View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17304_low_5 (Length: 406)
Name: NF17304_low_5
Description: NF17304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17304_low_5 |
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| [»] chr3 (5 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 110; Significance: 3e-55; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 293 - 406
Target Start/End: Original strand, 1404010 - 1404123
Alignment:
| Q |
293 |
ctaataaccatattaacagatttaaaaactaaccaatgaaataacttgttttgaacttgttcagtggttggctcaaaatcttagccagaaaagaagataa |
392 |
Q |
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| T |
1404010 |
ctaataaccatattaacagatttaaaaactaaccaatgaaataacttgttttgaacttgttcagtggttggctcaaaatcttagccaaaaaagaagataa |
1404109 |
T |
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| Q |
393 |
tctcatttcccatc |
406 |
Q |
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| T |
1404110 |
tctcatttcccatc |
1404123 |
T |
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Target: chr3; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 180 - 270
Target Start/End: Original strand, 1403892 - 1403982
Alignment:
| Q |
180 |
acagataactaactaaccaatcaaacagctttgaattactcattgcctcaaatcttagcatgctcatgtactcatgttcaatcatacacac |
270 |
Q |
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| T |
1403892 |
acagataactaactaaccgatcaaacagctttgaattactcattgcctcaaatcttagcatgctcatgtactcatgttcattcatacacac |
1403982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 1403642 - 1403694
Alignment:
| Q |
9 |
agcagagatcaaatcctcaagtaaagtcaaaaacataattgtaggaagatctc |
61 |
Q |
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| T |
1403642 |
agcagagatcaaatcctcaagtaaagtcaaaaacataattgtgggaagatctc |
1403694 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 113 - 153
Target Start/End: Original strand, 1403848 - 1403890
Alignment:
| Q |
113 |
tcagaaacacata--gccatatgattataatacagaaaattta |
153 |
Q |
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| T |
1403848 |
tcagaaacacatatagccatatgattataatacagaaaattta |
1403890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 77 - 111
Target Start/End: Original strand, 1403711 - 1403745
Alignment:
| Q |
77 |
gtcataattagttgaagtgaaataaacattaaatc |
111 |
Q |
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| T |
1403711 |
gtcacaattagttgaagtgaaataaacattaaatc |
1403745 |
T |
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