View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17304_low_6 (Length: 401)
Name: NF17304_low_6
Description: NF17304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17304_low_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 356; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 10 - 385
Target Start/End: Complemental strand, 48867113 - 48866738
Alignment:
| Q |
10 |
agaagaataactagagtgtatattcagtttgaatatcctacatactaccatactatattcacttacacacaatatctgccacagatttatcgtttgcata |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48867113 |
agaagaataactagagtgtatattcagtttgaatatcctacatactaccatactatattcacttacacacaatatctgccacagatttatcgtttgcata |
48867014 |
T |
|
| Q |
110 |
atagtaccactttcacatattgcagtccccctataactgtatataccagattctatcacagttctatcaaaattctacccttttgtgacttaaactggtt |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48867013 |
atagtaccactttcacatattgcagtccccgtataactgtatgtaccagattctatcacagttctatcaaaattctacccttttgtgacttaaactggtt |
48866914 |
T |
|
| Q |
210 |
ttgaaaaggtcgcaaaggttcaaagacacagagctaaaccaactatatagcaagacagcacatagaggtcgagaacaattaatgtgcccacgacctgcta |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48866913 |
ttgaaaaggtcgcaaaggttcaaagacacagagctaaaccaactatatagcaagacagcacatagaggtcgagaacaattaatgtgcccacgacctgcta |
48866814 |
T |
|
| Q |
310 |
agagtggaaaagtatgaagattcgaagaaaaatgtaaagccgaataaatagaaaaggacacgtaatacctccaaat |
385 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||| |
|
|
| T |
48866813 |
agagtggaaaagtatgaagattcgaagaaaaatgtaaagcccaataaatagaaaaagacacataatacctccaaat |
48866738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 209 - 319
Target Start/End: Complemental strand, 48857220 - 48857110
Alignment:
| Q |
209 |
tttgaaaaggtcgcaaaggttcaaagacacagagctaaaccaactatatagcaagacagcacatagaggtcgagaacaattaatgtgcccacgacctgct |
308 |
Q |
| |
|
||||||||||||| | |||||||||||||| ||| | |||||||||||| |||||||| |||||||||||| | ||||||||||| ||| |||||||| |
|
|
| T |
48857220 |
tttgaaaaggtcggagaggttcaaagacactgagatgaaccaactatattgcaagacatcacatagaggtcaaagacaattaatgtccccgtgacctgct |
48857121 |
T |
|
| Q |
309 |
aagagtggaaa |
319 |
Q |
| |
|
||||| ||||| |
|
|
| T |
48857120 |
aagagcggaaa |
48857110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 29 - 95
Target Start/End: Complemental strand, 48879506 - 48879440
Alignment:
| Q |
29 |
atattcagtttgaatatcctacatactaccatactatattcacttacacacaatatctgccacagat |
95 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||||||||||||||| |||||| |||| ||||||| |
|
|
| T |
48879506 |
atattcagtttgaatatccaacatactagcatactatattcacttagacacaagatctcacacagat |
48879440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 343 - 383
Target Start/End: Complemental strand, 48857069 - 48857029
Alignment:
| Q |
343 |
gtaaagccgaataaatagaaaaggacacgtaatacctccaa |
383 |
Q |
| |
|
|||||||| ||||||||||||| |||| ||||||||||||| |
|
|
| T |
48857069 |
gtaaagccaaataaatagaaaaagacatgtaatacctccaa |
48857029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 203 - 294
Target Start/End: Original strand, 35646750 - 35646837
Alignment:
| Q |
203 |
actggttttgaaaaggtcgcaaaggttcaaagacacagagctaaaccaactatatagcaagacagcacatagaggtcgagaacaattaatgt |
294 |
Q |
| |
|
||||| |||||||||||| || |||||| |||||| || |||||||||||||||| |||||||| ||||||||||||| |||||| |||| |
|
|
| T |
35646750 |
actggatttgaaaaggtc--aagggttcagagacactgaactaaaccaactatataccaagacag--catagaggtcgaggacaattgatgt |
35646837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University