View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17304_low_2 (Length: 482)

Name: NF17304_low_2
Description: NF17304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17304_low_2
NF17304_low_2
[»] chr8 (4 HSPs)
chr8 (325-472)||(7319336-7319484)
chr8 (31-65)||(16226928-16226962)
chr8 (23-121)||(33925997-33926095)
chr8 (141-210)||(12544504-12544573)
[»] chr2 (3 HSPs)
chr2 (34-129)||(23958918-23959013)
chr2 (31-82)||(13073230-13073281)
chr2 (31-68)||(19878551-19878588)
[»] chr7 (7 HSPs)
chr7 (23-67)||(8258926-8258970)
chr7 (38-130)||(1782494-1782586)
chr7 (31-71)||(12733229-12733269)
chr7 (31-69)||(11015425-11015463)
chr7 (162-227)||(4448540-4448605)
chr7 (23-68)||(23125408-23125453)
chr7 (31-67)||(32957118-32957154)
[»] chr6 (4 HSPs)
chr6 (25-69)||(29031547-29031591)
chr6 (31-98)||(17291087-17291155)
chr6 (31-88)||(19741317-19741374)
chr6 (31-68)||(21737118-21737155)
[»] chr4 (6 HSPs)
chr4 (23-124)||(15736190-15736291)
chr4 (23-118)||(13977906-13978000)
chr4 (31-65)||(15366258-15366292)
chr4 (416-469)||(2345515-2345568)
chr4 (23-124)||(12235717-12235818)
chr4 (145-185)||(12450123-12450163)
[»] chr3 (3 HSPs)
chr3 (51-151)||(4500936-4501037)
chr3 (34-69)||(10928473-10928508)
chr3 (26-131)||(27406394-27406499)
[»] scaffold1551 (1 HSPs)
scaffold1551 (31-65)||(1030-1064)
[»] chr1 (1 HSPs)
chr1 (39-88)||(23190757-23190806)
[»] scaffold0329 (1 HSPs)
scaffold0329 (56-138)||(3790-3872)
[»] scaffold0042 (1 HSPs)
scaffold0042 (52-126)||(89717-89791)
[»] chr5 (1 HSPs)
chr5 (83-124)||(19903036-19903077)


Alignment Details
Target: chr8 (Bit Score: 58; Significance: 3e-24; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 325 - 472
Target Start/End: Original strand, 7319336 - 7319484
Alignment:
Q  325 tcaatgtatctttcatttccattaacactataaatggcaaaccta-tccaatatattctcttatcccaaatc-aaattcaaaagatgaggatcattcaca 422  Q
    ||||||||||| ||||||| ||| ||||||||||||||||||| |  ||  ||||||||||||| ||||||| || ||  |||||||||||||||| |||    
T  7319336 tcaatgtatctatcatttc-attgacactataaatggcaaaccaacccccttatattctcttattccaaatcgaattttgaaagatgaggatcatttaca 7319434  T
Q  423 ttattcttttctattttactcttccctcatcatatacctcctatgctact 472  Q
    ||| ||||||||||||| |||||| || ||||||| |||| |||||||||    
T  7319435 ttactcttttctatttttctcttctcttatcatatgcctcttatgctact 7319484  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 31 - 65
Target Start/End: Complemental strand, 16226962 - 16226928
Alignment:
Q  31 ttgagcatttgtaattagttgtgattatagtgaaa 65  Q
    ||||||||||||||| |||||||||||||||||||    
T  16226962 ttgagcatttgtaatcagttgtgattatagtgaaa 16226928  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 121
Target Start/End: Original strand, 33925997 - 33926095
Alignment:
Q  23 ttgtgtgtttgagcatttgtaattagttgtgattatagtgaaaatcttttgcaaatgcaaagggacgagactactctcagattgtgagaggaactagta 121  Q
    ||||||| || |||||||||||||  | ||||||||||||||||||  ||| |||||||| | ||| ||| ||||||| | || ||| | |||||||||    
T  33925997 ttgtgtgcttaagcatttgtaatttttagtgattatagtgaaaatcccttggaaatgcaaggagactagattactctcggtttatgacatgaactagta 33926095  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 210
Target Start/End: Original strand, 12544504 - 12544573
Alignment:
Q  141 tctttctctttttgtgtttattttactccgctgcactcggaacctcagtcagaatctgaactcatttaga 210  Q
    |||| ||||||||||||||  | || ||||||||| || |||||| ||||||| |||||||||| |||||    
T  12544504 tcttactctttttgtgtttgatataatccgctgcattcagaacctgagtcagactctgaactcacttaga 12544573  T

