View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17304_low_28 (Length: 233)

Name: NF17304_low_28
Description: NF17304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17304_low_28
NF17304_low_28
[»] scaffold0294 (1 HSPs)
scaffold0294 (1-213)||(10770-10982)
[»] chr4 (11 HSPs)
chr4 (1-183)||(4126542-4126724)
chr4 (1-211)||(4342629-4342839)
chr4 (2-183)||(4358125-4358306)
chr4 (3-183)||(4323209-4323389)
chr4 (2-183)||(4135650-4135831)
chr4 (1-182)||(4350947-4351128)
chr4 (3-215)||(4330169-4330384)
chr4 (6-183)||(4333267-4333444)
chr4 (1-69)||(25567832-25567900)
chr4 (1-161)||(6713526-6713686)
chr4 (1-79)||(6725727-6725805)
[»] chr6 (21 HSPs)
chr6 (15-156)||(5174608-5174749)
chr6 (1-183)||(5093756-5093938)
chr6 (1-183)||(5149067-5149249)
chr6 (1-183)||(5159606-5159788)
chr6 (1-161)||(5104977-5105143)
chr6 (12-181)||(5184068-5184237)
chr6 (1-161)||(5075836-5075996)
chr6 (15-156)||(5276447-5276588)
chr6 (1-183)||(5368169-5368357)
chr6 (7-213)||(5341379-5341585)
chr6 (1-209)||(5423436-5423650)
chr6 (9-161)||(5356729-5356887)
chr6 (1-73)||(5348236-5348308)
chr6 (1-209)||(5069176-5069390)
chr6 (1-56)||(5381488-5381542)
chr6 (1-176)||(5431129-5431304)
chr6 (1-70)||(5286228-5286297)
chr6 (1-72)||(5134010-5134081)
chr6 (8-70)||(5262255-5262317)
chr6 (1-78)||(5692216-5692293)
chr6 (15-64)||(5394877-5394926)
[»] chr2 (1 HSPs)
chr2 (1-48)||(22586420-22586467)


Alignment Details
Target: scaffold0294 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 10770 - 10982
Alignment:
Q  1 cttttgcaatggttgttttaccaattccccccataccccaaatccctagtagcagaacatcatttgattgttgaatgtttagtaattgaatcgtatcgtg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||  ||||||| | ||     
T  10770 cttttgcaatggttgttttaccaattccccccataccccaaatccctagtagcagaacatcatttgattgttgaatttttagcaacggaatcgttttgtc 10869  T
Q  101 cactcgagatttgactcccaccggattatcaacaacgaataagtctgtcttgtcaagcaaaatagtaactttttcaacaatatgatcaattacctccctt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||    
T  10870 cactcgagatttgactcccaccggattatcaacaacgaataagtctgtcttgtcaagcaaaatagtaactttttcaacaatatgatcgattgcctccgtt 10969  T
Q  201 tcattcctataaa 213  Q
    |||||||||||||    
T  10970 tcattcctataaa 10982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 91; Significance: 3e-44; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 4126542 - 4126724
Alignment:
Q  1 cttttgcaatggttgttttaccaattccccccataccccaaatccctagtagcagaacatcatttgattgttgaatgtttagtaattgaatcgtatcgtg 100  Q
    ||||||||||||| |||||||||||||| ||||| ||||| ||||| || || |||||||||||||| |||||| ||| ||| | ||||||| |||| ||    
T  4126542 cttttgcaatggtggttttaccaattccacccatcccccacatccccagcagtagaacatcatttgactgttgagtgtctagaagttgaatcatatcttg 4126641  T
Q  101 cactcgagatttgactcccaccggattatcaacaacgaataagtctgtcttgtcaagcaaaatagtaactttttcaacaatat 183  Q
    ||||||||||| |||||| || ||||||||| ||| ||| ||||||||||||||||||||| | ||||| |||||||||||||    
