View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17304_low_16 (Length: 301)
Name: NF17304_low_16
Description: NF17304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17304_low_16 |
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| [»] scaffold0012 (4 HSPs) |
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Alignment Details
Target: scaffold0012 (Bit Score: 229; Significance: 1e-126; HSPs: 4)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 11 - 283
Target Start/End: Original strand, 163746 - 164019
Alignment:
| Q |
11 |
ttgtttcataaatatgatgttaacaatgtcaattttttatgcaccagacgaatacttggtttgttggtcctcttagttatgcctccttgttgccagattc |
110 |
Q |
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| T |
163746 |
ttgtttcagaaatatgatgttaacaatgtcaattttttatgcaccagacgaatacttggtttgttggtcctcttagttatgcctccttgttgccagattc |
163845 |
T |
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| Q |
111 |
cagcatgaaagccaattgtatatactgtgacaacgatnnnnnnngggtaataattattattagaaaatgaaaaattacttaattgaagtgacagtaaatt |
210 |
Q |
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| T |
163846 |
cagcatgaaagccaattgtatatattgtgactccgataaagaaagggtaataattattattagaaaatgaaaaattacttaattgaagtgacagtaaatt |
163945 |
T |
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| Q |
211 |
ataaaaaggctgcaagagtattgaaaatagtcac-tttgtatttatcattgcattcgcatggggcaaactttgg |
283 |
Q |
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| T |
163946 |
ataaaaaggctgcaagagtattgaaaatagtcacttttgtatttatcattgcattcgcatggggcaaactttgg |
164019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 157 - 237
Target Start/End: Original strand, 157584 - 157664
Alignment:
| Q |
157 |
gtaataattattattagaaaatgaaaaattacttaattgaagtgacagtaaattataaaaaggctgcaagagtattgaaaa |
237 |
Q |
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| T |
157584 |
gtaataattattattagaaaatgaaaaattagtgaattgatgtgactataaattataaaaaggttgcaagagtattgaaaa |
157664 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 157 - 233
Target Start/End: Original strand, 149543 - 149620
Alignment:
| Q |
157 |
gtaataattattattagaaaa-tgaaaaattacttaattgaagtgacagtaaattataaaaaggctgcaagagtattg |
233 |
Q |
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| T |
149543 |
gtaataattattattaaaaaaatgataaactattgaattgaggtgacaataaattataaaaaggttgcaagagtattg |
149620 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 160 - 226
Target Start/End: Original strand, 174118 - 174185
Alignment:
| Q |
160 |
ataattattattagaaaa-tgaaaaattacttaattgaagtgacagtaaattataaaaaggctgcaag |
226 |
Q |
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| T |
174118 |
ataattattattaaaaaaatgaaaaattactgaattaaagtgataataaattataaaaaggttgcaag |
174185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 155 - 272
Target Start/End: Complemental strand, 34399592 - 34399475
Alignment:
| Q |
155 |
gggtaataattattattagaaaatgaaaaattacttaattgaagtgacagtaaattataaaaaggctgcaagagtattgaaaatagtcactttgtattta |
254 |
Q |
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| T |
34399592 |
gggtaataataattattagaaaatgaaaaaatacttaattgaagtaacaaaaaattataaaaaagatgcaagagtattgaaaatagtcactttgtattta |
34399493 |
T |
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| Q |
255 |
tcattgcattcgcatggg |
272 |
Q |
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| T |
34399492 |
tcattgcattcacatggg |
34399475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 91
Target Start/End: Original strand, 30885012 - 30885076
Alignment:
| Q |
27 |
atgttaacaatgtcaattttttatgcaccagacgaatacttggtttgttggtcctcttagttatg |
91 |
Q |
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| T |
30885012 |
atgttgacaatatgaaatttttatgcaccaaacaaatactaggtttgttggtccttgtagttatg |
30885076 |
T |
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