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Target: chr2 (Bit Score: 44; Significance: 7e-16; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 34 - 129
Target Start/End: Complemental strand, 23959013 - 23958918
Alignment:
Q  34 agcatttgtaattagttgtgattatagtgaaaatcttttgcaaatgcaaagggacgagactactctcagattgtgagaggaactagtataattgct 129  Q
    |||||||||||||||||||||||||| ||||||||| ||| || ||||| |||||  ||||||||   |||||| |||||||| | ||||||||||    
T  23959013 agcatttgtaattagttgtgattataatgaaaatctcttggaagtgcaaggggactggactactcctggattgtaagaggaaccaatataattgct 23958918  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 31 - 82
Target Start/End: Complemental strand, 13073281 - 13073230
Alignment:
Q  31 ttgagcatttgtaattagttgtgattatagtgaaaatcttttgcaaatgcaa 82  Q
    ||||||||||||||||||| ||||||||||||||||||| ||| || |||||    
T  13073281 ttgagcatttgtaattagtagtgattatagtgaaaatctcttgaaagtgcaa 13073230  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 68
Target Start/End: Original strand, 19878551 - 19878588
Alignment:
Q  31 ttgagcatttgtaattagttgtgattatagtgaaaatc 68  Q
    ||||| |||||||||||||||| |||||||||||||||    
T  19878551 ttgagtatttgtaattagttgtaattatagtgaaaatc 19878588  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 8258970 - 8258926
Alignment:
Q  23 ttgtgtgtttgagcatttgtaattagttgtgattatagtgaaaat 67  Q
    ||||||||||||||||||||||||| |||||||||||||||||||    
T  8258970 ttgtgtgtttgagcatttgtaattaattgtgattatagtgaaaat 8258926  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 38 - 130
Target Start/End: Complemental strand, 1782586 - 1782494
Alignment:
Q  38 tttgtaattagttgtgattatagtgaaaatcttttgcaaatgcaaagggacgagactactctcagattgtgagaggaactagtataattgctt 130  Q
    ||||||||||||||||||||||||||| |||| ||| || ||||| |||||   | |||||  | |||||  ||||||| |||||||||||||    
T  1782586 tttgtaattagttgtgattatagtgaatatctcttggaagtgcaatgggactgaattactcctaaattgtcggaggaaccagtataattgctt 1782494  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 31 - 71
Target Start/End: Complemental strand, 12733269 - 12733229
Alignment:
Q  31 ttgagcatttgtaattagttgtgattatagtgaaaatcttt 71  Q
    |||||||||||||||||||||||||||| |||||| |||||    
T  12733269 ttgagcatttgtaattagttgtgattatcgtgaaactcttt 12733229  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 31 - 69
Target Start/End: Complemental strand, 11015463 - 11015425
Alignment:
Q  31 ttgagcatttgtaattagttgtgattatagtgaaaatct 69  Q
    ||||||||||||||| | |||||||||||||||||||||    
T  11015463 ttgagcatttgtaatcatttgtgattatagtgaaaatct 11015425  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 227
Target Start/End: Complemental strand, 4448605 - 4448540
Alignment:
Q  162 tttactccgctgcactcggaacctcagtcagaatctgaactcatttagactctaactagtgaaaca 227  Q
    |||| ||||||||| || |||||| ||||||||||||||| |||| | ||| |||||||| |||||    
T  4448605 tttaatccgctgcattcagaacctgagtcagaatctgaacacattcaaactataactagttaaaca 4448540  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 68
Target Start/End: Complemental strand, 23125453 - 23125408
Alignment:
Q  23 ttgtgtgtttgagcatttgtaattagttgtgattatagtgaaaatc 68  Q
    ||||||| |||||||||||||||||| |  ||||||||||||||||    
T  23125453 ttgtgtgcttgagcatttgtaattagattggattatagtgaaaatc 23125408  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 31 - 67
Target Start/End: Complemental strand, 32957154 - 32957118
Alignment:
Q  31 ttgagcatttgtaattagttgtgattatagtgaaaat 67  Q
    |||| |||||||||||||||||||||| |||||||||    
T  32957154 ttgaacatttgtaattagttgtgattacagtgaaaat 32957118  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 25 - 69
Target Start/End: Complemental strand, 29031591 - 29031547
Alignment:
Q  25 gtgtgtttgagcatttgtaattagttgtgattatagtgaaaatct 69  Q
    |||| ||||||||||||||||||||||||||||||||||||||||    
T  29031591 gtgtctttgagcatttgtaattagttgtgattatagtgaaaatct 29031547  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 31 - 98
Target Start/End: Complemental strand, 17291155 - 17291087
Alignment:
Q  31 ttgagcatttgtaattagttgtgattatagtg-aaaatcttttgcaaatgcaaagggacgagactactc 98  Q
    ||||||| |||||||||||||| ||||||||| ||||| | ||| |||||||| ||||| |||||||||    
T  17291155 ttgagcaattgtaattagttgttattatagtgaaaaatgtcttggaaatgcaaggggactagactactc 17291087  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 88
Target Start/End: Complemental strand, 19741374 - 19741317
Alignment:
Q  31 ttgagcatttgtaattagttgtgattatagtgaaaatcttttgcaaatgcaaagggac 88  Q
    ||||||||||||||| ||| ||||||||| ||||| ||| ||| || |||||||||||    
T  19741374 ttgagcatttgtaataagtcgtgattatattgaaattctcttggaagtgcaaagggac 19741317  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 68
Target Start/End: Complemental strand, 21737155 - 21737118
Alignment:
Q  31 ttgagcatttgtaattagttgtgattatagtgaaaatc 68  Q
    ||||||||||||||  ||||||||||||||||||||||    
T  21737155 ttgagcatttgtaaacagttgtgattatagtgaaaatc 21737118  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 23 - 124
Target Start/End: Complemental strand, 15736291 - 15736190
Alignment:
Q  23 ttgtgtgtttgagcatttgtaattagttgtgattatagtgaaaatcttttgcaaatgcaaagggacgagactactctcagattgtgagaggaactagtat 122  Q
    ||||||||||| || ||||||||   | |||||||||||||||||||  || || ||||| | ||  ||||||||||| | |||||||||||||||||||    
T  15736291 ttgtgtgtttgtgcgtttgtaatctttagtgattatagtgaaaatctcatggaagtgcaaggcgataagactactctcggtttgtgagaggaactagtat 15736192  T
Q  123 aa 124  Q
    ||    
T  15736191 aa 15736190  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 23 - 118
Target Start/End: Original strand, 13977906 - 13978000
Alignment:
Q  23 ttgtgtgtttgagcatttgtaattagttgtgattatagtgaaaatcttttgcaaatgcaaagggacgagactactctcagattgtgagaggaacta 118  Q
    ||||||| |||||||||||||||   | |||||||||||||||||   ||| || ||||| ||||| ||||||||||| | |||||||||||||||    
T  13977906 ttgtgtgcttgagcatttgtaatctttagtgattatagtgaaaattccttg-aagtgcaaggggactagactactctcggtttgtgagaggaacta 13978000  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 31 - 65
Target Start/End: Original strand, 15366258 - 15366292
Alignment:
Q  31 ttgagcatttgtaattagttgtgattatagtgaaa 65  Q
    |||||||||||||||||||||||||||||||||||    
T  15366258 ttgagcatttgtaattagttgtgattatagtgaaa 15366292  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 416 - 469
Target Start/End: Complemental strand, 2345568 - 2345515
Alignment:
Q  416 attcacattattcttttctattttactcttccctcatcatatacctcctatgct 469  Q
    ||||||| ||||||||||| ||||  ||||| ||||||||||||||| ||||||    
T  2345568 attcacactattcttttcttttttgttcttctctcatcatatacctcttatgct 2345515  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 124
Target Start/End: Complemental strand, 12235818 - 12235717
Alignment:
Q  23 ttgtgtgtttgagcatttgtaattagttgtgattatagtgaaaatcttttgcaaatgcaaagggacgagactactctcagattgtgagaggaactagtat 122  Q
    ||||||| ||||||| |||||||   | ||||||||| |||||||   ||| || |||||  || | ||||||||||| | |||||||||||||||||||    
T  12235818 ttgtgtgcttgagcaattgtaatatttagtgattataatgaaaatgccttgaaagtgcaagtggtctagactactctcggtttgtgagaggaactagtat 12235719  T
Q  123 aa 124  Q
    ||    
T  12235718 aa 12235717  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 145 - 185
Target Start/End: Complemental strand, 12450163 - 12450123
Alignment:
Q  145 tctctttttgtgtttattttactccgctgcactcggaacct 185  Q
    ||||||||||||||||| ||||||||||||| || ||||||    
T  12450163 tctctttttgtgtttatattactccgctgcattcagaacct 12450123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 51 - 151
Target Start/End: Complemental strand, 4501037 - 4500936
Alignment:
Q  51 gtgattatagtgaaaatcttttgcaaatgcaaagggacgagactactctcagattgtgagaggaactagtat-aattgctttgtctctccttctttctct 149  Q
    ||||||||||||||||||| ||| || ||||| ||||| |||||||| || | | |||||| |||||||||| ||||| ||||| ||||  |||||||||    
T  4501037 gtgattatagtgaaaatctcttgaaagtgcaaggggactagactactatcggttagtgagatgaactagtataaattgttttgtgtctctctctttctct 4500938  T
Q  150 tt 151  Q
    ||    
T  4500937 tt 4500936  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 34 - 69
Target Start/End: Complemental strand, 10928508 - 10928473
Alignment:
Q  34 agcatttgtaattagttgtgattatagtgaaaatct 69  Q
    |||||||||||| |||||||||||||||||||||||    
T  10928508 agcatttgtaatcagttgtgattatagtgaaaatct 10928473  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 131
Target Start/End: Original strand, 27406394 - 27406499
Alignment:
Q  26 tgtgtttgagcatttgtaattagttgtgattatagtgaaaatcttttgcaaatgcaaagggacgagactactctcagattgtgagaggaactagtataat 125  Q
    ||||||||| || ||||||| | |||||||||| |||||||||  ||| || || || |||||  ||||||||   ||||||  ||||||||||||||||    
T  27406394 tgtgtttgaacaattgtaatcaattgtgattatggtgaaaatcccttgaaagtgtaacgggactggactactcctggattgtatgaggaactagtataat 27406493  T
Q  126 tgcttt 131  Q
    | ||||    
T  27406494 tacttt 27406499  T