T  4126642 cactcgagattcgactccgacaggattatcagcaatgaacaagtctgtcttgtcaagcaaatttgtaacattttcaacaatat 4126724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 4342839 - 4342629
Alignment:
Q  1 cttttgcaatggttgttttaccaattccccccataccccaaatccctagtagcagaacatcatttgattgttgaatgtttagtaattgaatcgtatcgtg 100  Q
    ||||||||||||| ||||| || ||||| ||||| ||||| ||||||||||| ||||||||||||||||||||| ||| ||  | ||||||| |||| ||    
T  4342839 cttttgcaatggtggttttccccattccacccatcccccacatccctagtagtagaacatcatttgattgttgagtgtctataagttgaatcatatcttg 4342740  T
Q  101 cactcgagatttgactcccaccggattatcaacaacgaataagtctgtcttgtcaagcaaaatagtaactttttcaacaatatgatcaattacctccctt 200  Q
    ||||||||| | |||||| ||||||| |||| ||| ||| |||||||||||||||||||||    |||| |||||||||||||  |  || ||||| |||    
T  4342739 cactcgagaatcgactccgaccggataatcagcaatgaacaagtctgtcttgtcaagcaaacgtataacattttcaacaatatctttgataacctcactt 4342640  T
Q  201 tcattcctata 211  Q
    |||||||||||    
T  4342639 tcattcctata 4342629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 2 - 183
Target Start/End: Complemental strand, 4358306 - 4358125
Alignment:
Q  2 ttttgcaatggttgttttaccaattccccccataccccaaatccctagtagcagaacatcatttgattgttgaatgtttagtaattgaatcgtatcgtgc 101  Q
    |||||||||||| ||||| || ||||| ||||| ||||| ||||||||||| ||| |||| |||||||||||| | | ||| | ||||||| |||| |||    
T  4358306 ttttgcaatggtggtttttccgattccacccatcccccacatccctagtagtagagcatcgtttgattgttgagtttctaggagttgaatcatatcttgc 4358207  T
Q  102 actcgagatttgactcccaccggattatcaacaacgaataagtctgtcttgtcaagcaaaatagtaactttttcaacaatat 183  Q
    |||||||| | |||||| || ||||||||| ||| ||| |||||||||||||||||||||  |||||| |||||||||||||    
T  4358206 actcgagaatcgactcctactggattatcagcaatgaacaagtctgtcttgtcaagcaaacgagtaacattttcaacaatat 4358125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 3 - 183
Target Start/End: Original strand, 4323209 - 4323389
Alignment:
Q  3 tttgcaatggttgttttaccaattccccccataccccaaatccctagtagcagaacatcatttgattgttgaatgtttagtaattgaatcgtatcgtgca 102  Q
    ||||||| ||| ||||| |||||||| ||||| ||||| ||||||||||| ||||||||||||| ||||||| ||| ||| | ||||||| |||| ||||    
T  4323209 tttgcaacggtggtttttccaattccacccatcccccacatccctagtagtagaacatcatttgtttgttgagtgtctagaagttgaatcatatcttgca 4323308  T
Q  103 ctcgagatttgactcccaccggattatcaacaacgaataagtctgtcttgtcaagcaaaatagtaactttttcaacaatat 183  Q
    ||||||| | ||  ||||| ||||||||| ||||||| |||||||||||||| || |||   ||||| |||||||||||||    
T  4323309 ctcgagaatcgatacccacaggattatcagcaacgaacaagtctgtcttgtccagtaaacgtgtaacattttcaacaatat 4323389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 2 - 183
Target Start/End: Original strand, 4135650 - 4135831
Alignment:
Q  2 ttttgcaatggttgttttaccaattccccccataccccaaatccctagtagcagaacatcatttgattgttgaatgtttagtaattgaatcgtatcgtgc 101  Q
    ||||||||| |||||||||||||| ||  |||||||||| ||||||||||| ||||||||||||||   | || |||  |||| ||||||| ||||  ||    
