View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17304_low_27 (Length: 234)

Name: NF17304_low_27
Description: NF17304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17304_low_27
NF17304_low_27
[»] chr4 (5 HSPs)
chr4 (16-221)||(29937147-29937352)
chr4 (13-221)||(51145576-51145784)
chr4 (13-221)||(51156717-51156925)
chr4 (28-220)||(51199566-51199758)
chr4 (58-217)||(51212715-51212874)
[»] chr3 (2 HSPs)
chr3 (58-221)||(49737140-49737303)
chr3 (106-221)||(36285923-36286038)
[»] chr1 (1 HSPs)
chr1 (31-140)||(38566805-38566914)


Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 16 - 221
Target Start/End: Original strand, 29937147 - 29937352
Alignment:
Q  16 aagatttgagaattcacctgagggagtttgtctataaatttggcagcattagcaagttccgctgcagctcttatttcttcaacagttgccccatccttgc 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  29937147 aagatttgagaattcacctgagggagtttgtctataaatttggcagcattagcaagttccgctgcagctcttatttcctcaacagttgccccatccttgc 29937246  T
Q  116 cataggaaatattcttcttaatgctacaagtaaagagaacgggttcctggctgactaggcctattttctgtctgatccatttcagattaaattctttgag 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29937247 cataggaaatattcttcttaatgctacaagtaaagagaacgggttcctggctgactaggcctattttctgtctgatccatttcagattaaattctttgag 29937346  T
Q  216 gttgat 221  Q
    | ||||    
T  29937347 gctgat 29937352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 13 - 221
Target Start/End: Complemental strand, 51145784 - 51145576
Alignment:
Q  13 atgaagatttgagaattcacctgagggagtttgtctataaatttggcagcattagcaagttccgctgcagctcttatttcttcaacagttgccccatcct 112  Q
    |||||||||||||| ||||||||||| ||||| ||||||||||| ||||||||||||||||| |||||| |||| ||||||||| ||||||| |  ||||    
T  51145784 atgaagatttgagatttcacctgaggaagtttatctataaatttagcagcattagcaagttctgctgcaactctgatttcttcatcagttgcacagtcct 51145685  T
Q  113 tgccataggaaatattcttcttaatgctacaagtaaagagaacgggttcctggctgactaggcctattttctgtctgatccatttcagattaaattcttt 212  Q
    ||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |||||||||    
T  51145684 tgccatatgcaatattctccttaatgctacaagtaaagagaacgggttcctggctgactaggcctattttctgtctgatccattttagttgaaattcttt 51145585  T
Q  213 gaggttgat 221  Q
    |||||||||    
T  51145584 gaggttgat 51145576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 13 - 221
Target Start/End: Complemental strand, 51156925 - 51156717
Alignment:
Q  13 atgaagatttgagaattcacctgagggagtttgtctataaatttggcagcattagcaagttccgctgcagctcttatttcttcaacagttgccccatcct 112  Q
    |||||||||||| | ||||||||||| ||||| ||||||||||||||||| ||| ||||||| |||||| |||| ||||||||| ||||||| |  ||||    
T  51156925 atgaagatttgaaagttcacctgaggaagtttatctataaatttggcagcgttaccaagttctgctgcaactctgatttcttcatcagttgcacagtcct 51156826  T
Q  113 tgccataggaaatattcttcttaatgctacaagtaaagagaacgggttcctggctgactaggcctattttctgtctgatccatttcagattaaattcttt 212  Q
    ||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |||||||||    
T  51156825 tgccatatgcaatattctccttaatgctacaagtaaagagaacgggttcctggctgactaggcctattttctgtctgatccattttagttgaaattcttt 51156726  T
Q  213 gaggttgat 221  Q
    |||||||||    
T  51156725 gaggttgat 51156717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 28 - 220
Target Start/End: Complemental strand, 51199758 - 51199566
Alignment:
Q  28 ttcacctgagggagtttgtctataaatttggcagcattagcaagttccgctgcagctcttatttcttcaacagttgccccatccttgccataggaaatat 127  Q