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Target: scaffold1551 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold1551
Description:

Target: scaffold1551; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 31 - 65
Target Start/End: Original strand, 1030 - 1064
Alignment:
Q  31 ttgagcatttgtaattagttgtgattatagtgaaa 65  Q
    |||||||||||||||||||||||||||||||||||    
T  1030 ttgagcatttgtaattagttgtgattatagtgaaa 1064  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 39 - 88
Target Start/End: Complemental strand, 23190806 - 23190757
Alignment:
Q  39 ttgtaattagttgtgattatagtgaaaatcttttgcaaatgcaaagggac 88  Q
    ||||||||||||||||||||||||||||||| ||| || ||||| |||||    
T  23190806 ttgtaattagttgtgattatagtgaaaatctcttggaagtgcaaggggac 23190757  T

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Target: scaffold0329 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 56 - 138
Target Start/End: Complemental strand, 3872 - 3790
Alignment:
Q  56 tatagtgaaaatcttttgcaaatgcaaagggacgagactactctcagattgtgagaggaactagtataattgctttgtctctc 138  Q
    |||||||||||||  ||| |||||||  |||||  ||||||||||||  |||||| ||||| ||||||||||| || ||||||    
T  3872 tatagtgaaaatcccttggaaatgcagggggacatgactactctcagtatgtgaggggaaccagtataattgccttctctctc 3790  T

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Target: scaffold0042 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 52 - 126
Target Start/End: Original strand, 89717 - 89791
Alignment:
Q  52 tgattatagtgaaaatcttttgcaaatgcaaagggacgagactactctcagattgtgagaggaactagtataatt 126  Q
    |||||| ||||||||||||||| || ||||| ||||| |||| | |||| | || |||||||||| |||||||||    
T  89717 tgattaaagtgaaaatcttttgaaagtgcaaggggactagacaattctcggtttatgagaggaacgagtataatt 89791  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 83 - 124
Target Start/End: Complemental strand, 19903077 - 19903036
Alignment:
Q  83 agggacgagactactctcagattgtgagaggaactagtataa 124  Q
    |||||| ||||||||||| | |||||||||||||||||||||    
T  19903077 agggactagactactctcggtttgtgagaggaactagtataa 19903036  T

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