T  4135650 ttttgcaatagttgttttaccaataccttccataccccacatccctagtagtagaacatcatttgaaaatggagtgtccagtagttgaatcatatctagc 4135749  T
Q  102 actcgagatttgactcccaccggattatcaacaacgaataagtctgtcttgtcaagcaaaatagtaactttttcaacaatat 183  Q
    |||||||||| |||||  || ||||  ||| ||| ||| | |||||||||||||||||||   |||||||||||||||||||    
T  4135750 actcgagattcgactctaactggatggtcagcaatgaacaggtctgtcttgtcaagcaaatgtgtaactttttcaacaatat 4135831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 4351128 - 4350947
Alignment:
Q  1 cttttgcaatggttgttttaccaattccccccataccccaaatccctagtagcagaacatcatttgattgttgaatgtttagtaattgaatcgtatcgtg 100  Q
    ||||||||| ||| | ||| || ||||| ||||| ||||| ||||||| ||| |||||||| |||||||| ||| ||| ||| | || |||| |||| ||    
T  4351128 cttttgcaacggtggatttgccgattccacccatcccccacatccctattagtagaacatcttttgattggtgagtgtctagaagtttaatcatatcttg 4351029  T
Q  101 cactcgagatttgactcccaccggattatcaacaacgaataagtctgtcttgtcaagcaaaatagtaactttttcaacaata 182  Q
    |||  |||||| ||||||||| ||||||||||||| |||||||||| ||||||||| ||||   ||||  ||||||||||||    
T  4351028 cacctgagattcgactcccacaggattatcaacaatgaataagtctatcttgtcaaacaaacgtgtaatattttcaacaata 4350947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 3 - 215
Target Start/End: Complemental strand, 4330384 - 4330169
Alignment:
Q  3 tttgcaatggttgttttaccaattccccccataccccaaatccctagtagcagaacatcatttgattgttgaa---tgtttagtaattgaatcgtatcgt 99  Q
    |||||||||||  |||| || ||||| ||| | ||||| ||| |||  || |||||||||||||||||||||    ||| ||| | ||||||| | || |    
T  4330384 tttgcaatggtgattttgccgattccacccgtcccccacatctctaagagtagaacatcatttgattgttgatgagtgtctagaagttgaatcatctctt 4330285  T
Q  100 gcactcgagatttgactcccaccggattatcaacaacgaataagtctgtcttgtcaagcaaaatagtaactttttcaacaatatgatcaattacctccct 199  Q
     |||||||||||| | | |||||||||||||| ||| |||||||||| |||| ||||| ||||  ||||| |||||||||||||  |  || || || ||    
T  4330284 acactcgagatttaatttccaccggattatcagcaatgaataagtctatcttatcaagaaaaagtgtaacattttcaacaatattcttgataacttctct 4330185  T
Q  200 ttcattcctataaaga 215  Q
    ||||||||||||||||    
T  4330184 ttcattcctataaaga 4330169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 6 - 183
Target Start/End: Complemental strand, 4333444 - 4333267
Alignment:
Q  6 gcaatggttgttttaccaattccccccataccccaaatccctagtagcagaacatcatttgattgttgaatgtttagtaattgaatcgtatcgtgcactc 105  Q
    ||||| || ||||| ||||| || ||||| ||||| || ||||| || ||||| | ||||||| ||||| ||| ||| | ||||||| |||| || ||||    
T  4333444 gcaattgtggttttcccaatcccacccatcccccacattcctagcagtagaactttatttgatagttgagtgtctagaagttgaatcatatcttgtactc 4333345  T
Q  106 gagatttgactcccaccggattatcaacaacgaataagtctgtcttgtcaagcaaaatagtaactttttcaacaatat 183  Q
    |||||| |||||| ||||||| |||| ||| ||| ||||| |||||||||||||||   | ||| |||||||||||||    
T  4333344 gagattcgactcctaccggatgatcagcaatgaacaagtcagtcttgtcaagcaaacgtgcaacattttcaacaatat 4333267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 25567900 - 25567832
Alignment:
