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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