    ||||||||||| ||||| |||||||||||||||||||||||||| || ||||||||||| ||||||||| |||| || |||||||||||||| | ||| |    
T  51199758 ttcacctgaggaagtttatctataaatttggcagcattagcaagctcggctgcagctctgatttcttcatcagtagcaccatccttgccatatgcaatgt 51199659  T
Q  128 tcttcttaatgctacaagtaaagagaacgggttcctggctgactaggcctattttctgtctgatccatttcagattaaattctttgaggttga 220  Q
    |||  |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||    
T  51199658 tctctttaatgctgcaagtaaagagaacaggttcctggctgactaggcctattttctgtctgatccatttcagttgaaattctttgaggttga 51199566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 58 - 217
Target Start/End: Complemental strand, 51212874 - 51212715
Alignment:
Q  58 gcagcattagcaagttccgctgcagctcttatttcttcaacagttgccccatccttgccataggaaatattcttcttaatgctacaagtaaagagaacgg 157  Q
    ||||||||||||||||| ||||||||||  ||||||||| | |||||| ||||||| ||||||| ||| ||||  ||||||||||||||||||||||| |    
T  51212874 gcagcattagcaagttctgctgcagctcggatttcttcatcggttgccgcatccttaccataggcaatgttctctttaatgctacaagtaaagagaactg 51212775  T
Q  158 gttcctggctgactaggcctattttctgtctgatccatttcagattaaattctttgaggt 217  Q
    ||||||| || |||||||||||||||||||||||||||||||  | ||||||| ||||||    
T  51212774 gttcctgactcactaggcctattttctgtctgatccatttcaattgaaattctctgaggt 51212715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 58 - 221
Target Start/End: Original strand, 49737140 - 49737303
Alignment:
Q  58 gcagcattagcaagttccgctgcagctcttatttcttcaacagttgccccatccttgccataggaaatattcttcttaatgctacaagtaaagagaacgg 157  Q
    ||||| ||||| ||||| | ||||||||| ||||||||| | ||||| |||||||| ||||||| ||| ||||  ||||||||||||||||||||||| |    
T  49737140 gcagctttagctagttctgttgcagctctgatttcttcatctgttgctccatccttaccataggcaatgttctctttaatgctacaagtaaagagaactg 49737239  T
Q  158 gttcctggctgactaggcctattttctgtctgatccatttcagattaaattctttgaggttgat 221  Q
    ||||||| ||||||| ||||||||| ||||||||||||||||| | ||||||||||||||||||    
T  49737240 gttcctgactgactaagcctattttttgtctgatccatttcagttgaaattctttgaggttgat 49737303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 106 - 221
Target Start/End: Complemental strand, 36286038 - 36285923
Alignment:
Q  106 ccatccttgccataggaaatattcttcttaatgctacaagtaaagagaacgggttcctggctgactaggcctattttctgtctgatccatttcagattaa 205  Q
    |||||||| ||||||| |||||| |  |||||||| |  ||||| ||||| || ||||| ||||| | ||||||||||||||| |||||||| || | ||    
T  36286038 ccatccttaccataggtaatattttctttaatgctgccggtaaacagaactggctcctgactgaccaagcctattttctgtctaatccatttaagctgaa 36285939  T
Q  206 attctttgaggttgat 221  Q
    ||||||| | ||||||    
T  36285938 attcttttacgttgat 36285923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 140
Target Start/End: Original strand, 38566805 - 38566914
Alignment:
Q  31 acctgagggagtttgtctataaatttggcagcattagcaagttccgctgcagctcttatttcttcaacagttgccccatccttgccataggaaatattct 130  Q
    ||||| || ||||| || || ||||||||||| || |||||||| | ||||| |||||| |||||||  ||||| ||||| || ||||| ||||| || |    
T  38566805 acctggggcagtttatcaatgaatttggcagcgtttgcaagttcagatgcagatcttatctcttcaatcgttgctccatctttaccatatgaaatgttat 38566904  T
Q  131 tcttaatgct 140  Q
     |||||||||    
T  38566905 ccttaatgct 38566914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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