Q  1 cttttgcaatggttgttttaccaattccccccataccccaaatccctagtagcagaacatcatttgatt 69  Q
    ||||||||||||| ||||| ||||| || ||||||||||| |||||||| || |||||||| |||||||    
T  25567900 cttttgcaatggtggttttgccaatccctcccataccccacatccctagaagtagaacatcttttgatt 25567832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 6713686 - 6713526
Alignment:
Q  1 cttttgcaatggttgttttaccaattccccccataccccaaatccctagtagcagaacatcatttgattgttgaatgtttagtaattgaatcgtatcgtg 100  Q
    |||| |||| ||||||||| || |  |||||||| ||||| |||||||  || | |||||||||||| | ||| || |||||||| | | ||  ||| |     
T  6713686 ctttggcaagggttgttttgcccaagccccccattccccagatccctaaaagtaaaacatcatttgaattttggatatttagtaaattagtcacatcttc 6713587  T
Q  101 cactcgagatttgactcccaccggattatcaacaacgaataagtctgtcttgtcaagcaaa 161  Q
    |||||||||| |||| || || ||||  |||||||| |||||||||||||| || ||||||    
T  6713586 cactcgagatctgacaccgactggatattcaacaacaaataagtctgtcttatctagcaaa 6713526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 6725805 - 6725727
Alignment:
Q  1 cttttgcaatggttgttttaccaattccccccataccccaaatccctagtagcagaacatcatttgattgttgaatgtt 79  Q
    |||| |||| ||||||||||||  | ||||||||||||||||||||||| || | |||||| | ||||| ||| |||||    
T  6725805 ctttggcaagggttgttttacccgtaccccccataccccaaatccctagaagtaaaacatcttctgatttttggatgtt 6725727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 74; Significance: 4e-34; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 15 - 156
Target Start/End: Complemental strand, 5174749 - 5174608
Alignment:
Q  15 gttttaccaattccccccataccccaaatccctagtagcagaacatcatttgattgttgaatgtttagtaattgaatcgtatcgtgcactcgagatttga 114  Q
    ||||||||||| || ||||||||||| |||||||  || ||||||||||| |||||||| |||| ||| ||||||||| |||| ||||||||||||| ||    
T  5174749 gttttaccaatacctcccataccccacatccctatcagtagaacatcattagattgttggatgtctagcaattgaatcatatcttgcactcgagattcga 5174650  T
Q  115 ctcccaccggattatcaacaacgaataagtctgtcttgtcaa 156  Q
     |||||||||||||||| |||| || ||||||||||||||||    
T  5174649 gtcccaccggattatcagcaacaaacaagtctgtcttgtcaa 5174608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 5093938 - 5093756
Alignment:
Q  1 cttttgcaatggttgttttaccaattccccccataccccaaatccctagtagcagaacatcatttgattgttgaatgtttagtaattgaatcgtatcgtg 100  Q
    ||||||||||||||||||||||||| |||||||||||||| ||||| |||||||| ||||||||||||||||| |||| ||  | || |||   ||| ||    
T  5093938 cttttgcaatggttgttttaccaatcccccccataccccacatcccaagtagcagtacatcatttgattgttggatgtctaacagttcaataacatcttg 5093839  T
Q  101 cactcgagatttgactcccaccggattatcaacaacgaataagtctgtcttgtcaagcaaaatagtaactttttcaacaatat 183  Q
    |||||||||    |||||||| || |||||| ||| ||| || |||||||| |||||||||  ||||| ||||||||||||||    
T  5093838 cactcgagaaccaactcccacaggtttatcagcaatgaacaaatctgtcttatcaagcaaatgagtaattttttcaacaatat 5093756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 5149067 - 5149249
Alignment:
Q  1 cttttgcaatggttgttttaccaattccccccataccccaaatccctagtagcagaacatcatttgattgttgaatgtttagtaattgaatcgtatcgtg 100  Q
