View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17304_low_19 (Length: 250)
Name: NF17304_low_19
Description: NF17304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17304_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 35048097 - 35048336
Alignment:
| Q |
1 |
catgatcaagagacagaaccaaaagtattaagagaaaacaaaccctgcatttatcataagtatgcacattctgacctacaccatttttgaagcttgatag |
100 |
Q |
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| T |
35048097 |
catgatcaagagacagaaccaaaagtattaagagaaaacaaaccctgcatttatcataagtgtgcacattctgacctacaccatttttgaagcttgatag |
35048196 |
T |
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| Q |
101 |
tttctgcataacacaagatcaataaaccaaccaaccatttagaaatttggaagaacgcaaattttactcggtcaaagtcaaagtcaaattcataggtttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35048197 |
tttctgcataacacaagatcaataaaccaaccaaccatttagaaatttggaagaacacaaattttactcggtcaaagtcaaagtcaaattcataggtttc |
35048296 |
T |
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| Q |
201 |
tgaattttatcaaagaaaaaagaacatatttacctctctg |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
35048297 |
tgaattttatcaaagaaaaaagaacatatttacctctctg |
35048336 |
T |
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