View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17304_low_3 (Length: 450)
Name: NF17304_low_3
Description: NF17304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17304_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 305; Significance: 1e-171; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 1 - 350
Target Start/End: Complemental strand, 26914658 - 26914303
Alignment:
| Q |
1 |
gggaaggcttttagagttaattcaaaatcctgtgactcaacacttaccggtcaactcgcttaaaataggtgagtattataactaggcaatggtagaatgt |
100 |
Q |
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| T |
26914658 |
gggaaggctttttgagttaattcaaaatcctgtgactcaacacttaccggtcaactcgcttaaaataggtgagtattataactaggcaatggtagaatgt |
26914559 |
T |
|
| Q |
101 |
caatgtcttctgtgaagcgttttcttatgacgtgacactcttatgctgttgtaggtctttcgtttaactcgccaaagacagttaaaataagcgactttgt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |
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| T |
26914558 |
caatgtcttctgtgaagcgttttcttatgacgtgacactcttatgctgttgtaggtctttcgtttaactcgccaaaggcagttaaaataaacgactttgt |
26914459 |
T |
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| Q |
201 |
tgctgctaactgtg------ataagagtcttgtatttgtggtaagcttttgcaagtctttatatacactttatagatgggattatttttgttatttcttg |
294 |
Q |
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| T |
26914458 |
tgctgctaactgtgataatcataagagtcttgtatttgtggtaagcttttgcaagtctttatatacactttacagatgggatcatttttgttatttcttg |
26914359 |
T |
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| Q |
295 |
atcgaccgttgtctgcttcttcaggttggtgcaatggctcatggaaaagttgatgc |
350 |
Q |
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| T |
26914358 |
atcgactgttgtctgcttcttcaggttgatgcaatggctcatggaaaagttgatgc |
26914303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 319 - 434
Target Start/End: Complemental strand, 26914310 - 26914195
Alignment:
| Q |
319 |
gttggtgcaatggctcatggaaaagttgatgctgactacattgatgatttcatatcaggttattacttgaacaattttgtgtttatttcaaatccaagtt |
418 |
Q |
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| T |
26914310 |
gttgatgcaatggctcatggaaaagttgatgctgactacattgatgatttcatatcaggttattacttgaacaattttgtgtttatttcaaatccaagtt |
26914211 |
T |
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| Q |
419 |
ttgctgtattgtttgt |
434 |
Q |
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| T |
26914210 |
ttgctgtattgtttgt |
26914195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 379
Target Start/End: Complemental strand, 51182403 - 51182035
Alignment:
| Q |
1 |
gggaaggcttttagagttaattcaaaatcctgtgactcaacacttaccggtcaactcgcttaaaataggtgagtattataactaggcaatggtagaatgt |
100 |
Q |
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||||| ||||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||| |||||||||| ||||| |
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| T |
51182403 |
gggaaagcttttaaagttaattcaaaatcctgtgactcaacacttacccgccaactcgcttaaaattggtgagta---------ggcaatggtacaatgt |
51182313 |
T |
|
| Q |
101 |
caatgtcttctgtgaagcgttttcttatgacgtgacactcttatgctgttgtaggtctttcgtttaactcgccaaagacagttaaaataagcgactttgt |
200 |
Q |
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|||||||||| | || | ||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| || |
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| T |
51182312 |
caatgtcttcattc-------ttatgatgacgtcaaactcttatgctgttgtaggtctttcatttaactcgccaaagacagttaaaataagagacttcgt |
51182220 |
T |
|
| Q |
201 |
tgctgctaactgtgataagagtcttgtatttgtggtaagcttttgcaagtctttata------tacactttatagatgggattatttttgttatttcttg |
294 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||| |
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| T |
51182219 |
tgctgctaactgtgataagaatcttgtatttgtggtaagcttttgcaagtctttatataatattacactttacagatgggatcatttttgttatttcttg |
51182120 |
T |
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| Q |
295 |
atcgaccgttgtctgcttcttcaggttggtgcaatggctcatggaaaagttgatgctgactacattgatgatttcatatcaggtt |
379 |
Q |
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|| || ||||||||||||||||||||||||||||| |||||||||| ||||||| || |||||||||||||||||| |||||| |
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| T |
51182119 |
attgaatgttgtctgcttcttcaggttggtgcaatgcctcatggaaatattgatgccgattacattgatgatttcataccaggtt |
51182035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 397 - 431
Target Start/End: Complemental strand, 51182033 - 51181999
Alignment:
| Q |
397 |
gtgtttatttcaaatccaagttttgctgtattgtt |
431 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
51182033 |
gtgtttatttcaaatccaagttttgctgtattgtt |
51181999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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