    ||||||||||||| | ||| |||||||||||||||||||| || |||||||  || ||||||||||||| ||| |||| ||| | ||||||| |||| ||    
T  5149067 cttttgcaatggtggatttgccaattccccccataccccacattcctagtaatagtacatcatttgatttttggatgtctagcagttgaatcatatcttg 5149166  T
Q  101 cactcgagatttgactcccaccggattatcaacaacgaataagtctgtcttgtcaagcaaaatagtaactttttcaacaatat 183  Q
     ||||||| ||  ||||| || ||||||| | ||||||| ||||| |||||||| |||||   ||||||||||||||||||||    
T  5149167 tactcgagtttcaactccgactggattatgagcaacgaacaagtcggtcttgtctagcaagtgagtaactttttcaacaatat 5149249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 5159606 - 5159788
Alignment:
Q  1 cttttgcaatggttgttttaccaattccccccataccccaaatccctagtagcagaacatcatttgattgttgaatgtttagtaattgaatcgtatcgtg 100  Q
    ||||||||||||||||||| ||||| |||||||||||||| ||||| |||||||| |||||||| || ||||| |||| ||| | || |||   ||| ||    
T  5159606 cttttgcaatggttgttttgccaatcccccccataccccacatcccaagtagcagtacatcattggagtgttggatgtctagcagttcaataacatcttg 5159705  T
Q  101 cactcgagatttgactcccaccggattatcaacaacgaataagtctgtcttgtcaagcaaaatagtaactttttcaacaatat 183  Q
    |||||||||    |||||||| ||||||||| ||| ||| || |||||||| |||||||||  ||||| ||||||||||||||    
T  5159706 cactcgagaaccaactcccacaggattatcagcaatgaacaaatctgtcttatcaagcaaatgagtaattttttcaacaatat 5159788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 5104977 - 5105143
Alignment:
Q  1 cttttgcaatggttgttttaccaattccccccataccccaaatccctagtagcagaacatcatttgattgttgaat------gtttagtaattgaatcgt 94  Q
    |||| ||||||||||||||||||| ||| ||||||||||| ||||||||||| |||||||||||||||||||| ||      || ||| | ||||||| |    
T  5104977 ctttggcaatggttgttttaccaactcctcccataccccacatccctagtaggagaacatcatttgattgttggatatcttggtctagcagttgaatcat 5105076  T
Q  95 atcgtgcactcgagatttgactcccaccggattatcaacaacgaataagtctgtcttgtcaagcaaa 161  Q
    ||| || ||||||||||  |||||||||||||||| | |||  || || ||||||||||||||||||    
T  5105077 atcttgaactcgagattcaactcccaccggattattagcaataaacaaatctgtcttgtcaagcaaa 5105143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 12 - 181
Target Start/End: Original strand, 5184068 - 5184237
Alignment:
Q  12 gttgttttaccaattccccccataccccaaatccctagtagcagaacatcatttgattgttgaatgtttagtaattgaatcgtatcgtgcactcgagatt 111  Q
    |||||||||||||| || ||||||||||| ||||||||||| | |||| |||||||| |||| |||| ||| |||||||||  |||  | ||||||||||    
T  5184068 gttgttttaccaatacctcccataccccagatccctagtagtataacaccatttgatcgttggatgtctagcaattgaatcacatctcgtactcgagatt 5184167  T
Q  112 tgactcccaccggattatcaacaacgaataagtctgtcttgtcaagcaaaatagtaactttttcaacaat 181  Q
     ||||||||||||||||||  ||| ||| || ||||||||| | ||||||   ||||| |||||||||||    
T  5184168 cgactcccaccggattatccgcaatgaacaaatctgtcttgcctagcaaatgtgtaacattttcaacaat 5184237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 5075836 - 5075996
Alignment:
Q  1 cttttgcaatggttgttttaccaattccccccataccccaaatccctagtagcagaacatcatttgattgttgaatgtttagtaattgaatcgtatcgtg 100  Q
    ||||||||||||| ||||||||||| || ||||||||||||||||||||||| | |   ||||| | |||||| |||||||    ||||||| |||| |     
T  5075836 cttttgcaatggtggttttaccaatcccacccataccccaaatccctagtagtacattttcattggtttgttggatgtttaaccgttgaatcatatcttc 5075935  T
Q  101 cactcgagatttgactcccaccggattatcaacaacgaataagtctgtcttgtcaagcaaa 161  Q
     |||||||||| ||||||||| ||||||||| ||| ||| || ||||||||||||||||||    
T  5075936 tactcgagattcgactcccactggattatcagcaatgaacaaatctgtcttgtcaagcaaa 5075996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 15 - 156
Target Start/End: Complemental strand, 5276588 - 5276447
Alignment:
Q  15 gttttaccaattccccccataccccaaatccctagtagcagaacatcatttgattgttgaatgtttagtaattgaatcgtatcgtgcactcgagatttga 114  Q
    ||||||||||| |  ||||||||||| |||||||  || ||||||||||| |||||||| |||| ||| ||| ||||| |||| ||||||||||||||||    
T  5276588 gttttaccaatacgtcccataccccacatccctaccagtagaacatcattagattgttggatgtctagcaatggaatcatatcttgcactcgagatttga 5276489  T
Q  115 ctcccaccggattatcaacaacgaataagtctgtcttgtcaa 156  Q
     |||||| ||||||||| |||| || |||  |||||||||||    
T  5276488 gtcccactggattatcagcaacaaacaagcatgtcttgtcaa 5276447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 5368357 - 5368169
Alignment:
Q  1 cttttgcaatggttgttttaccaattccccccataccccaaatccctagtagcagaacatcatttgattgttgaatgttt------agtaattgaatcgt 94  Q
    |||| ||||||||||||||||||| ||||||||||||||| ||||| ||||| |||||||||||||||||||| || | |      | || ||||||| |    
T  5368357 ctttggcaatggttgttttaccaactccccccataccccacatccccagtagaagaacatcatttgattgttggatatcttgctccattagttgaatcat 5368258  T
Q  95 atcgtgcactcgagatttgactcccaccggattatcaacaacgaataagtctgtcttgtcaagcaaaatagtaactttttcaacaatat 183  Q
    | | |||||||||||||  |||||||| ||||||||| |||  || || |||||||||||||||  |   ||||| |||||||||||||    
T  5368257 accttgcactcgagattcaactcccactggattatcagcaataaacaattctgtcttgtcaagcttacgcgtaacattttcaacaatat 5368169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 7 - 213
Target Start/End: Complemental strand, 5341585 - 5341379
Alignment:
Q  7 caatggttgttttaccaattccccccataccccaaatccctagtagcagaacatcatttgattgttgaatgtttagtaattgaatcgtatcgtgcactcg 106  Q
    ||||||| || ||||||||||| ||||||||||| ||||||| ||| |||| ||||||||||||||| || |  || | ||||||| |||| |||| |||    
T  5341585 caatggtagtcttaccaattcctcccataccccacatccctaatagtagaatatcatttgattgttggatatcaagcagttgaatcatatcttgcaatcg 5341486  T
Q  107 agatttgactcccaccggattatcaacaacgaataagtctgtcttgtcaagcaaaatagtaactttttcaacaatatgatcaattacctccctttcattc 206  Q
     ||||  || ||| | |||||||||||||| || ||||||||||||| ||||||    ||||||||||| || ||||  |  ||  |||| |||||||||    
T  5341485 ggattcaacccccgctggattatcaacaacaaacaagtctgtcttgttaagcaagcgcgtaactttttcgacgatatccttgatagcctcgctttcattc 5341386  T
Q  207 ctataaa 213  Q
    |||||||    
T  5341385 ctataaa 5341379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 5423650 - 5423436
Alignment:
Q  1 cttttgcaatggttgttttaccaattccccccataccccaaatccctagtagcagaacatcatttgattgttgaat------gtttagtaattgaatcgt 94  Q
    |||| ||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||| || ||||||||  ||      ||  || | ||||||| |    
T  5423650 ctttggcaatggttgttttaccaactccccccataccccacatccctagtagaagaacattatctgattgttttatatcttggtccagcagttgaatcat 5423551  T
Q  95 atcgtgcactcgagatttgactcccaccggattatcaacaacgaataagtctgtcttgtcaagcaaaatagtaactttttcaacaatatgatcaattacc 194  Q
    ||| |||||||||||||  |||||||| ||||||| | |||  || || |||||||||||||||  |   ||||| |||||||||||||  | |||  ||    
T  5423550 atcttgcactcgagattcaactcccacaggattattagcaataaacaaatctgtcttgtcaagcttacgcgtaacattttcaacaatatccttaatagcc 5423451  T
Q  195 tccctttcattccta 209  Q
    || ||||||||||||    
T  5423450 tcactttcattccta 5423436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 9 - 161
Target Start/End: Original strand, 5356729 - 5356887
Alignment:
Q  9 atggttgttttaccaattccccccataccccaaatccctagtagcagaacatcatttgattgttgaat-----gtt-tagtaattgaatcgtatcgtgca 102  Q
    ||||||||||| |||| ||| ||||||||||| |||||||| || | |||||||||||||||||| ||     ||| ||| |  | |||| |||| ||||    
T  5356729 atggttgttttgccaactcctcccataccccacatccctagaaggaaaacatcatttgattgttggatatcttgttctagcagcttaatcatatcttgca 5356828  T
Q  103 ctcgagatttgactcccaccggattatcaacaacgaataagtctgtcttgtcaagcaaa 161  Q
    | |||||||  |||||||||||||||| | |||| ||||||||||||||||||||||||    
T  5356829 cacgagattcaactcccaccggattattagcaacaaataagtctgtcttgtcaagcaaa 5356887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 5348308 - 5348236
Alignment:
Q  1 cttttgcaatggttgttttaccaattccccccataccccaaatccctagtagcagaacatcatttgattgttg 73  Q
    |||| |||||||| |||||||||| ||| ||||||||||| ||||||||||| ||||||||||||||||||||    
T  5348308 ctttggcaatggtcgttttaccaactcctcccataccccacatccctagtaggagaacatcatttgattgttg 5348236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 5069176 - 5069390
Alignment:
Q  1 cttttgcaatggttgttttaccaattccccccataccccaaatccctagtagcagaacatcatttgattgttgaat------gtttagtaattgaatcgt 94  Q
    |||| |||||||| |||||||||| ||| ||||||||||| |||||||| || ||||||||||||||| |||| ||      ||  || | ||||||| |    
T  5069176 ctttggcaatggtcgttttaccaactcctcccataccccacatccctagaaggagaacatcatttgatagttggatatcttggtccagcagttgaatcat 5069275  T
Q  95 atcgtgcactcgagatttgactcccaccggattatcaacaacgaataagtctgtcttgtcaagcaaaatagtaactttttcaacaatatgatcaattacc 194  Q
    ||| |||||||||||||  |||||||| ||||||| | |||  || ||||||| ||||||||||  |   ||||| |||||||||||||  || || ||     
T  5069276 atcctgcactcgagattcaactcccactggattattagcaataaacaagtctgccttgtcaagcttacgcgtaacattttcaacaatatcctctataaca 5069375  T
Q  195 tccctttcattccta 209  Q
    || ||||||||||||    
T  5069376 tcactttcattccta 5069390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 5381542 - 5381488
Alignment:
Q  1 cttttgcaatggttgttttaccaattccccccataccccaaatccctagtagcaga 56  Q
    |||||||||||||||||||||| || ||||||||||||||||||||||||||||||    
T  5381542 cttttgcaatggttgttttaccgat-ccccccataccccaaatccctagtagcaga 5381488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 5431304 - 5431129
Alignment:
Q  1 cttttgcaatggttgttttaccaattccccccataccccaaatccctagtagcagaacatcatttgattgttgaatgtttagtaattgaatcgtatcgtg 100  Q
    |||||||||| |||||||| || ||||||||||||||||| ||||| ||||| |  ||| ||||||||||||| |||| |||   ||||||   ||| ||    
T  5431304 cttttgcaatagttgtttttccgattccccccataccccacatcccaagtagtattacaccatttgattgttggatgtctagccgttgaataacatcttg 5431205  T
Q  101 cactcgagatttgactcccaccggattatcaacaacgaataagtctgtcttgtcaagcaaaatagtaactttttca 176  Q
    || |||||| |  | |||||| || |||||| ||| ||| | |||| ||||||||||||||  ||||| |||||||    
T  5431204 cattcgagaatcaattcccactggcttatcagcaatgaacatgtctttcttgtcaagcaaatgagtaattttttca 5431129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 5286228 - 5286297
Alignment:
Q  1 cttttgcaatggttgttttaccaattccccccataccccaaatccctagtagcagaacatcatttgattg 70  Q
    |||||| |||||||||||| |||||||||||||||||||| |||||||||||  ||||| | ||||||||    
T  5286228 cttttgtaatggttgtttttccaattccccccataccccacatccctagtagttgaacaccctttgattg 5286297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 5134010 - 5134081
Alignment:
Q  1 cttttgcaatggttgttttaccaattccccccataccccaaatccctagtagcagaacatcatttgattgtt 72  Q
    |||| |||||||||||||||||||  || ||||||||||| |||||||| || | |||||||||||||||||    
T  5134010 ctttcgcaatggttgttttaccaacgcctcccataccccacatccctagaagtataacatcatttgattgtt 5134081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 70
Target Start/End: Original strand, 5262255 - 5262317
Alignment:
Q  8 aatggttgttttaccaattccccccataccccaaatccctagtagcagaacatcatttgattg 70  Q
    |||||||||||| |||||||||||||||||||| ||||||| |||  ||||| | ||||||||    
T  5262255 aatggttgttttgccaattccccccataccccacatccctaatagttgaacaccctttgattg 5262317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 5692216 - 5692293
Alignment:
Q  1 cttttgcaatggttgttttaccaattccccccataccccaaatccctagtagcagaacatcatttgattgttgaatgt 78  Q
    ||||||||||||| ||||| |||||||| ||||| ||||| ||||||| |||  |||||| ||| |||||||| ||||    
T  5692216 cttttgcaatggtggttttgccaattcctcccatgccccacatccctattagtcgaacattattagattgttggatgt 5692293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 64
Target Start/End: Complemental strand, 5394926 - 5394877
Alignment:
Q  15 gttttaccaattccccccataccccaaatccctagtagcagaacatcatt 64  Q
    ||||||||||| || ||||||||||| ||||||||||| | |||||||||    
T  5394926 gttttaccaatacctcccataccccatatccctagtagtacaacatcatt 5394877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 22586420 - 22586467
Alignment:
Q  1 cttttgcaatggttgttttaccaattccccccataccccaaatcccta 48  Q
    ||||||||||||||||||| |||| ||||||||||||||| |||||||    
T  22586420 cttttgcaatggttgttttgccaaatccccccataccccacatcccta 22586467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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